FvH4_7g22220

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018077
Physical Location & Seq
Forward (+)
17561530 .. 17562618
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22220.t1

Sequence Viewer

Length: 486 bp
ATGCTTTCCTTCAAAACCACTCGGATTGTTTCTCTGATATTGAGGATCCTGATTTTCATTGCGCTCCTTTCCTCCCTAGTCATCGTTTCCATCAATAAACTCGAGTATCTTAGTGGGCTCGACCCCAAAAGCTTTACTTACTTTGTAGGGCTCCGATACGTGTTTGCTACATGTTTTATTGGAGCTGCATATGCAATCGGCCAAGGTGTACGTTCAATCATACATATGGCGAAAGGAAGTGAAGGGAACGCCGCGTTTGATTTCTATGCAGAAGAGGTTATGTTGAATTTTATAGCTTCAGGAGCTGTGGCAGGGTTTATCGCGGCCGCAGATGTTCAGAAAGAATTTATAGCCTTTTTCAGGGATGATGACTTTCTCAATATGACATTTATAGCATCTGGACTTGTCATGTTTGCCTACCTCTGCAGTTTTGCGTTATCAGTCTTCTCTTCATACGAACTCGGTAGACAAGATGATTGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

162

Amino Acids

17.79

Weight (kDa)

5.01

Isoelectric Point (pI)

