FvH4_7g18940

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018477
Physical Location & Seq
Reverse (-)
15756463 .. 15757796
1334 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18940.t1

Sequence Viewer

Length: 963 bp
ATGGATTCCTACACACATTTCACCAGTACACGCGGCCTCAGAGTCTTCAAACTCTCGGAGCTTGAGAAGGCCACCGAGAACTTCAGCTCATCTCGCTACATTGGAGGGGGAGATTTTGGAGCTGACATCTTTAAGGGAGTCATCAAGGATGGCAACAAAACCAACATCCATATACTTGTCTATAGGATCACCCGAGCACCTACTCGTAAAGCAAAAAGCGACGATGAGTGGGCGAGGGAGCTAACAAAACAAGTATCAGCTATTGATGATCGTCCAAACCTTGCTAGAGTGGTGGGATATTGTGCCACCCGATACAAGAAGAAGGGACATGTAGAGCCTGTCCGATTTATAGTGGAGGAAGATGCCTGCAATGGAAATTTACATGACTATCTACATAAGGAACGGCATCAACCTCTTTCATGGGCAAAGAGACTCAGCATACTCCGAGATGTTGCTCGTGGCTTGGCTTATTTTCATGATGAATTAGATAACAAGATACTATCTTTCAAATCCTCCAACATACTCTTGGATCAGTTGGATGGGAACTTAAATGCCAAATTGTCAGGGTACTCGATGGCAACACTAGGTTCTTTCGATGACCACTTAATGGATATTACACGTTTTTATGCGAGTTACGAAGCTCCTGAACTCCTTATACGAGGCGAAGTGACGTCCAGCAGCAATGTGTGGAGCTATGGTATCTTCATCTTGGAGGTCATAACTGGTAAGAATCCATCAGATAAGAACCTTCACAGAAAATTAAAGAAACTATGGAGCTCCGATAGAAGCAAGTTGGTGAAGATGATAGACCCCAAGCTTAAAGGAAATTATTCAGTGGAATCTGCAATGGCGCTAGCAGCACTAGCAGCTGACCATTGCTTGCAGGAAGAGCCAAACCAGCGACCTAGAATGAGTGAGGTCCTTGCAATGGTGTCTACAATGGCTGAGACATCAGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

36.21

Weight (kDa)

