RchiOBHm_Chr1g0362871

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0018477
Physical Location & Seq
Reverse (-)
54461143 .. 54462453
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58765

Sequence Viewer

Length: 957 bp
ATGGATCCCTACACGCAACTCACCAGTACACACGGCCTCAGAGTCTTCCAACTCTCAGAGCTCGAGAAGGCCACCAAGAATTTCAGCTCGTCTCGCTACGTTGGAGGGGGAGATTTTGGAGCTGAGATCTTTAAGGGAGTGATCAAGAATGCCAACAAAACAAAACTTCATGTACTGGTCTATAGGATCACCCGAGGACCTACTCTTGAGGCAAAAAGCGACGAAGAGTGGGCGGGGGAGCTCACAAAACAAGTATCAGCTATTGACGATCATCCAAACTTCGTTAAAGTGGTGGGATATTGTGCCACTCGATACAAGAAGAAGAAGGGACATGTAGAGCCTGTACGATTTATAGTGGAAGAAGATGCATGCAATGGAAATTTACATGACTATCTACATGAGGGGCGGCATCAACCTCTTTCATGGGCAAAGAGGCTCAACATACTCCGAGATGTTGCTCGTGGTTTGGCTTATTTTCATGATTCATTAGATAACAAGATACTGTCTTTTAAGTCCTCTAACATACTCTTGGATGAGAACGTAAATGCCAAATTGTCAGAGTACGCGACAGCAACACTAGGTCCTTTCGATGAAAACTTGATGGACGTTACATGTGTTTCTGTGAGTTATGAAGCTCCTGAACTCCTTCTAAGAGGCGACTTGACGTCCAAGAGCAACGTGTGGAGCTATGGCGTCTTTATCTTGGAGGTCATAACTGGTAACCAGCCATCTGATGGAAACCTGACGAAAAAGTTGAAGAAATTATGGAGCTCCGACAGAAACAAGTTGGAGAAGATGATAGACCCCAAGCTTAAAGGAAGGTATTCTGCAGAATCGGCAATGGCACTAGCAGCACTTGCAGCTGATCATTGCTTGCAGGAAGAGCCAAACAAGCGACCAAAAATGAGTGAGGTCCTTGCAATGGTGTCTACAATGGCAGAGACAGCAGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

35.57

Weight (kDa)

