RLG00000027753

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017513
Physical Location & Seq
Reverse (-)
14820939 .. 14822470
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027753

Sequence Viewer

Length: 822 bp
ATGGTGGGGGGTAACAATAATATTCCAGGCCATCAATACAATGACACAACTTTCACCAAAATCTTTGTTGGGGGTTTGGCTTGGGAGACTCAGAGGGAGACTATGAGGAGGTACTTTGAGCAGTTTGGAGAGATCTTGGAGGCTGTTGTTATTACAGATAAAAACACTGGAAGATCCAAAGGCTATGGATTTGTCACATTTAAGGATCCAGAGGCAGCCATGAGGGCTTGTCAGAACCCATCTCCTGTTATCGATGGAAGAAGAGCAAACTGCAATCTTGCTTCTATTGGTGCTCAGAAAACTCGTCCACCCACTCCTCAACATGGTTTTGGAAGGTTTAGACCAGCACCTGGTTTGGTAGCTCCACCTGCTTATCATGGCTCTTCATCCACATACTTCCATCAACCCAGTGGTCAATACACATTTCCTTATTCAGCTTATGGGTACTCTGGATATTCACAAGATTCCATATATTCCATGAACTATTATAGTGTTTATGGTGGTCAACAATTCTCACCTTACTACACCACCACAGCTGGGGCATCAGGGCCAGCTGGCATGTACCACAATTACTACCCATACTATGCTGCTGCTCAATATGCACAGGCTAGTAGTAACCAAGCACAAGGCTTCGGAGTTCAATATCCCCAAATGGTGCAGTACCCATATTTGCCTCAACACTATGGTTCTTCAGCCGGGATTCTGTCACTTCCTTCTTCAATCCCAGTTGCTACTACCACTTCTACCACAACAGGTGTAACAATAGCTACTGGGGTAACTGGAGCTTCTGCAACCAATTCTGAACAGAATTCTTCGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

274

Amino Acids

29.53

Weight (kDa)