8.75

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 30 - 309 2.6e-19 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 31 - 308 2e-24 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018477)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18940
rosa_chinensis RchiOBHm_Chr1g0362871
rosa_multiflora Rmu_sc0001502.1_g000013
rosa_roxburghii Rroxscaffold_4G00293690
rosa_rugosa Rorug01G0302100
rosa_samantha Rh1AG311000 Rh1BG274100 Rh1CG291300 Rh1DG304900
rosa_wichuraiana Rw1G027570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 674
AccB7I CCANNNNNTGG 1 cut(s) 607
AccI GTMKAC 1 cut(s) 935
AccII CGCG 1 cut(s) 33
AciI CCGC 1 cut(s) 33
AclWI GGATC 2 cut(s) 194, 537
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 671
AfaI GTAC 2 cut(s) 28, 569
AfiI CCNNNNNNNGG 2 cut(s) 607, 928
AflIII ACRYGT 2 cut(s) 328, 617
AgsI TTSAA 2 cut(s) 49, 508
Alw21I GWGCWC 2 cut(s) 199, 779
Alw26I GTCTC 2 cut(s) 424, 941
AlwI GGATC 2 cut(s) 194, 537
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 2 cut(s) 34, 69
ApeKI GCWGC 3 cut(s) 678, 857, 866
ApoI RAATTY 1 cut(s) 376
Asp700I GAANNNNTTC 1 cut(s) 829
AspLEI GCGC 1 cut(s) 853
AspS9I GGNCC 1 cut(s) 919
AsuHPI GGTGA 3 cut(s) 13, 181, 808
AsuNHI GCTAGC 1 cut(s) 853
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 1 cut(s) 919
BanII GRGCYC 1 cut(s) 779
BauI CACGAG 1 cut(s) 456
BbsI GAAGAC 1 cut(s) 37
Bbv12I GWGCWC 2 cut(s) 199, 779
BbvI GCAGC 3 cut(s) 690, 869, 878
BccI CCATC 4 cut(s) 143, 533, 568, 742
BceAI ACGGC 1 cut(s) 419
BcoDI GTCTC 2 cut(s) 424, 941
BfaI CTAG 5 cut(s) 285, 584, 854, 863, 906
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 854
BisI GCNGC 4 cut(s) 34, 679, 858, 867
BlsI GCNGC 4 cut(s) 35, 680, 859, 868
Bme18I GGWCC 1 cut(s) 919
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 919
BmsI GCATC 2 cut(s) 352, 415
BmtI GCTAGC 1 cut(s) 857
BpiI GAAGAC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 671
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 2 cut(s) 607, 928
Bse1I ACTGG 2 cut(s) 24, 727
Bse3DI GCAATG 5 cut(s) 376, 688, 852, 874, 933
BseGI GGATG 3 cut(s) 154, 165, 544
BseLI CCNNNNNNNGG 2 cut(s) 607, 928
BseMI GCAATG 5 cut(s) 376, 688, 852, 874, 933
BseMII CTCAG 3 cut(s) 52, 448, 936
BseNI ACTGG 2 cut(s) 24, 727
BseXI GCAGC 3 cut(s) 690, 869, 878
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 2 cut(s) 36, 71
BsiHKAI GWGCWC 2 cut(s) 199, 779
BsiHKCI CYCGRG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 2 cut(s) 607, 928
BsmAI GTCTC 2 cut(s) 424, 941
BsmFI GGGAC 1 cut(s) 339
BsnI GGCC 2 cut(s) 36, 71
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 2 cut(s) 199, 779
Bsp143I GATC 3 cut(s) 186, 268, 529
BspACI CCGC 1 cut(s) 33
BspANI GGCC 2 cut(s) 36, 71
BspCNI CTCAG 3 cut(s) 51, 447, 937
BspFNI CGCG 1 cut(s) 33
BspHI TCATGA 1 cut(s) 475