7.12

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 31 - 306 2.3e-26 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 32 - 307 1.3e-23 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018477)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18940
rosa_chinensis RchiOBHm_Chr1g0362871
rosa_multiflora Rmu_sc0001502.1_g000013
rosa_roxburghii Rroxscaffold_4G00293690
rosa_rugosa Rorug01G0302100
rosa_samantha Rh1AG311000 Rh1BG274100 Rh1CG291300 Rh1DG304900
rosa_wichuraiana Rw1G027570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 668
AccB7I CCANNNNNTGG 1 cut(s) 734
AccI GTMKAC 1 cut(s) 929
AccII CGCG 1 cut(s) 566
AciI CCGC 2 cut(s) 233, 406
AclWI GGATC 2 cut(s) 12, 194
AcsI RAATTY 3 cut(s) 79, 379, 951
AcyI GRCGYC 2 cut(s) 665, 693
AfaI GTAC 4 cut(s) 28, 174, 345, 563
AfiI CCNNNNNNNGG 2 cut(s) 734, 922
AflIII ACRYGT 3 cut(s) 331, 611, 678
AgsI TTSAA 1 cut(s) 757
AhdI GACNNNNNGTC 1 cut(s) 664
Alw21I GWGCWC 3 cut(s) 63, 243, 773
Alw26I GTCTC 2 cut(s) 96, 935
AlwI GGATC 2 cut(s) 12, 194
Ama87I CYCGRG 2 cut(s) 62, 192
AoxI GGCC 2 cut(s) 34, 69
ApeKI GCWGC 2 cut(s) 851, 860
ApoI RAATTY 3 cut(s) 79, 379, 951
Asp700I GAANNNNTTC 2 cut(s) 645, 823
AspS9I GGNCC 3 cut(s) 197, 581, 913
AsuHPI GGTGA 2 cut(s) 13, 181
AvaI CYCGRG 2 cut(s) 62, 192
AvaII GGWCC 3 cut(s) 197, 581, 913
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 3 cut(s) 63, 243, 773
BauI CACGAG 1 cut(s) 459
BbsI GAAGAC 1 cut(s) 37
Bbv12I GWGCWC 3 cut(s) 63, 243, 773
BbvI GCAGC 2 cut(s) 863, 872
BccI CCATC 3 cut(s) 595, 728, 736
BceAI ACGGC 1 cut(s) 49
BclI TGATCA 2 cut(s) 141, 865
BcoDI GTCTC 2 cut(s) 96, 935
BfaI CTAG 2 cut(s) 578, 848
BfmI CTRYAG 2 cut(s) 181, 828
BglII AGATCT 1 cut(s) 126
BisI GCNGC 3 cut(s) 407, 852, 861
BlsI GCNGC 3 cut(s) 408, 853, 862
Bme18I GGWCC 3 cut(s) 197, 581, 913
BmeRI GACNNNNNGTC 1 cut(s) 664
BmeT110I CYCGRG 2 cut(s) 62, 192
BmgT120I GGNCC 3 cut(s) 197, 581, 913
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 355, 418
BpiI GAAGAC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 227
BsaHI GRCGYC 2 cut(s) 665, 693
BsaJI CCNNGG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 2 cut(s) 734, 922
Bse1I ACTGG 3 cut(s) 24, 180, 721
Bse3DI GCAATG 4 cut(s) 379, 846, 868, 927
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 2 cut(s) 271, 538
BseLI CCNNNNNNNGG 2 cut(s) 734, 922
BseMI GCAATG 4 cut(s) 379, 846, 868, 927
BseMII CTCAG 3 cut(s) 52, 69, 114
BseNI ACTGG 3 cut(s) 24, 180, 721
BseXI GCAGC 2 cut(s) 863, 872
Bsh1236I CGCG 1 cut(s) 566
BshFI GGCC 2 cut(s) 36, 71
BsiHKAI GWGCWC 3 cut(s) 63, 243, 773
BsiHKCI CYCGRG 2 cut(s) 62, 192
BslFI GGGAC 1 cut(s) 342
BslI CCNNNNNNNGG 2 cut(s) 734, 922
BsmAI GTCTC 2 cut(s) 96, 935
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 342
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 2 cut(s) 36, 71
BsoBI CYCGRG 2 cut(s) 62, 192
Bsp1286I GDGCHC 3 cut(s) 63, 243, 773
Bsp143I GATC 6 cut(s) 4, 126, 141, 186, 268, 865
BspACI CCGC 2 cut(s) 233, 406
BspANI GGCC 2 cut(s) 36, 71
BspCNI CTCAG 3 cut(s) 51, 68, 115
BspFNI CGCG 1 cut(s) 566
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 832
BspPI GGATC 2 cut(s) 12, 194
BspQI GCTCTTC 1 cut(s) 876
BsrDI GCAATG 4 cut(s) 379, 846, 868, 927
BsrI ACTGG 3 cut(s) 24, 180, 721
