Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0014802

Physical Location & Seq

Genomic Coordinates Forward (+)

46260874 .. 46261376

Gene Structure 503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0344700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGACTAATAAGTTCAGTTTGGTGGCAACGGTGGTTGTGCTCACCTTTTTCACTCCAACTGCCTTCGCCGTGTGGCATACAAATTATGAAGTAGCCTCGGCAGCTGCAGAGCCTGCAGACTCTGACTATCATATTGAAGTAGCCTCGGCCGCGGCTGAGCCTGACCTTGACGAGAGTATTGAAGTAGCCTCGGCCGCTGCTGAGCCTGCGGATCCTGTGGATTATTATGATAATATTATGCCCTTGCAAGATGGGTTGTATTTGCGTTCCCCTTGGAACGCTTCCTATTGGGCTCTGCATTGGTCTCTGTCATTGCAATATTACTCCACCTCCAGGTCCACAGCCACAGCCGCAGCCGCCTTCAGTCTCACTATCACCGTCACCATCACCGTCACCACTGATGTTTTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0010016 GO:0010051 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010228 GO:0010346 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048439 GO:0048457 GO:0048507 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080006 GO:0080090 GO:0090567 GO:0090698 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905393 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

138

Amino Acids

14.95

Weight (kDa)

4.05

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014802)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23561 FvH4_7g23561 FvH4_7g23561 FvH4_7g23561
malus_domestica	MD07G1205600.v1.1
prunus_persica	Prupe.2G241700_v2.0.a1
pyrus_communis	pycom07g19240
rosa_chinensis	RchiOBHm_Chr1g0368731
rosa_laevigata	RLG00000027193
rosa_roxburghii	Rroxscaffold_4G00288320
rosa_rugosa	Rorug01G0344500 Rorug01G0344600 Rorug01G0344700
rosa_samantha	Rh1AG351600 Rh1BG315300 Rh1CG329900 Rh1DG346800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	155
AciI	CCGC	6 cut(s)	153, 155, 198, 212, 354, 360
AclWI	GGATC	2 cut(s)	209, 222
AcoI	YGGCCR	2 cut(s)	150, 195
AcuI	CTGAAG	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	336
AgsI	TTSAA	2 cut(s)	140, 185
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	312, 374
AlwI	GGATC	2 cut(s)	209, 222
AlwNI	CAGNNNCTG	2 cut(s)	116, 125
AoxI	GGCC	2 cut(s)	150, 195
ApeKI	GCWGC	4 cut(s)	104, 107, 200, 356
AspS9I	GGNCC	1 cut(s)	339
AsuHPI	GGTGA	5 cut(s)	37, 370, 376, 382, 388
AvaII	GGWCC	1 cut(s)	339
BamHI	GGATCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	4 cut(s)	94, 116, 187, 368
BccI	CCATC	2 cut(s)	248, 395
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	312, 374
BfmI	CTRYAG	2 cut(s)	108, 117
BisI	GCNGC	9 cut(s)	105, 108, 153, 156, 198, 201, 354, 357, 360
BlpI	GCTNAGC	2 cut(s)	159, 204
BlsI	GCNGC	9 cut(s)	106, 109, 154, 157, 199, 202, 355, 358, 361
Bme1390I	CCNGG	1 cut(s)	337
Bme18I	GGWCC	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	319
Bpu1102I	GCTNAGC	2 cut(s)	159, 204
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	5 cut(s)	99, 147, 153, 192, 275
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse3DI	GCAATG	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	5 cut(s)	99, 147, 153, 192, 275
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	2 cut(s)	150, 195
BseX3I	CGGCCG	2 cut(s)	150, 195
BseXI	GCAGC	4 cut(s)	94, 116, 187, 368
Bsh1236I	CGCG	1 cut(s)	155
Bsh1285I	CGRYCG	2 cut(s)	153, 198
BshFI	GGCC	2 cut(s)	152, 197
BsiEI	CGRYCG	2 cut(s)	153, 198
BsiHKAI	GWGCWC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	2 cut(s)	312, 374
BsnI	GGCC	2 cut(s)	152, 197
Bso31I	GGTCTC	1 cut(s)	312
Bsp1286I	GDGCHC	2 cut(s)	45, 298
Bsp143I	GATC	1 cut(s)	214
Bsp1720I	GCTNAGC	2 cut(s)	159, 204
BspACI	CCGC	6 cut(s)	153, 155, 198, 212, 354, 360
BspANI	GGCC	2 cut(s)	152, 197
BspCNI	CTCAG	2 cut(s)	151, 196
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	2 cut(s)	112, 121
BspPI	GGATC	2 cut(s)	209, 222
BspTNI	GGTCTC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	314