26.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 7 - 115 1.2e-09 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018077)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g22220
prunus_persica Prupe.2G234100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366601
rosa_laevigata RLG00000027334
rosa_roxburghii Rroxscaffold_4G00289820
rosa_rugosa Rorug01G0330800
rosa_samantha Rh1AG339200 Rh1BG300800 Rh1CG315700 Rh1DG332500
rosa_wichuraiana Rw1G030040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 466
AccII CGCG 2 cut(s) 254, 323
AciI CCGC 3 cut(s) 252, 323, 327
AclWI GGATC 2 cut(s) 40, 53
AcoI YGGCCR 2 cut(s) 199, 324
AcsI RAATTY 2 cut(s) 286, 344
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 360
AflIII ACRYGT 2 cut(s) 159, 170
AgsI TTSAA 3 cut(s) 13, 216, 286
AluBI AGCT 4 cut(s) 132, 185, 296, 305
AluI AGCT 4 cut(s) 132, 185, 296, 305
AlwI GGATC 2 cut(s) 40, 53
AlwNI CAGNNNCTG 1 cut(s) 305
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 2 cut(s) 199, 324
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 2 cut(s) 286, 344
AspLEI GCGC 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 101
BaeI ACNNNNGTAYC 2 cut(s) 89, 122
BamHI GGATCC 1 cut(s) 45
BanII GRGCYC 2 cut(s) 120, 153
BbsI GAAGAC 1 cut(s) 436
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 98
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 424
BisI GCNGC 4 cut(s) 186, 252, 324, 327
BlsI GCNGC 4 cut(s) 187, 253, 325, 328
BmeT110I CYCGRG 1 cut(s) 101
BmiI GGNNCC 2 cut(s) 47, 152
BmsI GCATC 1 cut(s) 404
BpiI GAAGAC 1 cut(s) 436
BsaAI YACGTR 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 202
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse3DI GCAATG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMI GCAATG 1 cut(s) 57
BseX3I CGGCCG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 172
Bsh1236I CGCG 2 cut(s) 254, 323
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 2 cut(s) 201, 326
BsiEI CGRYCG 1 cut(s) 327
BsiHKCI CYCGRG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 360
BsnI GGCC 2 cut(s) 201, 326
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 120, 153
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 3 cut(s) 252, 323, 327
BspANI GGCC 2 cut(s) 201, 326
BspFNI CGCG 2 cut(s) 254, 323
BspLI GGNNCC 2 cut(s) 47, 152
BspMAI CTGCAG 1 cut(s) 428
BspPI GGATC 2 cut(s) 40, 53
BsrDI GCAATG 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 202
Bst6I CTCTTC 2 cut(s) 267, 454
BstBAI YACGTR 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 110
BstENI CCTNNNNNAGG 1 cut(s) 358
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 2 cut(s) 254, 323
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 2 cut(s) 191, 302
BstNSI RCATGY 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 424
BstUI CGCG 2 cut(s) 254, 323
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 436
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BstZI CGGCCG 1 cut(s) 324
BsuRI GGCC 2 cut(s) 201, 326
BtsCI GGATG 1 cut(s) 370
CaiI CAGNNNCTG 1 cut(s) 305
CciNI GCGGCCGC 1 cut(s) 324
CfoI GCGC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 209
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 2 cut(s) 171, 409
CviJI RGCY 9 cut(s) 118, 132, 151, 185, 201, 296, 305, 326, 353
CviKI_1 RGCY 9 cut(s) 118, 132, 151, 185, 201, 296, 305, 326, 353
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 1 cut(s) 110
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
EaeI YGGCCR 2 cut(s) 199, 324
EagI CGGCCG 1 cut(s) 324
Eam1104I CTCTTC 2 cut(s) 267, 454
EarI CTCTTC 2 cut(s) 267, 454
EclXI CGGCCG 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 202
Eco24I GRGCYC 2 cut(s) 120, 153
Eco52I CGGCCG 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 101
EcoNI CCTNNNNNAGG 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 202
EcoT38I GRGCYC 2 cut(s) 120, 153
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 2 cut(s) 174, 412
FalI AAGNNNNNCTT 2 cut(s) 121, 153
FatI CATG 2 cut(s) 170, 408
FauNDI CATATG 2 cut(s) 190, 225
FblI GTMKAC 1 cut(s) 466
Fnu4HI GCNGC 4 cut(s) 186, 252, 324, 327
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 2 cut(s) 120, 153
Fsp4HI GCNGC 4 cut(s) 186, 252, 324, 327
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 63
GluI GCNGC 4 cut(s) 186, 252, 324, 327
HaeIII GGCC 2 cut(s) 201, 326
HhaI GCGC 1 cut(s) 64
Hin1II CATG 2 cut(s) 174, 412
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HindIII AAGCTT 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 209, 467
Hpy188I TCNGA 4 cut(s) 24, 36, 155, 339
Hpy188III TCNNGA 3 cut(s) 49, 300, 399
Hpy8I GTNNAC 2 cut(s) 209, 467
HpyAV CCTTC 2 cut(s) 19, 236
HpyCH4IV ACGT 2 cut(s) 159, 211
HpyCH4V TGCA 4 cut(s) 188, 194, 269, 426
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 302
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 2 cut(s) 159, 211
Hsp92II CATG 2 cut(s) 174, 412
HspAI GCGC 1 cut(s) 62
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 4 cut(s) 69, 156, 182, 302
LpnPI CCDG 5 cut(s) 62, 285, 297, 346, 384
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 404
MaeI CTAG 1 cut(s) 77
MaeII ACGT 2 cut(s) 159, 211
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 3 cut(s) 284, 436, 441
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 2 cut(s) 120, 153
MluCI AATT 2 cut(s) 286, 344
MnlI CCTC 4 cut(s) 36, 82, 268, 431
MslI CAYNNNNRTG 1 cut(s) 224
MvnI CGCG 2 cut(s) 254, 323
MwoI GCNNNNNNNGC 2 cut(s) 191, 302
NdeI CATATG 2 cut(s) 190, 225
NdeII GATC 1 cut(s) 45
NlaIII CATG 2 cut(s) 174, 412
NlaIV GGNNCC 2 cut(s) 47, 152
NotI GCGGCCGC 1 cut(s) 324
NspI RCATGY 1 cut(s) 174
PaeR7I CTCGAG 1 cut(s) 101
PciI ACATGT 1 cut(s) 170
PkrI GCNGC 4 cut(s) 187, 253, 325, 328
Ppu21I YACGTR 1 cut(s) 160
PscI ACATGT 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 47, 152
PspXI VCTCGAGB 1 cut(s) 101
PstI CTGCAG 1 cut(s) 428
PstNI CAGNNNCTG 1 cut(s) 305
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 224
SatI GCNGC 4 cut(s) 186, 252, 324, 327
Sau3AI GATC 1 cut(s) 45
SduI GDGCHC 2 cut(s) 120, 153
SetI ASST 9 cut(s) 134, 162, 187, 208, 214, 279, 298, 307, 423
SfaNI GCATC 1 cut(s) 404
SfcI CTRYAG 1 cut(s) 424
Sfr274I CTCGAG 1 cut(s) 101
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 2 cut(s) 286, 344
SsiI CCGC 3 cut(s) 252, 323, 327
SspMI CTAG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 202
TaiI ACGT 2 cut(s) 162, 214
TaqI TCGA 2 cut(s) 102, 120
TasI AATT 2 cut(s) 286, 344
TauI GCSGC 3 cut(s) 254, 326, 329
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 46, 441
XagI CCTNNNNNAGG 1 cut(s) 358
XapI RAATTY 2 cut(s) 286, 344
XceI RCATGY 1 cut(s) 174
XhoI CTCGAG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 466
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.