Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0018077

Physical Location & Seq

Genomic Coordinates Forward (+)

25673908 .. 25674859

Gene Structure 952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G234100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGACGCATCACTGCTTTCCTCCACAAGTATGCGGATTATTACTCTTGTATTGAGGATCGTGACCGCCGTCACACTGCTTGCGTCCCTCGGGCTCCTCCTCATCATATCTCATCCAGTAAAAGATCTCAACGAACGCGGAGAGGTTAAGGAAACTTGGATCATGCGCTTTTATCACAGAGTTCCATTCCGATATACGGCTGCAACGATTATTATTGGAGCTGCATATTCAATCTTCCAGATCGTATGTGCAATTATCCGCTTAGCCAAAAGAAATGAAGGGAATGTCATGTTGGATTTCTTCGGTGAGGAGGTTTTGTCGAAATTATTAGTTTCAGGAGCTGTTGCAGGGTTTCTTGGGTCGTCAGAGCTGGTGAAAGCTTGGGAAGAGTATGGCGTGAATAGAGAAGACATAAACTCGTTTACGAACAAGACATATGCAGCAAATGGACTTGTCCTCCTTAGTTTCGTCTTCAGTTTTGTATTATCGGTTCTCTCTTCATATGCACTCGCCAGGAATATATCACTTTCAGAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

180

Amino Acids

19.77

Weight (kDa)

7.86

Isoelectric Point (pI)