BspOI GCTAGC 1 cut(s) 857
BspPI GGATC 2 cut(s) 194, 537
BspQI GCTCTTC 1 cut(s) 882
BsrDI GCAATG 5 cut(s) 376, 688, 852, 874, 933
BsrI ACTGG 2 cut(s) 24, 727
BssMI GATC 3 cut(s) 186, 268, 529
BssNI GRCGYC 1 cut(s) 671
BssSI CACGAG 1 cut(s) 456
Bst2BI CACGAG 1 cut(s) 456
Bst6I CTCTTC 1 cut(s) 882
BstACI GRCGYC 1 cut(s) 671
BstC8I GCNNGC 3 cut(s) 367, 855, 881
BstDEI CTNAG 3 cut(s) 38, 434, 945
BstF5I GGATG 3 cut(s) 154, 165, 544
BstFNI CGCG 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 854
BstHHI GCGC 1 cut(s) 853
BstKTI GATC 3 cut(s) 189, 271, 532
BstMAI GTCTC 2 cut(s) 424, 941
BstMBI GATC 3 cut(s) 186, 268, 529
BstMWI GCNNNNNNNGC 6 cut(s) 93, 857, 863, 866, 889, 898
BstNSI RCATGY 1 cut(s) 332
BstSFI CTRYAG 1 cut(s) 181
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 3 cut(s) 690, 869, 878
BstV2I GAAGAC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 36, 71
BtsCI GGATG 3 cut(s) 154, 165, 544
BtsIMutI CAGTG 1 cut(s) 840
Cac8I GCNNGC 3 cut(s) 367, 855, 881
CciI TCATGA 1 cut(s) 475
CfoI GCGC 1 cut(s) 853
Cfr13I GGNCC 1 cut(s) 919
Csp6I GTAC 2 cut(s) 27, 568
CviAII CATG 4 cut(s) 329, 383, 420, 476
CviQI GTAC 2 cut(s) 27, 568
DdeI CTNAG 3 cut(s) 38, 434, 945
DpnI GATC 3 cut(s) 188, 270, 531
DpnII GATC 3 cut(s) 186, 268, 529
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
Ecl136II GAGCTC 1 cut(s) 777
Eco24I GRGCYC 1 cut(s) 779
Eco47I GGWCC 1 cut(s) 919
Eco53kI GAGCTC 1 cut(s) 777
Eco57I CTGAAG 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 777
EcoO109I RGGNCCY 1 cut(s) 919
EcoT38I GRGCYC 1 cut(s) 779
FaeI CATG 4 cut(s) 332, 386, 423, 479
FaqI GGGAC 1 cut(s) 339
FatI CATG 4 cut(s) 328, 382, 419, 475
FblI GTMKAC 1 cut(s) 935
Fnu4HI GCNGC 4 cut(s) 34, 679, 858, 867
FokI GGATG 3 cut(s) 152, 161, 551
FriOI GRGCYC 1 cut(s) 779
Fsp4HI GCNGC 4 cut(s) 34, 679, 858, 867
FspBI CTAG 5 cut(s) 285, 584, 854, 863, 906
GlaI GCGC 1 cut(s) 852
GluI GCNGC 4 cut(s) 34, 679, 858, 867
HaeII RGCGCY 1 cut(s) 854
HaeIII GGCC 2 cut(s) 36, 71
HhaI GCGC 1 cut(s) 853
Hin1I GRCGYC 1 cut(s) 671
Hin1II CATG 4 cut(s) 332, 386, 423, 479
Hin6I GCGC 1 cut(s) 851
HinP1I GCGC 1 cut(s) 851
HindIII AAGCTT 1 cut(s) 815
HinfI GANTC 6 cut(s) 5, 42, 138, 432, 730, 839
HphI GGTGA 3 cut(s) 13, 181, 808
Hpy166II GTNNAC 2 cut(s) 29, 936
Hpy188I TCNGA 7 cut(s) 41, 58, 344, 446, 739, 781, 955
Hpy188III TCNNGA 2 cut(s) 476, 644
Hpy8I GTNNAC 2 cut(s) 29, 936
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 3 cut(s) 61, 316, 758
HpyCH4IV ACGT 2 cut(s) 619, 671
HpyCH4V TGCA 4 cut(s) 369, 845, 883, 926
HpyF10VI GCNNNNNNNGC 6 cut(s) 93, 857, 863, 866, 889, 898
HpyF3I CTNAG 3 cut(s) 38, 434, 945
HpySE526I ACGT 2 cut(s) 619, 671
Hsp92I GRCGYC 1 cut(s) 671
Hsp92II CATG 4 cut(s) 332, 386, 423, 479
HspAI GCGC 1 cut(s) 851
Kzo9I GATC 3 cut(s) 186, 268, 529
LguI GCTCTTC 1 cut(s) 882
