FvH4_7g23561

BEL1-like homeodomain protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
18354645 .. 18357251
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23561.t1

Sequence Viewer

Length: 1188 bp
ATGGCAGGCGAGGGTTTTGAAGCCTTCGACGTCCCCCAACAAAGCAGAAGAGACCACTTCCGAGTCATGAACCTCCTAACCAACCCACCACAGCCACAACTCTCACTCTTCACACCCTCCTCCACCATGCCAACCCACCAACCACCGCTTCCTCTACGTTTCTCCGACCACGACCACCGCCGCGTTTTTGAACGTGGTGAGTTCAGAAGCAGCCTTGTTCCCCTAGGCCCTTTCACAGGCTACGCTTCCATACTGAAGCACTCCAGGTTTCTCAACCCTGCGCAGCAACTCCTTCAAGACTCCTGCGGGTCGGATCGGTCCGATTCAGACCCTCCTCGTCTCCTTAACTACTTCAATGAAAGAGCAAGAGATCAGATTATTGGAGTCAGTGATCGGTTCGAGCTTCAGTTCAAGAATTCCAGTCTCACCATCATGCTCGATGAGATGGAGTCAGTTGTTGCATCGTTTGAAACTATTGATGGGATTGGAAATGCAGCACCGTACATGTCTTTTGCCATCAAGGCCGTTTTGAAGCACTTTGGTTTCTTGAAGAATGCCATTTTGGACATACTTCAATCAAAAGGCAAGAGTACTGTTGGTGATTTTAGCCTTGTTAAAGATGACATTAGGGGGGTTTCTAAAAGAGGCCTTTGTAGCCAAAACCCAAGTCATCAGAACCTGACCAGCAACTTTCATCTATCGGAAATTCGATCCCAAAGAGGACTTCCGGAAACTGCAGTGTCTGTGATGAGGACATGGCTCTTCGAACACTTCCTTCATCCTTATCCTAGTGATTCTGAAAAGCAAAGGCTAGCTCAACAAACAGGCTTATCAAGAACTCAGGTTTCCAATTGGTTTATCAATTCAAGAGTAAGACTTTGGAAGCCAATGGTGGAAGAAATACACAGCCTGGAAACACAACAATCTCCAATGATTTCAAATTCAGACGTAACGAGAAGAAACGTAACGGCGCCATCTCTTGGCTCTTATTCTTTAGAGAACCCTCTCCATTTGGGGACTCTGCCTCAAACTAAACGCTCTAGAACCAACAAACATCTTGACATGTCTGAGCAGAACGAAACACAAAGCAATGCAGCAGCTTATGAGAATATCACAGGGAATTATCTTCATATGAATAGCCATGAAGGTGAAGTGTCTTTAGCATTAAGCCTACAGGCCAAAAAATGA

Protein Analysis

396

Amino Acids

44.64

Weight (kDa)

