Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014802

Physical Location & Seq

Genomic Coordinates Forward (+)

9180656 .. 9183302

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTACGTCTTCTTATCCTTCATCAAACCACTATCAGTTCATACTAACACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGCTTCACAACCCATCCATGGCGGACGAGGGTTTCGAAGCGTTCCACGTCCCCCGACAAAGCAGAAGAGACCAGGTCCGAGTCGTGAACCTCCTAACCAACCCACCACAGCCACAACTCTCACTATTCACACACTCCACCATGCCAACCCCCCAACCACCACTTTCCCCACATTTCTCCGATCACGACCACCGTGTTTCATTTGAAGGTGGTGAGTTCAGAAGCCCTGTTCCCCTAGGCCCTTTCACGGGCTACGCTTCCATACTGAAGCGGTCCAGGTTTCTCAAGCCTGCTCAGCAGCTCCTTCAAGACTTCTGCGGGTCGGATCGATCCGATTCGAATCTTCCTCTCCTTAACTGCTTCATTGGAAGAGGAAGAGATCAGATTAGTGGAGTGAGTGATCGGGTCGAGCTTCAGTTCAAGAATTCTAGGCTCACCATTATGCTCGAGGAGGTCTACAAGAGATATAAGTTATACTGCCAGCAGATGGAGTCACTTGTTGCGTCATTTGAAACCATTGATGGGCTTGGAAGTGCAGCCCCATACATATCTTTTGCCATCAAAGCCATTTTGAAGCACTTTGGTTGCTTGAAGAATGCCATTTTGGACAAACTTCAATCCAAAGGCAAGAGCAGTGTCGGTGATTTTAGCCATGTTAAAGATGAGATTAGGGGGTTTCGGGGGTTTCTAGAAGAGGCTTTCATAGCCAAAACCCAAGTCATGAGAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0010016 GO:0010051 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010228 GO:0010346 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048439 GO:0048457 GO:0048507 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080006 GO:0080090 GO:0090567 GO:0090698 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905393 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

270

Amino Acids

30.4

Weight (kDa)

9.28

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	115 - 228	5.1e-28	Associated with HOX