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 6 cut(s) 4, 126, 141, 186, 268, 865
BssNI GRCGYC 2 cut(s) 665, 693
BssSI CACGAG 1 cut(s) 459
Bst2BI CACGAG 1 cut(s) 459
Bst4CI ACNGT 1 cut(s) 504
Bst6I CTCTTC 2 cut(s) 219, 876
BstACI GRCGYC 2 cut(s) 665, 693
BstAPI GCANNNNNTGC 1 cut(s) 857
BstC8I GCNNGC 2 cut(s) 370, 875
BstDEI CTNAG 4 cut(s) 38, 55, 123, 650
BstEII GGTNACC 1 cut(s) 719
BstF5I GGATG 2 cut(s) 271, 538
BstFNI CGCG 1 cut(s) 566
BstKTI GATC 6 cut(s) 7, 129, 144, 189, 271, 868
BstMAI GTCTC 2 cut(s) 96, 935
BstMBI GATC 6 cut(s) 4, 126, 141, 186, 268, 865
BstMWI GCNNNNNNNGC 8 cut(s) 93, 836, 851, 857, 860, 883, 892, 944
BstNSI RCATGY 3 cut(s) 335, 372, 615
BstPI GGTNACC 1 cut(s) 719
BstSFI CTRYAG 2 cut(s) 181, 828
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 2 cut(s) 863, 872
BstV2I GAAGAC 1 cut(s) 37
BstX2I RGATCY 2 cut(s) 4, 126
BstYI RGATCY 2 cut(s) 4, 126
BsuRI GGCC 2 cut(s) 36, 71
BtsCI GGATG 2 cut(s) 271, 538
Cac8I GCNNGC 2 cut(s) 370, 875
CciI TCATGA 1 cut(s) 478
Cfr13I GGNCC 3 cut(s) 197, 581, 913
CseI GACGC 1 cut(s) 682
Csp6I GTAC 4 cut(s) 27, 173, 344, 562
CviAII CATG 8 cut(s) 170, 332, 369, 386, 398, 423, 479, 612
CviQI GTAC 4 cut(s) 27, 173, 344, 562
DdeI CTNAG 4 cut(s) 38, 55, 123, 650
DpnI GATC 6 cut(s) 6, 128, 143, 188, 270, 867
DpnII GATC 6 cut(s) 4, 126, 141, 186, 268, 865
DriI GACNNNNNGTC 1 cut(s) 664
Eam1104I CTCTTC 2 cut(s) 219, 876
Eam1105I GACNNNNNGTC 1 cut(s) 664
EarI CTCTTC 2 cut(s) 219, 876
Ecl136II GAGCTC 3 cut(s) 61, 241, 771
Eco24I GRGCYC 3 cut(s) 63, 243, 773
Eco47I GGWCC 3 cut(s) 197, 581, 913
Eco53kI GAGCTC 3 cut(s) 61, 241, 771
Eco88I CYCGRG 2 cut(s) 62, 192
Eco91I GGTNACC 1 cut(s) 719
EcoICRI GAGCTC 3 cut(s) 61, 241, 771
EcoO109I RGGNCCY 3 cut(s) 197, 581, 913
EcoO65I GGTNACC 1 cut(s) 719
EcoT22I ATGCAT 1 cut(s) 370
EcoT38I GRGCYC 3 cut(s) 63, 243, 773
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 8 cut(s) 173, 335, 372, 389, 401, 426, 482, 615
FaqI GGGAC 1 cut(s) 342
FatI CATG 8 cut(s) 169, 331, 368, 385, 397, 422, 478, 611
FauI CCCGC 1 cut(s) 226
FbaI TGATCA 2 cut(s) 141, 865
FblI GTMKAC 1 cut(s) 929
Fnu4HI GCNGC 3 cut(s) 407, 852, 861
FokI GGATG 2 cut(s) 258, 545
FriOI GRGCYC 3 cut(s) 63, 243, 773
Fsp4HI GCNGC 3 cut(s) 407, 852, 861
FspBI CTAG 2 cut(s) 578, 848
GluI GCNGC 3 cut(s) 407, 852, 861
HaeIII GGCC 2 cut(s) 36, 71
HgaI GACGC 1 cut(s) 682
Hin1I GRCGYC 2 cut(s) 665, 693
Hin1II CATG 8 cut(s) 173, 335, 372, 389, 401, 426, 482, 615
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 3 cut(s) 42, 482, 833
HphI GGTGA 2 cut(s) 13, 181
Hpy166II GTNNAC 2 cut(s) 29, 930
Hpy188I TCNGA 6 cut(s) 41, 58, 449, 559, 733, 775
Hpy188III TCNNGA 5 cut(s) 64, 145, 206, 479, 638
Hpy8I GTNNAC 2 cut(s) 29, 930
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 4 cut(s) 61, 319, 656, 813
HpyCH4III ACNGT 1 cut(s) 504
HpyCH4IV ACGT 5 cut(s) 99, 540, 606, 665, 678
HpyCH4V TGCA 6 cut(s) 368, 372, 830, 860, 877, 920
HpyF10VI GCNNNNNNNGC 8 cut(s) 93, 836, 851, 857, 860, 883, 892, 944
HpyF3I CTNAG 4 cut(s) 38, 55, 123, 650
HpySE526I ACGT 5 cut(s) 99, 540, 606, 665, 678
Hsp92I GRCGYC 2 cut(s) 665, 693
Hsp92II CATG 8 cut(s) 173, 335, 372, 389, 401, 426, 482, 615
Ksp22I TGATCA 2 cut(s) 141, 865
Kzo9I GATC 6 cut(s) 4, 126, 141, 186, 268, 865
LguI GCTCTTC 1 cut(s) 876