7.88

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POX PF07526 84 - 187 3.6e-13 Associated with HOX
Homeobox_KN PF05920 253 - 292 3.1e-20 Homeobox KN domain
Homeodomain PF00046 260 - 292 1.3e-08 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 33
Acc16I TGCGCA 1 cut(s) 282
AccB1I GGYRCC 1 cut(s) 970
AccB7I CCANNNNNTGG 1 cut(s) 980
AccII CGCG 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 727
AciI CCGC 4 cut(s) 146, 178, 181, 306
AclWI GGATC 2 cut(s) 321, 705
AcsI RAATTY 3 cut(s) 415, 705, 940
AcuI CTGAAG 2 cut(s) 275, 389
AcyI GRCGYC 2 cut(s) 30, 971
AfaI GTAC 2 cut(s) 503, 592
AfiI CCNNNNNNNGG 2 cut(s) 236, 980
AflIII ACRYGT 2 cut(s) 504, 1062
AjnI CCWGG 2 cut(s) 263, 909
AjuI GAANNNNNNNTTGG 6 cut(s) 132, 164, 545, 577, 708, 740
AluBI AGCT 3 cut(s) 403, 815, 1100
AluI AGCT 3 cut(s) 403, 815, 1100
Alw26I GTCTC 3 cut(s) 45, 344, 428
AlwI GGATC 2 cut(s) 321, 705
AlwNI CAGNNNCTG 2 cut(s) 679, 743
Aor13HI TCCGGA 1 cut(s) 727
AoxI GGCC 4 cut(s) 226, 522, 646, 1176
ApeKI GCWGC 5 cut(s) 210, 283, 494, 1094, 1097
ApoI RAATTY 3 cut(s) 415, 705, 940
ArsI GACNNNNNNTTYG 2 cut(s) 652, 684
AspA2I CCTAGG 1 cut(s) 223
AspLEI GCGC 2 cut(s) 283, 973
AspS9I GGNCC 2 cut(s) 227, 318
AsuHPI GGTGA 4 cut(s) 209, 418, 611, 1160
AsuII TTCGAA 1 cut(s) 765
AsuNHI GCTAGC 1 cut(s) 811
AvaII GGWCC 1 cut(s) 318
AvrII CCTAGG 1 cut(s) 223
BanI GGYRCC 1 cut(s) 970
BbvI GCAGC 5 cut(s) 222, 295, 506, 1106, 1109
BccI CCATC 5 cut(s) 437, 439, 473, 524, 982
BceAI ACGGC 2 cut(s) 509, 984
BciT130I CCWGG 2 cut(s) 265, 911
BcoDI GTCTC 3 cut(s) 45, 344, 428
BfaI CTAG 4 cut(s) 224, 789, 812, 1041
BfmI CTRYAG 2 cut(s) 735, 1172
BfoI RGCGCY 1 cut(s) 974
BglI GCCNNNNNGGC 1 cut(s) 521
BisI GCNGC 6 cut(s) 181, 211, 284, 495, 1095, 1098
BlnI CCTAGG 1 cut(s) 223
BlsI GCNGC 6 cut(s) 182, 212, 285, 496, 1096, 1099
BmcAI AGTACT 1 cut(s) 592
Bme1390I CCNGG 2 cut(s) 265, 911
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 2 cut(s) 227, 318
BmiI GGNNCC 1 cut(s) 972
BmrFI CCNGG 2 cut(s) 265, 911
BmsI GCATC 1 cut(s) 470
BmtI GCTAGC 1 cut(s) 815
BpmI CTGGAG 1 cut(s) 247
Bpu14I TTCGAA 1 cut(s) 765
BsaHI GRCGYC 2 cut(s) 30, 971
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 223
BsaWI WCCGGW 1 cut(s) 727
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 980
Bse1I ACTGG 1 cut(s) 420
Bse3DI GCAATG 1 cut(s) 1096
BseAI TCCGGA 1 cut(s) 727
BseBI CCWGG 2 cut(s) 265, 911
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 778
BseLI CCNNNNNNNGG 2 cut(s) 236, 980
BseMI GCAATG 1 cut(s) 1096
BseMII CTCAG 2 cut(s) 854, 1059
BseNI ACTGG 1 cut(s) 420
BseRI GAGGAG 2 cut(s) 109, 324
BseXI GCAGC 5 cut(s) 222, 295, 506, 1106, 1109