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014802)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23561 FvH4_7g23561 FvH4_7g23561 FvH4_7g23561
malus_domestica	MD07G1205600.v1.1
prunus_persica	Prupe.2G241700_v2.0.a1
pyrus_communis	pycom07g19240
rosa_chinensis	RchiOBHm_Chr1g0368731
rosa_laevigata	RLG00000027193
rosa_roxburghii	Rroxscaffold_4G00288320
rosa_rugosa	Rorug01G0344500 Rorug01G0344600 Rorug01G0344700
rosa_samantha	Rh1AG351600 Rh1BG315300 Rh1CG329900 Rh1DG346800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	568
AccI	GTMKAC	1 cut(s)	537
AciI	CCGC	3 cut(s)	104, 352, 399
AclWI	GGATC	2 cut(s)	405, 414
AcsI	RAATTY	1 cut(s)	505
AcuI	CTGAAG	2 cut(s)	368, 479
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	5 cut(s)	100, 328, 329, 568, 603
AgsI	TTSAA	7 cut(s)	287, 389, 502, 593, 655, 673, 698
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	2 cut(s)	153, 356
AjuI	GAANNNNNNNTTGG	2 cut(s)	668, 700
AluBI	AGCT	3 cut(s)	85, 382, 493
AluI	AGCT	3 cut(s)	85, 382, 493
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	405, 414
Ama87I	CYCGRG	1 cut(s)	527
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	2 cut(s)	379, 617
ApoI	RAATTY	1 cut(s)	505
ArsI	GACNNNNNNTTYG	3 cut(s)	98, 130, 783
AspA2I	CCTAGG	1 cut(s)	316
AspS9I	GGNCC	3 cut(s)	157, 320, 354
AsuHPI	GGTGA	3 cut(s)	305, 508, 734
AsuII	TTCGAA	2 cut(s)	117, 419
AvaI	CYCGRG	1 cut(s)	527
AvaII	GGWCC	2 cut(s)	157, 354
AvrII	CCTAGG	1 cut(s)	316
BbvI	GCAGC	2 cut(s)	391, 629
BccI	CCATC	4 cut(s)	103, 562, 596, 647
BciT130I	CCWGG	2 cut(s)	155, 358
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	3 cut(s)	317, 510, 770
BisI	GCNGC	2 cut(s)	380, 618
BlnI	CCTAGG	1 cut(s)	316
BlpI	GCTNAGC	1 cut(s)	375
BlsI	GCNGC	2 cut(s)	381, 619
Bme1390I	CCNGG	2 cut(s)	155, 358
Bme18I	GGWCC	2 cut(s)	157, 354
BmeT110I	CYCGRG	1 cut(s)	527
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	3 cut(s)	157, 320, 354
BmrFI	CCNGG	2 cut(s)	155, 358
Bpu1102I	GCTNAGC	1 cut(s)	375
Bpu14I	TTCGAA	2 cut(s)	117, 419
BpuEI	CTTGAG	2 cut(s)	65, 350
Bsa29I	ATCGAT	1 cut(s)	409
BsaBI	GATNNNNATC	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	99, 316
Bsc4I	CCNNNNNNNGG	5 cut(s)	100, 328, 329, 568, 603
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	155, 358
BseCI	ATCGAT	1 cut(s)	409
BseDI	CCNNGG	2 cut(s)	99, 316
BseGI	GGATG	1 cut(s)	95
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	5 cut(s)	100, 328, 329, 568, 603
BseMII	CTCAG	1 cut(s)	389
BseRI	GAGGAG	1 cut(s)	545
BseXI	GCAGC	2 cut(s)	391, 629
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	1 cut(s)	321
BshVI	ATCGAT	1 cut(s)	409
BsiHKCI	CYCGRG	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	5 cut(s)	100, 328, 329, 568, 603
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	1 cut(s)	321
Bso31I	GGTCTC	1 cut(s)	144
BsoBI	CYCGRG	1 cut(s)	527
Bsp119I	TTCGAA	2 cut(s)	117, 419
Bsp143I	GATC	5 cut(s)	262, 406, 410, 460, 481
Bsp1720I	GCTNAGC	1 cut(s)	375
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	3 cut(s)	104, 352, 399
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	388
BspDI	ATCGAT	1 cut(s)	409
BspHI	TCATGA	1 cut(s)	801
BspPI	GGATC	2 cut(s)	405, 414
BspT104I	TTCGAA	2 cut(s)	117, 419
BspTNI	GGTCTC	1 cut(s)	144
BssECI	CCNNGG	2 cut(s)	99, 316
BssMI	GATC	5 cut(s)	262, 406, 410, 460, 481
BssT1I	CCWWGG	2 cut(s)	99, 316
Bst2UI	CCWGG	2 cut(s)	155, 358
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	4 cut(s)	142, 445, 451, 768
BstBI	TTCGAA	2 cut(s)	117, 419
BstC8I	GCNNGC	2 cut(s)	372, 563
BstDEI	CTNAG	1 cut(s)	375
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	95
BstKTI	GATC	5 cut(s)	265, 409, 413, 463, 484
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	5 cut(s)	262, 406, 410, 460, 481
BstMWI	GCNNNNNNNGC	3 cut(s)	376, 644, 785
BstNI	CCWGG	2 cut(s)	155, 358
BstSCI	CCNGG	2 cut(s)	153, 356
BstV1I	GCAGC	2 cut(s)	391, 629
Bsu15I	ATCGAT	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	321