LmnI GCTCC 7 cut(s) 58, 119, 238, 646, 690, 774, 782
LpnPI CCDG 9 cut(s) 37, 351, 379, 549, 657, 688, 708, 869, 911
Lsp1109I GCAGC 3 cut(s) 690, 869, 878
LweI GCATC 2 cut(s) 352, 415
MaeI CTAG 5 cut(s) 285, 584, 854, 863, 906
MaeII ACGT 2 cut(s) 619, 671
MaeIII GTNAC 2 cut(s) 632, 667
MalI GATC 3 cut(s) 188, 270, 531
MboI GATC 3 cut(s) 186, 268, 529
MboII GAAGA 6 cut(s) 37, 331, 371, 694, 811, 899
MhlI GDGCHC 2 cut(s) 199, 779
MluCI AATT 6 cut(s) 376, 482, 557, 758, 826, 958
MlyI GAGTC 3 cut(s) 51, 147, 426
MmeI TCCRAC 2 cut(s) 516, 540
MnlI CCTC 9 cut(s) 47, 98, 228, 349, 423, 523, 653, 706, 910
MroXI GAANNNNTTC 1 cut(s) 829
MseI TTAA 5 cut(s) 132, 548, 605, 761, 819
MspA1I CMGCKG 1 cut(s) 869
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 6 cut(s) 93, 857, 863, 866, 889, 898
NdeII GATC 3 cut(s) 186, 268, 529
NheI GCTAGC 1 cut(s) 853
NlaIII CATG 4 cut(s) 332, 386, 423, 479
NmuCI GTSAC 1 cut(s) 667
NspI RCATGY 1 cut(s) 332
PagI TCATGA 1 cut(s) 475
PciI ACATGT 1 cut(s) 328
PciSI GCTCTTC 1 cut(s) 882
PdmI GAANNNNTTC 1 cut(s) 829
PfeI GAWTC 3 cut(s) 5, 730, 839
PflMI CCANNNNNTGG 1 cut(s) 607
PkrI GCNGC 4 cut(s) 35, 680, 859, 868
PleI GAGTC 3 cut(s) 50, 146, 426
PpsI GAGTC 3 cut(s) 50, 146, 426
PpuMI RGGWCCY 1 cut(s) 919
PscI ACATGT 1 cut(s) 328
Psp124BI GAGCTC 1 cut(s) 779
Psp5II RGGWCCY 1 cut(s) 919
PspPI GGNCC 1 cut(s) 919
PspPPI RGGWCCY 1 cut(s) 919
PsrI GAACNNNNNNTAC 2 cut(s) 639, 671
PvuII CAGCTG 1 cut(s) 869
RsaI GTAC 2 cut(s) 28, 569
RsaNI GTAC 2 cut(s) 27, 568
SacI GAGCTC 1 cut(s) 779
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 5 cut(s) 132, 548, 605, 761, 819
SatI GCNGC 4 cut(s) 34, 679, 858, 867
Sau3AI GATC 3 cut(s) 186, 268, 529
Sau96I GGNCC 1 cut(s) 919
SchI GAGTC 3 cut(s) 51, 147, 426
SduI GDGCHC 2 cut(s) 199, 779
SfaNI GCATC 2 cut(s) 352, 415
SfcI CTRYAG 1 cut(s) 181
SinI GGWCC 1 cut(s) 919
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 6 cut(s) 376, 482, 557, 758, 826, 958
SsiI CCGC 1 cut(s) 33
SspMI CTAG 5 cut(s) 285, 584, 854, 863, 906
SstI GAGCTC 1 cut(s) 779
TaiI ACGT 2 cut(s) 622, 674
TaqI TCGA 2 cut(s) 572, 594
TasI AATT 6 cut(s) 376, 482, 557, 758, 826, 958
TatI WGTACW 1 cut(s) 26
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 3 cut(s) 5, 730, 839
Tru1I TTAA 5 cut(s) 132, 548, 605, 761, 819
Tru9I TTAA 5 cut(s) 132, 548, 605, 761, 819
TscAI CASTG 1 cut(s) 840
TseFI GTSAC 1 cut(s) 667
TseI GCWGC 3 cut(s) 678, 857, 866
Tsp45I GTSAC 1 cut(s) 667
TspDTI ATGAA 4 cut(s) 408, 464, 495, 694
TspRI CASTG 1 cut(s) 840
Van91I CCANNNNNTGG 1 cut(s) 607
VpaK11BI GGWCC 1 cut(s) 919
XapI RAATTY 1 cut(s) 376
XceI RCATGY 1 cut(s) 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XmiI GTMKAC 1 cut(s) 935
XmnI GAANNNNTTC 1 cut(s) 829
XspI CTAG 5 cut(s) 285, 584, 854, 863, 906
ZraI GACGTC 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.