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 4 cut(s) 228, 524, 648, 1178
BshNI GGYRCC 1 cut(s) 970
BsiSI CCGG 1 cut(s) 728
BslFI GGGAC 2 cut(s) 17, 1030
BslI CCNNNNNNNGG 2 cut(s) 236, 980
BsmAI GTCTC 3 cut(s) 45, 344, 428
BsmBI CGTCTC 1 cut(s) 344
BsmFI GGGAC 2 cut(s) 17, 1030
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 4 cut(s) 228, 524, 648, 1178
Bso31I GGTCTC 1 cut(s) 45
Bsp119I TTCGAA 1 cut(s) 765
Bsp13I TCCGGA 1 cut(s) 727
Bsp143I GATC 4 cut(s) 313, 370, 391, 710
BspACI CCGC 4 cut(s) 146, 178, 181, 306
BspANI GGCC 4 cut(s) 228, 524, 648, 1178
BspCNI CTCAG 2 cut(s) 853, 1060
BspEI TCCGGA 1 cut(s) 727
BspFNI CGCG 1 cut(s) 183
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 972
BspMAI CTGCAG 1 cut(s) 739
BspOI GCTAGC 1 cut(s) 815
BspPI GGATC 2 cut(s) 321, 705
BspQI GCTCTTC 1 cut(s) 767
BspT104I TTCGAA 1 cut(s) 765
BspT107I GGYRCC 1 cut(s) 970
BspTNI GGTCTC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 1096
BsrI ACTGG 1 cut(s) 420
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 4 cut(s) 313, 370, 391, 710
BssNI GRCGYC 2 cut(s) 30, 971
BssT1I CCWWGG 1 cut(s) 223
Bst2UI CCWGG 2 cut(s) 265, 911
Bst4CI ACNGT 2 cut(s) 501, 595
Bst6I CTCTTC 3 cut(s) 43, 113, 767
BstACI GRCGYC 2 cut(s) 30, 971
BstBI TTCGAA 1 cut(s) 765
BstC8I GCNNGC 2 cut(s) 7, 813
BstDEI CTNAG 2 cut(s) 840, 1068
BstENI CCTNNNNNAGG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 778
BstFNI CGCG 1 cut(s) 183
BstH2I RGCGCY 1 cut(s) 974
BstHHI GCGC 2 cut(s) 283, 973
BstKTI GATC 4 cut(s) 316, 373, 394, 713
BstMAI GTCTC 3 cut(s) 45, 344, 428
BstMBI GATC 4 cut(s) 313, 370, 391, 710
BstMWI GCNNNNNNNGC 2 cut(s) 521, 654
BstNI CCWGG 2 cut(s) 265, 911
BstNSI RCATGY 2 cut(s) 508, 1066
BstSCI CCNGG 2 cut(s) 263, 909
BstSFI CTRYAG 2 cut(s) 735, 1172
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 5 cut(s) 222, 295, 506, 1106, 1109
BsuRI GGCC 4 cut(s) 228, 524, 648, 1178
BtsCI GGATG 1 cut(s) 778
BtsI GCAGTG 1 cut(s) 744
BtsIMutI CAGTG 2 cut(s) 394, 744
Cac8I GCNNGC 2 cut(s) 7, 813
CaiI CAGNNNCTG 2 cut(s) 679, 743
CciI TCATGA 1 cut(s) 66
CfoI GCGC 2 cut(s) 283, 973
Cfr13I GGNCC 2 cut(s) 227, 318
CpoI CGGWCCG 1 cut(s) 318
Csp6I GTAC 2 cut(s) 502, 591
CspI CGGWCCG 1 cut(s) 318
CviAII CATG 7 cut(s) 67, 127, 433, 505, 756, 1063, 1142
CviQI GTAC 2 cut(s) 502, 591
DdeI CTNAG 2 cut(s) 840, 1068
DinI GGCGCC 1 cut(s) 972
DpnI GATC 4 cut(s) 315, 372, 393, 712
DpnII GATC 4 cut(s) 313, 370, 391, 710
Eam1104I CTCTTC 3 cut(s) 43, 113, 767
EarI CTCTTC 3 cut(s) 43, 113, 767
Eco130I CCWWGG 1 cut(s) 223
Eco147I AGGCCT 1 cut(s) 648
Eco31I GGTCTC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 318