LmnI GCTCC 6 cut(s) 119, 238, 640, 684, 768, 776
LpnPI CCDG 8 cut(s) 37, 161, 354, 651, 702, 737, 755, 863
Lsp1109I GCAGC 2 cut(s) 863, 872
LweI GCATC 2 cut(s) 355, 418
MaeI CTAG 2 cut(s) 578, 848
MaeII ACGT 5 cut(s) 99, 540, 606, 665, 678
MaeIII GTNAC 2 cut(s) 607, 719
MalI GATC 6 cut(s) 6, 128, 143, 188, 270, 867
MboI GATC 6 cut(s) 4, 126, 141, 186, 268, 865
MboII GAAGA 9 cut(s) 37, 236, 331, 334, 371, 374, 769, 805, 893
MflI RGATCY 2 cut(s) 4, 126
MhlI GDGCHC 3 cut(s) 63, 243, 773
MluCI AATT 5 cut(s) 79, 379, 551, 761, 951
MlyI GAGTC 1 cut(s) 51
MmeI TCCRAC 4 cut(s) 73, 82, 768, 798
Mph1103I ATGCAT 1 cut(s) 370
MroXI GAANNNNTTC 2 cut(s) 645, 823
MseI TTAA 4 cut(s) 132, 285, 510, 813
MspA1I CMGCKG 1 cut(s) 863
Mva1269I GAATGC 1 cut(s) 154
MvnI CGCG 1 cut(s) 566
MwoI GCNNNNNNNGC 8 cut(s) 93, 836, 851, 857, 860, 883, 892, 944
NdeII GATC 6 cut(s) 4, 126, 141, 186, 268, 865
NlaIII CATG 8 cut(s) 173, 335, 372, 389, 401, 426, 482, 615
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 370
NspI RCATGY 3 cut(s) 335, 372, 615
PaeI GCATGC 1 cut(s) 372
PaeR7I CTCGAG 1 cut(s) 62
PagI TCATGA 1 cut(s) 478
PciI ACATGT 2 cut(s) 331, 611
PciSI GCTCTTC 1 cut(s) 876
PctI GAATGC 1 cut(s) 154
PdmI GAANNNNTTC 2 cut(s) 645, 823
PfeI GAWTC 2 cut(s) 482, 833
PflMI CCANNNNNTGG 1 cut(s) 734
PkrI GCNGC 3 cut(s) 408, 853, 862
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PpuMI RGGWCCY 3 cut(s) 197, 581, 913
PscI ACATGT 2 cut(s) 331, 611
Psp124BI GAGCTC 3 cut(s) 63, 243, 773
Psp5II RGGWCCY 3 cut(s) 197, 581, 913
PspEI GGTNACC 1 cut(s) 719
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 3 cut(s) 197, 581, 913
PspPPI RGGWCCY 3 cut(s) 197, 581, 913
PstI CTGCAG 1 cut(s) 832
PsuI RGATCY 2 cut(s) 4, 126
PvuII CAGCTG 1 cut(s) 863
RsaI GTAC 4 cut(s) 28, 174, 345, 563
RsaNI GTAC 4 cut(s) 27, 173, 344, 562
SacI GAGCTC 3 cut(s) 63, 243, 773
SapI GCTCTTC 1 cut(s) 876
SaqAI TTAA 4 cut(s) 132, 285, 510, 813
SatI GCNGC 3 cut(s) 407, 852, 861
Sau3AI GATC 6 cut(s) 4, 126, 141, 186, 268, 865
Sau96I GGNCC 3 cut(s) 197, 581, 913
SchI GAGTC 1 cut(s) 51
SduI GDGCHC 3 cut(s) 63, 243, 773
SfaNI GCATC 2 cut(s) 355, 418
SfcI CTRYAG 2 cut(s) 181, 828
Sfr274I CTCGAG 1 cut(s) 62
SinI GGWCC 3 cut(s) 197, 581, 913
SlaI CTCGAG 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 62, 206
SmoI CTYRAG 2 cut(s) 62, 206
SphI GCATGC 1 cut(s) 372
Sse9I AATT 5 cut(s) 79, 379, 551, 761, 951
SsiI CCGC 2 cut(s) 233, 406
SspMI CTAG 2 cut(s) 578, 848
SstI GAGCTC 3 cut(s) 63, 243, 773
TaaI ACNGT 1 cut(s) 504
TaiI ACGT 5 cut(s) 102, 543, 609, 668, 681
TaqI TCGA 3 cut(s) 63, 310, 588
TasI AATT 5 cut(s) 79, 379, 551, 761, 951
TatI WGTACW 2 cut(s) 26, 172
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 2 cut(s) 482, 833
Tru1I TTAA 4 cut(s) 132, 285, 510, 813
Tru9I TTAA 4 cut(s) 132, 285, 510, 813
TseI GCWGC 2 cut(s) 851, 860
TspDTI ATGAA 6 cut(s) 158, 411, 467, 474, 606, 645
Van91I CCANNNNNTGG 1 cut(s) 734
VpaK11BI GGWCC 3 cut(s) 197, 581, 913
XapI RAATTY 3 cut(s) 79, 379, 951
XceI RCATGY 3 cut(s) 335, 372, 615
XcmI CCANNNNNNNNNTGG 1 cut(s) 731
XhoI CTCGAG 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 929
XmnI GAANNNNTTC 2 cut(s) 645, 823
XspI CTAG 2 cut(s) 578, 848
ZraI GACGTC 1 cut(s) 666
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.