Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0014802

Physical Location & Seq

Genomic Coordinates Forward (+)

46253846 .. 46254546

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0344600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGAGTAAGAGGGTAGGTTTGGCGGTGGTGGTGGCGGCAATGGTGCTCGTGTCCCCCTTTTTCAATCCAACTGCCTTCGCCGTGCGGCATAAGAATTATGAAGTAGTCTCGGCCGCTGCGGAGCCTGATTCTAACGATCGTAACGAAGTAGCCTCGGCCGATGCTGAGCCGGGTCCTGTTGATTATTATGATAATATCATGGTAAAAGACGAAAGCAGCAGAAGTACTGGATCAAAACGTCTGAAGGTCGACGACGGTTGTCCATCGTCGATATGCGATATGACAAAACCATGCAAGATTGGCTGTATTTGCGTTCCCTTTGTTCCGTTTCCTATTGGAACCTGCGTTGGTATCTGTTGTCAAATTAATCCACCTCCAGGTGCACCGCCTCTACCACCATCATCACCGTCACCATCGCCGTCACTGTCACCAGTGACGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0010016 GO:0010051 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010228 GO:0010346 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048439 GO:0048457 GO:0048507 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080006 GO:0080090 GO:0090567 GO:0090698 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905393 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

148

Amino Acids

15.56

Weight (kDa)

5.04

Isoelectric Point (pI)