Eco57I CTGAAG 2 cut(s) 275, 389
EcoNI CCTNNNNNAGG 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 227
EcoRI GAATTC 1 cut(s) 415
EcoRII CCWGG 2 cut(s) 263, 909
EcoT14I CCWWGG 1 cut(s) 223
EgeI GGCGCC 1 cut(s) 972
EheI GGCGCC 1 cut(s) 972
ErhI CCWWGG 1 cut(s) 223
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 7 cut(s) 70, 130, 436, 508, 759, 1066, 1145
FaqI GGGAC 2 cut(s) 17, 1030
FatI CATG 7 cut(s) 66, 126, 432, 504, 755, 1062, 1141
FauI CCCGC 1 cut(s) 299
FauNDI CATATG 1 cut(s) 1131
Fnu4HI GCNGC 6 cut(s) 181, 211, 284, 495, 1095, 1098
FokI GGATG 1 cut(s) 765
Fsp4HI GCNGC 6 cut(s) 181, 211, 284, 495, 1095, 1098
FspBI CTAG 4 cut(s) 224, 789, 812, 1041
FspI TGCGCA 1 cut(s) 282
GlaI GCGC 2 cut(s) 282, 972
GluI GCNGC 6 cut(s) 181, 211, 284, 495, 1095, 1098
GsuI CTGGAG 1 cut(s) 247
HaeII RGCGCY 1 cut(s) 974
HaeIII GGCC 4 cut(s) 228, 524, 648, 1178
HapII CCGG 1 cut(s) 728
HhaI GCGC 2 cut(s) 283, 973
Hin1I GRCGYC 2 cut(s) 30, 971
Hin1II CATG 7 cut(s) 70, 130, 436, 508, 759, 1066, 1145
Hin6I GCGC 2 cut(s) 281, 971
HinP1I GCGC 2 cut(s) 281, 971
HinfI GANTC 7 cut(s) 63, 299, 323, 384, 449, 794, 1018
HpaII CCGG 1 cut(s) 728
HphI GGTGA 4 cut(s) 209, 418, 611, 1160
Hpy188III TCNNGA 9 cut(s) 67, 296, 412, 547, 728, 834, 867, 1041, 1058
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 4 cut(s) 34, 302, 785, 1139
HpyCH4III ACNGT 2 cut(s) 501, 595
HpyCH4IV ACGT 5 cut(s) 30, 157, 193, 948, 963
HpyCH4V TGCA 4 cut(s) 461, 494, 737, 1094
HpyF10VI GCNNNNNNNGC 2 cut(s) 521, 654
HpyF3I CTNAG 2 cut(s) 840, 1068
HpySE526I ACGT 5 cut(s) 30, 157, 193, 948, 963
Hsp92I GRCGYC 2 cut(s) 30, 971
Hsp92II CATG 7 cut(s) 70, 130, 436, 508, 759, 1066, 1145
HspAI GCGC 2 cut(s) 281, 971
KasI GGCGCC 1 cut(s) 970
Kpn2I TCCGGA 1 cut(s) 727
Kzo9I GATC 4 cut(s) 313, 370, 391, 710
LguI GCTCTTC 1 cut(s) 767
Lsp1109I GCAGC 5 cut(s) 222, 295, 506, 1106, 1109
LweI GCATC 1 cut(s) 470
MaeI CTAG 4 cut(s) 224, 789, 812, 1041
MaeII ACGT 5 cut(s) 30, 157, 193, 948, 963
MaeIII GTNAC 2 cut(s) 949, 964
MalI GATC 4 cut(s) 315, 372, 393, 712
MboI GATC 4 cut(s) 313, 370, 391, 710
MboII GAAGA 7 cut(s) 60, 100, 562, 754, 908, 969, 1118
MfeI CAATTG 1 cut(s) 850
MluCI AATT 6 cut(s) 415, 705, 850, 862, 940, 1120
Mly113I GGCGCC 1 cut(s) 971
MlyI GAGTC 5 cut(s) 72, 293, 393, 458, 1012
MmeI TCCRAC 2 cut(s) 189, 291
MroI TCCGGA 1 cut(s) 727
MseI TTAA 3 cut(s) 345, 615, 1166
MslI CAYNNNNRTG 2 cut(s) 431, 1146
MspI CCGG 1 cut(s) 728
MspR9I CCNGG 2 cut(s) 265, 911
MunI CAATTG 1 cut(s) 850
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 2 cut(s) 265, 911
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 521, 654