25.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018077)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22220
prunus_persica	Prupe.2G234100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0366601
rosa_laevigata	RLG00000027334
rosa_roxburghii	Rroxscaffold_4G00289820
rosa_rugosa	Rorug01G0330800
rosa_samantha	Rh1AG339200 Rh1BG300800 Rh1CG315700 Rh1DG332500
rosa_wichuraiana	Rw1G030040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	138
AciI	CCGC	4 cut(s)	34, 66, 138, 259
AclWI	GGATC	2 cut(s)	65, 167
AcuI	CTGAAG	1 cut(s)	457
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	231
AjnI	CCWGG	1 cut(s)	512
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	4 cut(s)	221, 341, 370, 380
AluI	AGCT	4 cut(s)	221, 341, 370, 380
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	2 cut(s)	65, 167
AlwNI	CAGNNNCTG	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	89
ApeKI	GCWGC	3 cut(s)	200, 221, 440
AspLEI	GCGC	1 cut(s)	168
AsuHPI	GGTGA	2 cut(s)	317, 385
AvaI	CYCGRG	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	2 cut(s)	414, 463
BbvI	GCAGC	3 cut(s)	187, 208, 452
BceAI	ACGGC	2 cut(s)	53, 213
BciT130I	CCWGG	1 cut(s)	514
BcoDI	GTCTC	1 cut(s)	527
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	3 cut(s)	201, 222, 441
BlpI	GCTNAGC	1 cut(s)	262
BlsI	GCNGC	3 cut(s)	202, 223, 442
Bme1390I	CCNGG	1 cut(s)	514
BmeT110I	CYCGRG	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	514
BmsI	GCATC	1 cut(s)	17
BoxI	GACNNNNGTC	1 cut(s)	68
BpiI	GAAGAC	2 cut(s)	414, 463
Bpu1102I	GCTNAGC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	88
BsaXI	ACNNNNNCTCC	4 cut(s)	302, 332, 441, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	3 cut(s)	86, 89, 323
BseXI	GCAGC	3 cut(s)	187, 208, 452
Bsh1236I	CGCG	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	57, 124, 159, 240
Bsp1720I	GCTNAGC	1 cut(s)	262
BspACI	CCGC	4 cut(s)	34, 66, 138, 259
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	95
BspPI	GGATC	2 cut(s)	65, 167
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	4 cut(s)	57, 124, 159, 240
Bst2UI	CCWGG	1 cut(s)	514
Bst6I	CTCTTC	2 cut(s)	381, 502
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	262, 461
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	4 cut(s)	60, 127, 162, 243
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	4 cut(s)	57, 124, 159, 240
BstNI	CCWGG	1 cut(s)	514
BstPAI	GACNNNNGTC	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	512
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	187, 208, 452
BstV2I	GAAGAC	2 cut(s)	414, 463
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	2 cut(s)	11, 74
BtsIMutI	CAGTG	2 cut(s)	11, 74
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	341
CfoI	GCGC	1 cut(s)	168
CseI	GACGC	2 cut(s)	14, 72
CviAII	CATG	2 cut(s)	163, 289
CviJI	RGCY	7 cut(s)	94, 200, 221, 266, 341, 370, 380
CviKI_1	RGCY	7 cut(s)	94, 200, 221, 266, 341, 370, 380
DdeI	CTNAG	2 cut(s)	262, 461
DpnI	GATC	4 cut(s)	59, 126, 161, 242
DpnII	GATC	4 cut(s)	57, 124, 159, 240
Eam1104I	CTCTTC	2 cut(s)	381, 502
EarI	CTCTTC	2 cut(s)	381, 502
Eco24I	GRGCYC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	2 cut(s)	166, 292
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	2 cut(s)	162, 288
FauNDI	CATATG	2 cut(s)	436, 502
Fnu4HI	GCNGC	3 cut(s)	201, 222, 441
FokI	GGATG	1 cut(s)	99
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	201, 222, 441
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	3 cut(s)	201, 222, 441
HgaI	GACGC	2 cut(s)	14, 72
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	166, 292
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	378
HphI	GGTGA	2 cut(s)	317, 385
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188I	TCNGA	3 cut(s)	191, 367, 532
Hpy188III	TCNNGA	3 cut(s)	61, 238, 336
Hpy8I	GTNNAC	1 cut(s)	423
HpyAV	CCTTC	1 cut(s)	272
HpyCH4V	TGCA	6 cut(s)	203, 224, 251, 347, 440, 506
HpyF3I	CTNAG	2 cut(s)	262, 461
Hsp92II	CATG	2 cut(s)	166, 292
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	57, 124, 159, 240
LmnI	GCTCC	3 cut(s)	99, 218, 338
LpnPI	CCDG	7 cut(s)	129, 251, 321, 333, 356, 499, 526
Lsp1109I	GCAGC	3 cut(s)	187, 208, 452
LweI	GCATC	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	61, 70
MalI	GATC	4 cut(s)	59, 126, 161, 242
MboI	GATC	4 cut(s)	57, 124, 159, 240
MboII	GAAGA	6 cut(s)	226, 292, 398, 419, 463, 489
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	2 cut(s)	252, 323
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	9 cut(s)	31, 48, 98, 107, 110, 136, 301, 304, 467
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	514
MvaI	CCWGG	1 cut(s)	514
MvnI	CGCG	1 cut(s)	138
NdeI	CATATG	2 cut(s)	436, 502
NdeII	GATC	4 cut(s)	57, 124, 159, 240
NlaIII	CATG	2 cut(s)	166, 292
NlaIV	GGNNCC	1 cut(s)	95
NmuCI	GTSAC	2 cut(s)	61, 70
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 203
PkrI	GCNGC	3 cut(s)	202, 223, 442
PshAI	GACNNNNGTC	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	95
PsrI	GAACNNNNNNTAC	2 cut(s)	474, 506
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	3 cut(s)	201, 222, 441
Sau3AI	GATC	4 cut(s)	57, 124, 159, 240
ScrFI	CCNGG	1 cut(s)	514
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	6 cut(s)	147, 223, 315, 343, 372, 382
SfaNI	GCATC	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	29
Sse9I	AATT	2 cut(s)	252, 323
SsiI	CCGC	4 cut(s)	34, 66, 138, 259
StyD4I	CCNGG	1 cut(s)	512
TaqI	TCGA	1 cut(s)	320
TasI	AATT	2 cut(s)	252, 323
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	18, 81
TseFI	GTSAC	2 cut(s)	61, 70
TseI	GCWGC	3 cut(s)	200, 221, 440
Tsp45I	GTSAC	2 cut(s)	61, 70
TspDTI	ATGAA	2 cut(s)	291, 489
TspRI	CASTG	2 cut(s)	18, 81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.