67.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014802)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23561 FvH4_7g23561 FvH4_7g23561 FvH4_7g23561
malus_domestica	MD07G1205600.v1.1
prunus_persica	Prupe.2G241700_v2.0.a1
pyrus_communis	pycom07g19240
rosa_chinensis	RchiOBHm_Chr1g0368731
rosa_laevigata	RLG00000027193
rosa_roxburghii	Rroxscaffold_4G00288320
rosa_rugosa	Rorug01G0344500 Rorug01G0344600 Rorug01G0344700
rosa_samantha	Rh1AG351600 Rh1BG315300 Rh1CG329900 Rh1DG346800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	6 cut(s)	26, 38, 88, 117, 122, 389
AclWI	GGATC	1 cut(s)	241
AcoI	YGGCCR	2 cut(s)	114, 159
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	379
Alw21I	GWGCWC	2 cut(s)	51, 388
Alw26I	GTCTC	1 cut(s)	115
Alw44I	GTGCAC	1 cut(s)	384
AlwI	GGATC	1 cut(s)	241
AoxI	GGCC	2 cut(s)	114, 159
ApaLI	GTGCAC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	119, 219
AseI	ATTAAT	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	3 cut(s)	399, 405, 423
AvaII	GGWCC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	388
BauI	CACGAG	1 cut(s)	50
Bbv12I	GWGCWC	2 cut(s)	51, 388
BbvI	GCAGC	2 cut(s)	106, 231
BccI	CCATC	3 cut(s)	274, 409, 424
BceAI	ACGGC	2 cut(s)	68, 406
BciT130I	CCWGG	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	115
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	5 cut(s)	39, 89, 117, 120, 220
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	5 cut(s)	40, 90, 118, 121, 221
BmcAI	AGTACT	1 cut(s)	229
Bme1390I	CCNGG	2 cut(s)	174, 381
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	3 cut(s)	126, 177, 343
BmrFI	CCNGG	2 cut(s)	174, 381
BmsI	GCATC	1 cut(s)	154
BoxI	GACNNNNGTC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	235, 434
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	235, 434
BseSI	GKGCMC	1 cut(s)	388
BseX3I	CGGCCG	2 cut(s)	114, 159
BseXI	GCAGC	2 cut(s)	106, 231
Bsh1285I	CGRYCG	3 cut(s)	117, 142, 162
BshFI	GGCC	2 cut(s)	116, 161
BsiEI	CGRYCG	3 cut(s)	117, 142, 162
BsiHKAI	GWGCWC	2 cut(s)	51, 388
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	116, 161
Bsp1286I	GDGCHC	2 cut(s)	51, 388
Bsp143I	GATC	2 cut(s)	139, 233
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	6 cut(s)	26, 38, 88, 117, 122, 389
BspANI	GGCC	2 cut(s)	116, 161
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	3 cut(s)	126, 177, 343
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	235, 434
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	139, 233
BssSI	CACGAG	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	3 cut(s)	260, 411, 429
BstDEI	CTNAG	1 cut(s)	168
BstKTI	GATC	2 cut(s)	142, 236
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	139, 233
BstMCI	CGRYCG	3 cut(s)	117, 142, 162
BstMWI	GCNNNNNNNGC	2 cut(s)	303, 312
BstNI	CCWGG	1 cut(s)	381
BstPAI	GACNNNNGTC	1 cut(s)	261
BstSCI	CCNGG	2 cut(s)	172, 379
BstSLI	GKGCMC	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	106, 231
BstZI	CGGCCG	2 cut(s)	114, 159
BsuRI	GGCC	2 cut(s)	116, 161
BtgZI	GCGATG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	425, 441
BveI	ACCTGC	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	2 cut(s)	202, 294
CviJI	RGCY	6 cut(s)	116, 127, 155, 161, 172, 306
CviKI_1	RGCY	6 cut(s)	116, 127, 155, 161, 172, 306
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	2 cut(s)	141, 235
DpnII	GATC	2 cut(s)	139, 233
EaeI	YGGCCR	2 cut(s)	114, 159
EagI	CGGCCG	2 cut(s)	114, 159
EclXI	CGGCCG	2 cut(s)	114, 159
Eco47I	GGWCC	1 cut(s)	176
Eco52I	CGGCCG	2 cut(s)	114, 159
Eco57I	CTGAAG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	379
FaeI	CATG	2 cut(s)	205, 297
FaiI	YATR	7 cut(s)	93, 102, 192, 203, 277, 284, 295
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	2 cut(s)	201, 293
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	5 cut(s)	39, 89, 117, 120, 220
Fsp4HI	GCNGC	5 cut(s)	39, 89, 117, 120, 220
GluI	GCNGC	5 cut(s)	39, 89, 117, 120, 220
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	116, 161
HapII	CCGG	1 cut(s)	173
Hin1II	CATG	2 cut(s)	205, 297
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	3 cut(s)	399, 405, 423
Hpy166II	GTNNAC	2 cut(s)	253, 386
Hpy188I	TCNGA	1 cut(s)	246
Hpy8I	GTNNAC	2 cut(s)	253, 386
Hpy99I	CGWCG	3 cut(s)	257, 260, 274
HpyAV	CCTTC	2 cut(s)	88, 241
HpyCH4III	ACNGT	3 cut(s)	260, 411, 429
HpyCH4IV	ACGT	2 cut(s)	241, 440
HpyCH4V	TGCA	2 cut(s)	297, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	303, 312
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	2 cut(s)	241, 440
Hsp92II	CATG	2 cut(s)	205, 297
Kzo9I	GATC	2 cut(s)	139, 233
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	7 cut(s)	141, 186, 192, 216, 358, 366, 393
Lsp1109I	GCAGC	2 cut(s)	106, 231
LweI	GCATC	1 cut(s)	154
MaeII	ACGT	2 cut(s)	241, 440
MaeIII	GTNAC	5 cut(s)	143, 411, 423, 429, 436
MalI	GATC	2 cut(s)	141, 235
MboI	GATC	2 cut(s)	139, 233
MhlI	GDGCHC	2 cut(s)	51, 388
MluCI	AATT	2 cut(s)	97, 366
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	4 cut(s)	6, 166, 387, 402
MseI	TTAA	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	174, 381
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	303, 312
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	2 cut(s)	139, 233
NlaIII	CATG	2 cut(s)	205, 297
NlaIV	GGNNCC	3 cut(s)	126, 177, 343
NmeAIII	GCCGAG	2 cut(s)	92, 137
NmuCI	GTSAC	4 cut(s)	411, 423, 429, 436
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	5 cut(s)	40, 90, 118, 121, 221
Ple19I	CGATCG	1 cut(s)	142
PpuMI	RGGWCCY	1 cut(s)	176
PshAI	GACNNNNGTC	1 cut(s)	261
PshBI	ATTAAT	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	3 cut(s)	126, 177, 343
PspPI	GGNCC	1 cut(s)	176
PspPPI	RGGWCCY	1 cut(s)	176
PvuI	CGATCG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SalI	GTCGAC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	5 cut(s)	39, 89, 117, 120, 220
Sau3AI	GATC	2 cut(s)	139, 233
Sau96I	GGNCC	1 cut(s)	176
ScaI	AGTACT	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	174, 381
SduI	GDGCHC	2 cut(s)	51, 388
SetI	ASST	7 cut(s)	22, 244, 252, 347, 379, 385, 443
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	2 cut(s)	97, 366
SsiI	CCGC	6 cut(s)	26, 38, 88, 117, 122, 389
StyD4I	CCNGG	2 cut(s)	172, 379
TaaI	ACNGT	3 cut(s)	260, 411, 429
TaiI	ACGT	2 cut(s)	244, 443
TaqI	TCGA	2 cut(s)	252, 272
TasI	AATT	2 cut(s)	97, 366
TatI	WGTACW	1 cut(s)	227
TauI	GCSGC	3 cut(s)	41, 91, 119
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	2 cut(s)	432, 441
TseFI	GTSAC	4 cut(s)	411, 423, 429, 436
TseI	GCWGC	2 cut(s)	119, 219
Tsp45I	GTSAC	4 cut(s)	411, 423, 429, 436
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	432, 441
VneI	GTGCAC	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	176
VspI	ATTAAT	1 cut(s)	369
XmiI	GTMKAC	1 cut(s)	252
ZrmI	AGTACT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.