NarI GGCGCC 1 cut(s) 971
NdeI CATATG 1 cut(s) 1131
NdeII GATC 4 cut(s) 313, 370, 391, 710
NheI GCTAGC 1 cut(s) 811
NlaIII CATG 7 cut(s) 70, 130, 436, 508, 759, 1066, 1145
NlaIV GGNNCC 1 cut(s) 972
NsbI TGCGCA 1 cut(s) 282
NspI RCATGY 2 cut(s) 508, 1066
NspV TTCGAA 1 cut(s) 765
PagI TCATGA 1 cut(s) 66
PceI AGGCCT 1 cut(s) 648
PciI ACATGT 2 cut(s) 504, 1062
PciSI GCTCTTC 1 cut(s) 767
PctI GAATGC 1 cut(s) 559
PfeI GAWTC 2 cut(s) 323, 794
PflMI CCANNNNNTGG 1 cut(s) 980
PkrI GCNGC 6 cut(s) 182, 212, 285, 496, 1096, 1099
PleI GAGTC 5 cut(s) 71, 293, 392, 457, 1012
PluTI GGCGCC 1 cut(s) 974
PpsI GAGTC 5 cut(s) 71, 293, 392, 457, 1012
PscI ACATGT 2 cut(s) 504, 1062
Psp6I CCWGG 2 cut(s) 263, 909
PspGI CCWGG 2 cut(s) 263, 909
PspN4I GGNNCC 1 cut(s) 972
PspPI GGNCC 2 cut(s) 227, 318
PstI CTGCAG 1 cut(s) 739
PstNI CAGNNNCTG 2 cut(s) 679, 743
RsaI GTAC 2 cut(s) 503, 592
RsaNI GTAC 2 cut(s) 502, 591
RseI CAYNNNNRTG 2 cut(s) 431, 1146
Rsr2I CGGWCCG 1 cut(s) 318
RsrII CGGWCCG 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 767
SaqAI TTAA 3 cut(s) 345, 615, 1166
SatI GCNGC 6 cut(s) 181, 211, 284, 495, 1095, 1098
Sau3AI GATC 4 cut(s) 313, 370, 391, 710
Sau96I GGNCC 2 cut(s) 227, 318
ScaI AGTACT 1 cut(s) 592
SchI GAGTC 5 cut(s) 72, 293, 393, 458, 1012
ScrFI CCNGG 2 cut(s) 265, 911
SfaNI GCATC 1 cut(s) 470
SfcI CTRYAG 2 cut(s) 735, 1172
SfoI GGCGCC 1 cut(s) 972
SfuI TTCGAA 1 cut(s) 765
SinI GGWCC 1 cut(s) 318
SmiMI CAYNNNNRTG 2 cut(s) 431, 1146
Sse9I AATT 6 cut(s) 415, 705, 850, 862, 940, 1120
SseBI AGGCCT 1 cut(s) 648
SsiI CCGC 4 cut(s) 146, 178, 181, 306
SspDI GGCGCC 1 cut(s) 970
SspMI CTAG 4 cut(s) 224, 789, 812, 1041
StuI AGGCCT 1 cut(s) 648
StyD4I CCNGG 2 cut(s) 263, 909
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 2 cut(s) 501, 595
TaiI ACGT 5 cut(s) 33, 160, 196, 951, 966
TaqI TCGA 5 cut(s) 27, 399, 438, 709, 765
TaqII GACCGA 1 cut(s) 306
TasI AATT 6 cut(s) 415, 705, 850, 862, 940, 1120
TatI WGTACW 1 cut(s) 590
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 2 cut(s) 323, 794
Tru1I TTAA 3 cut(s) 345, 615, 1166
Tru9I TTAA 3 cut(s) 345, 615, 1166
TscAI CASTG 2 cut(s) 394, 744
TseI GCWGC 5 cut(s) 210, 283, 494, 1094, 1097
TspDTI ATGAA 7 cut(s) 83, 372, 683, 767, 1118, 1148, 1158
TspRI CASTG 2 cut(s) 394, 744
Van91I CCANNNNNTGG 1 cut(s) 980
VpaK11BI GGWCC 1 cut(s) 318
XagI CCTNNNNNAGG 1 cut(s) 234
XapI RAATTY 3 cut(s) 415, 705, 940
XbaI TCTAGA 1 cut(s) 1040
XceI RCATGY 2 cut(s) 508, 1066
XmaJI CCTAGG 1 cut(s) 223
XspI CTAG 4 cut(s) 224, 789, 812, 1041
ZraI GACGTC 1 cut(s) 31
ZrmI AGTACT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.