8.67

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 21 - 78 1.5e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017513)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17600
rosa_chinensis RchiOBHm_Chr1g0361041
rosa_laevigata RLG00000027753
rosa_multiflora Rmu_sc0000677.1_g000005
rosa_roxburghii Rroxscaffold_4G00295480
rosa_rugosa Rorug01G0284900 Rorug01G0285000
rosa_samantha Rh1AG296400 Rh1BG260700 Rh1CG278000 Rh1DG290700
rosa_wichuraiana Rw1G026180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 376
Acc36I ACCTGC 1 cut(s) 376
AccB7I CCANNNNNTGG 1 cut(s) 350
AclWI GGATC 3 cut(s) 168, 200, 213
AcsI RAATTY 1 cut(s) 808
AcuI CTGAAG 1 cut(s) 675
AfaI GTAC 4 cut(s) 113, 446, 563, 662
AfiI CCNNNNNNNGG 3 cut(s) 323, 350, 537
AgsI TTSAA 2 cut(s) 641, 720
AjnI CCWGG 2 cut(s) 25, 349
AluBI AGCT 6 cut(s) 362, 437, 536, 554, 767, 785
AluI AGCT 6 cut(s) 362, 437, 536, 554, 767, 785
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 2 cut(s) 80, 92
AlwI GGATC 3 cut(s) 168, 200, 213
AlwNI CAGNNNCTG 1 cut(s) 350
AoxI GGCC 2 cut(s) 28, 548
ApeKI GCWGC 3 cut(s) 215, 587, 590
ApoI RAATTY 1 cut(s) 808
AspS9I GGNCC 1 cut(s) 548
AsuC2I CCSGG 1 cut(s) 697
AsuHPI GGTGA 2 cut(s) 46, 507
BamHI GGATCC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 3 cut(s) 227, 574, 577
BccI CCATC 4 cut(s) 39, 247, 248, 408
BciT130I CCWGG 2 cut(s) 27, 351
BcnI CCSGG 1 cut(s) 697
BcoDI GTCTC 2 cut(s) 80, 92
BfaI CTAG 1 cut(s) 609
BfuAI ACCTGC 1 cut(s) 376
BglI GCCNNNNNGGC 1 cut(s) 224
BglII AGATCT 1 cut(s) 132
BisI GCNGC 3 cut(s) 216, 588, 591
BlsI GCNGC 3 cut(s) 217, 589, 592
Bme1390I CCNGG 3 cut(s) 27, 351, 697
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 3 cut(s) 27, 351, 697
BmrI ACTGGG 3 cut(s) 402, 719, 780
BmsI GCATC 1 cut(s) 551
BmuI ACTGGG 3 cut(s) 402, 719, 780
BpmI CTGGAG 1 cut(s) 801
BpuMI CCSGG 1 cut(s) 697
Bsa29I ATCGAT 1 cut(s) 252
Bsc4I CCNNNNNNNGG 3 cut(s) 323, 350, 537
Bse1I ACTGG 5 cut(s) 172, 408, 725, 775, 784
BseBI CCWGG 2 cut(s) 27, 351
BseCI ATCGAT 1 cut(s) 252
BseGI GGATG 1 cut(s) 386
BseLI CCNNNNNNNGG 3 cut(s) 323, 350, 537
BseMII CTCAG 2 cut(s) 104, 308
BseNI ACTGG 5 cut(s) 172, 408, 725, 775, 784
BseRI GAGGAG 2 cut(s) 121, 306
BseXI GCAGC 3 cut(s) 227, 574, 577
BseYI CCCAGC 1 cut(s) 536
BsgI GTGCAG 1 cut(s) 677
BshFI GGCC 2 cut(s) 30, 550
BshVI ATCGAT 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 295
BsiSI CCGG 1 cut(s) 696
BslI CCNNNNNNNGG 3 cut(s) 323, 350, 537
BsmAI GTCTC 2 cut(s) 80, 92
BsnI GGCC 2 cut(s) 30, 550
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 3 cut(s) 132, 173, 205
BspANI GGCC 2 cut(s) 30, 550
BspCNI CTCAG 2 cut(s) 103, 307
BspDI ATCGAT 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 207
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 3 cut(s) 168, 200, 213
BspQI GCTCTTC 2 cut(s) 256, 388
BsrI ACTGG 5 cut(s) 172, 408, 725, 775, 784
BssMI GATC 3 cut(s) 132, 173, 205
Bst2UI CCWGG 2 cut(s) 27, 351
Bst6I CTCTTC 2 cut(s) 256, 388
BstC8I GCNNGC 2 cut(s) 552, 556
BstDEI CTNAG 2 cut(s) 90, 294
BstF5I GGATG 1 cut(s) 386
BstKTI GATC 3 cut(s) 135, 176, 208
BstMAI GTCTC 2 cut(s) 80, 92
BstMBI GATC 3 cut(s) 132, 173, 205
BstMWI GCNNNNNNNGC 3 cut(s) 224, 368, 599
BstNI CCWGG 2 cut(s) 27, 351
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 3 cut(s) 25, 349, 695
BstV1I GCAGC 3 cut(s) 227, 574, 577
BstX2I RGATCY 3 cut(s) 132, 173, 205
BstYI RGATCY 3 cut(s) 132, 173, 205
Bsu15I ATCGAT 1 cut(s) 252
BsuRI GGCC 2 cut(s) 30, 550
BsuTUI ATCGAT 1 cut(s) 252
BtsCI GGATG 1 cut(s) 386
BtsIMutI CAGTG 2 cut(s) 165, 415
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 2 cut(s) 552, 556
CaiI CAGNNNCTG 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 548
ClaI ATCGAT 1 cut(s) 252