BssECI	CCNNGG	5 cut(s)	99, 147, 153, 192, 275
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	3 cut(s)	34, 382, 394
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	117, 210
BstDEI	CTNAG	2 cut(s)	159, 204
BstDSI	CCRYGG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	2 cut(s)	312, 374
BstMBI	GATC	1 cut(s)	214
BstMCI	CGRYCG	2 cut(s)	153, 198
BstMWI	GCNNNNNNNGC	7 cut(s)	104, 116, 152, 197, 209, 353, 359
BstNI	CCWGG	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	2 cut(s)	108, 117
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	4 cut(s)	94, 116, 187, 368
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BstZI	CGGCCG	2 cut(s)	150, 195
BsuRI	GGCC	2 cut(s)	152, 197
BtgI	CCRYGG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	2 cut(s)	117, 210
CaiI	CAGNNNCTG	2 cut(s)	116, 125
Cfr13I	GGNCC	1 cut(s)	339
Cfr42I	CCGCGG	1 cut(s)	156
DdeI	CTNAG	2 cut(s)	159, 204
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	2 cut(s)	150, 195
EagI	CGGCCG	2 cut(s)	150, 195
EclXI	CGGCCG	2 cut(s)	150, 195
Eco130I	CCWWGG	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	339
Eco52I	CGGCCG	2 cut(s)	150, 195
Eco57I	CTGAAG	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	275
FaiI	YATR	6 cut(s)	81, 90, 135, 231, 242, 415
Fnu4HI	GCNGC	9 cut(s)	105, 108, 153, 156, 198, 201, 354, 357, 360
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	9 cut(s)	105, 108, 153, 156, 198, 201, 354, 357, 360
GluI	GCNGC	9 cut(s)	105, 108, 153, 156, 198, 201, 354, 357, 360
GsuI	CTGGAG	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	152, 197
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	5 cut(s)	37, 370, 376, 382, 388
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	342
HpyAV	CCTTC	2 cut(s)	76, 373
HpyCH4III	ACNGT	3 cut(s)	34, 382, 394
HpyCH4V	TGCA	5 cut(s)	110, 119, 250, 301, 319
HpyF10VI	GCNNNNNNNGC	7 cut(s)	104, 116, 152, 197, 209, 353, 359
HpyF3I	CTNAG	2 cut(s)	159, 204
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	214
LpnPI	CCDG	6 cut(s)	129, 177, 222, 231, 322, 349
Lsp1109I	GCAGC	4 cut(s)	94, 116, 187, 368
MaeIII	GTNAC	2 cut(s)	382, 394
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	2 cut(s)	45, 298
MluCI	AATT	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	4 cut(s)	109, 157, 202, 343
MspA1I	CMGCKG	3 cut(s)	107, 155, 200
MspR9I	CCNGG	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	337
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	7 cut(s)	104, 116, 152, 197, 209, 353, 359
NdeII	GATC	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	216
NmeAIII	GCCGAG	3 cut(s)	80, 128, 173
NmuCI	GTSAC	2 cut(s)	382, 394
PkrI	GCNGC	9 cut(s)	106, 109, 154, 157, 199, 202, 355, 358, 361
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	339
PstI	CTGCAG	2 cut(s)	112, 121
PstNI	CAGNNNCTG	2 cut(s)	116, 125
PsuI	RGATCY	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	107
SacII	CCGCGG	1 cut(s)	156
SatI	GCNGC	9 cut(s)	105, 108, 153, 156, 198, 201, 354, 357, 360
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	339
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	2 cut(s)	45, 298
SetI	ASST	5 cut(s)	50, 109, 171, 335, 341
SfcI	CTRYAG	2 cut(s)	108, 117
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
SinI	GGWCC	1 cut(s)	339
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	6 cut(s)	153, 155, 198, 212, 354, 360
SspI	AATATT	2 cut(s)	238, 323
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	3 cut(s)	34, 382, 394
TasI	AATT	1 cut(s)	85
TauI	GCSGC	5 cut(s)	155, 158, 200, 356, 362
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	2 cut(s)	382, 394
TseI	GCWGC	4 cut(s)	104, 107, 200, 356
Tsp45I	GTSAC	2 cut(s)	382, 394
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.