CsiI ACCWGGT 1 cut(s) 349
Csp6I GTAC 4 cut(s) 112, 445, 562, 661
CviAII CATG 5 cut(s) 220, 323, 377, 478, 559
CviQI GTAC 4 cut(s) 112, 445, 562, 661
DdeI CTNAG 2 cut(s) 90, 294
DpnI GATC 3 cut(s) 134, 175, 207
DpnII GATC 3 cut(s) 132, 173, 205
Eam1104I CTCTTC 2 cut(s) 256, 388
EarI CTCTTC 2 cut(s) 256, 388
Eco57I CTGAAG 1 cut(s) 675
EcoRI GAATTC 1 cut(s) 808
EcoRII CCWGG 2 cut(s) 25, 349
FaeI CATG 5 cut(s) 223, 326, 380, 481, 562
FatI CATG 5 cut(s) 219, 322, 376, 477, 558
Fnu4HI GCNGC 3 cut(s) 216, 588, 591
FokI GGATG 1 cut(s) 373
Fsp4HI GCNGC 3 cut(s) 216, 588, 591
FspBI CTAG 1 cut(s) 609
GluI GCNGC 3 cut(s) 216, 588, 591
GsaI CCCAGC 1 cut(s) 540
GsuI CTGGAG 1 cut(s) 801
HaeIII GGCC 2 cut(s) 30, 550
HapII CCGG 1 cut(s) 696
Hin1II CATG 5 cut(s) 223, 326, 380, 481, 562
HincII GTYRAC 1 cut(s) 506
HindII GTYRAC 1 cut(s) 506
HinfI GANTC 3 cut(s) 88, 464, 700
HpaII CCGG 1 cut(s) 696
HphI GGTGA 2 cut(s) 46, 507
Hpy166II GTNNAC 2 cut(s) 308, 506
Hpy188I TCNGA 5 cut(s) 93, 234, 297, 635, 802
Hpy188III TCNNGA 2 cut(s) 209, 450
Hpy8I GTNNAC 2 cut(s) 308, 506
HpyAV CCTTC 2 cut(s) 327, 723
HpyCH4V TGCA 4 cut(s) 273, 602, 658, 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 368, 599
HpyF3I CTNAG 2 cut(s) 90, 294
Hsp92II CATG 5 cut(s) 223, 326, 380, 481, 562
Kzo9I GATC 3 cut(s) 132, 173, 205
LguI GCTCTTC 2 cut(s) 256, 388
LmnI GCTCC 2 cut(s) 367, 782
Lsp1109I GCAGC 3 cut(s) 227, 574, 577
LweI GCATC 1 cut(s) 551
MabI ACCWGGT 1 cut(s) 349
MaeI CTAG 1 cut(s) 609
MaeIII GTNAC 6 cut(s) 11, 193, 614, 705, 757, 775
MalI GATC 3 cut(s) 134, 175, 207
MboI GATC 3 cut(s) 132, 173, 205
MboII GAAGA 7 cut(s) 183, 270, 273, 375, 681, 708, 804
MflI RGATCY 3 cut(s) 132, 173, 205
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 4 cut(s) 509, 568, 796, 808
MlyI GAGTC 1 cut(s) 82
MnlI CCTC 8 cut(s) 87, 99, 102, 133, 205, 216, 327, 684
MseI TTAA 2 cut(s) 201, 820
MspA1I CMGCKG 2 cut(s) 536, 554
MspI CCGG 1 cut(s) 696
MspR9I CCNGG 3 cut(s) 27, 351, 697
MvaI CCWGG 2 cut(s) 27, 351
MwoI GCNNNNNNNGC 3 cut(s) 224, 368, 599
NciI CCSGG 1 cut(s) 697
NdeII GATC 3 cut(s) 132, 173, 205
NlaIII CATG 5 cut(s) 223, 326, 380, 481, 562
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 2 cut(s) 193, 705
NspI RCATGY 1 cut(s) 562
PaqCI CACCTGC 1 cut(s) 376
PciSI GCTCTTC 2 cut(s) 256, 388
PfeI GAWTC 2 cut(s) 464, 700
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 3 cut(s) 217, 589, 592
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp6I CCWGG 2 cut(s) 25, 349
PspFI CCCAGC 1 cut(s) 536
PspGI CCWGG 2 cut(s) 25, 349
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 548
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 3 cut(s) 132, 173, 205
PvuII CAGCTG 2 cut(s) 536, 554
RsaI GTAC 4 cut(s) 113, 446, 563, 662
RsaNI GTAC 4 cut(s) 112, 445, 562, 661
SapI GCTCTTC 2 cut(s) 256, 388
SaqAI TTAA 2 cut(s) 201, 820
SatI GCNGC 3 cut(s) 216, 588, 591
Sau3AI GATC 3 cut(s) 132, 173, 205
Sau96I GGNCC 1 cut(s) 548
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 3 cut(s) 27, 351, 697
SduI GDGCHC 1 cut(s) 295
SexAI ACCWGGT 1 cut(s) 349
SfaNI GCATC 1 cut(s) 551
Sse9I AATT 4 cut(s) 509, 568, 796, 808
SspI AATATT 1 cut(s) 22
SspMI CTAG 1 cut(s) 609
StyD4I CCNGG 3 cut(s) 25, 349, 695
TaqI TCGA 2 cut(s) 252, 815
TasI AATT 4 cut(s) 509, 568, 796, 808
TfiI GAWTC 2 cut(s) 464, 700
Tru1I TTAA 2 cut(s) 201, 820
Tru9I TTAA 2 cut(s) 201, 820
TscAI CASTG 2 cut(s) 172, 415
TseFI GTSAC 2 cut(s) 193, 705
TseI GCWGC 3 cut(s) 215, 587, 590
Tsp45I GTSAC 2 cut(s) 193, 705
TspDTI ATGAA 2 cut(s) 375, 494
TspRI CASTG 2 cut(s) 172, 415
Van91I CCANNNNNTGG 1 cut(s) 350
XapI RAATTY 1 cut(s) 808
XceI RCATGY 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XspI CTAG 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.