BsuTUI	ATCGAT	1 cut(s)	409
BtgI	CCRYGG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	721
BtsIMutI	CAGTG	1 cut(s)	721
Cac8I	GCNNGC	2 cut(s)	372, 563
CciI	TCATGA	1 cut(s)	801
Cfr13I	GGNCC	3 cut(s)	157, 320, 354
ClaI	ATCGAT	1 cut(s)	409
CseI	GACGC	1 cut(s)	573
CsiI	ACCWGGT	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	4 cut(s)	100, 223, 734, 802
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	5 cut(s)	264, 408, 412, 462, 483
DpnII	GATC	5 cut(s)	262, 406, 410, 460, 481
Eam1104I	CTCTTC	4 cut(s)	142, 445, 451, 768
EarI	CTCTTC	4 cut(s)	142, 445, 451, 768
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	99, 316
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	2 cut(s)	157, 354
Eco57I	CTGAAG	2 cut(s)	368, 479
Eco88I	CYCGRG	1 cut(s)	527
EcoO109I	RGGNCCY	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	153, 356
EcoT14I	CCWWGG	2 cut(s)	99, 316
ErhI	CCWWGG	2 cut(s)	99, 316
FaeI	CATG	4 cut(s)	103, 226, 737, 805
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	4 cut(s)	99, 222, 733, 801
FauI	CCCGC	1 cut(s)	392
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	2 cut(s)	380, 618
FokI	GGATG	1 cut(s)	82
Fsp4HI	GCNGC	2 cut(s)	380, 618
FspBI	CTAG	3 cut(s)	317, 510, 770
GluI	GCNGC	2 cut(s)	380, 618
HaeIII	GGCC	1 cut(s)	321
HgaI	GACGC	1 cut(s)	573
Hin1II	CATG	4 cut(s)	103, 226, 737, 805
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	4 cut(s)	162, 416, 421, 572
HphI	GGTGA	3 cut(s)	305, 508, 734
Hpy166II	GTNNAC	2 cut(s)	169, 538
Hpy188I	TCNGA	6 cut(s)	161, 262, 302, 406, 415, 465
Hpy188III	TCNNGA	6 cut(s)	166, 266, 389, 502, 770, 802
Hpy8I	GTNNAC	2 cut(s)	169, 538
HpyAV	CCTTC	3 cut(s)	28, 281, 395
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	2 cut(s)	6, 129
HpyCH4V	TGCA	1 cut(s)	617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	376, 644, 785
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	2 cut(s)	6, 129
Hsp92II	CATG	4 cut(s)	103, 226, 737, 805
Kzo9I	GATC	5 cut(s)	262, 406, 410, 460, 481
LmnI	GCTCC	1 cut(s)	387
LpnPI	CCDG	7 cut(s)	140, 167, 321, 343, 370, 384, 575
Lsp1109I	GCAGC	2 cut(s)	391, 629
MabI	ACCWGGT	1 cut(s)	153
MaeI	CTAG	3 cut(s)	317, 510, 770
MaeII	ACGT	2 cut(s)	6, 129
MaeIII	GTNAC	1 cut(s)	573
MalI	GATC	5 cut(s)	264, 408, 412, 462, 483
MboI	GATC	5 cut(s)	262, 406, 410, 460, 481
MboII	GAAGA	6 cut(s)	159, 416, 462, 468, 685, 785
MluCI	AATT	1 cut(s)	505
MlyI	GAGTC	2 cut(s)	171, 581
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	8 cut(s)	61, 103, 182, 438, 446, 523, 526, 769
MseI	TTAA	2 cut(s)	435, 738
MslI	CAYNNNNRTG	1 cut(s)	521
MspR9I	CCNGG	2 cut(s)	155, 358
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	2 cut(s)	155, 358
MwoI	GCNNNNNNNGC	3 cut(s)	376, 644, 785
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	5 cut(s)	262, 406, 410, 460, 481
NlaIII	CATG	4 cut(s)	103, 226, 737, 805
NmuCI	GTSAC	1 cut(s)	573
NspV	TTCGAA	2 cut(s)	117, 419
PaeR7I	CTCGAG	1 cut(s)	527
PagI	TCATGA	1 cut(s)	801
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	682
PfeI	GAWTC	2 cut(s)	416, 421
PflFI	GACNNNGTC	1 cut(s)	155
PflMI	CCANNNNNTGG	1 cut(s)	568
PkrI	GCNGC	2 cut(s)	381, 619
PleI	GAGTC	2 cut(s)	170, 580
PpsI	GAGTC	2 cut(s)	170, 580
Psp6I	CCWGG	2 cut(s)	153, 356
PspGI	CCWGG	2 cut(s)	153, 356
PspPI	GGNCC	3 cut(s)	157, 320, 354
PspXI	VCTCGAGB	1 cut(s)	527
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	2 cut(s)	435, 738
SatI	GCNGC	2 cut(s)	380, 618
Sau3AI	GATC	5 cut(s)	262, 406, 410, 460, 481
Sau96I	GGNCC	3 cut(s)	157, 320, 354
SchI	GAGTC	2 cut(s)	171, 581
ScrFI	CCNGG	2 cut(s)	155, 358
SexAI	ACCWGGT	1 cut(s)	153
Sfr274I	CTCGAG	1 cut(s)	527
SfuI	TTCGAA	2 cut(s)	117, 419
SinI	GGWCC	2 cut(s)	157, 354
SlaI	CTCGAG	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	3 cut(s)	80, 365, 527
SmoI	CTYRAG	3 cut(s)	80, 365, 527
Sse9I	AATT	1 cut(s)	505
SsiI	CCGC	3 cut(s)	104, 352, 399
SspMI	CTAG	3 cut(s)	317, 510, 770
StyD4I	CCNGG	2 cut(s)	153, 356
StyI	CCWWGG	2 cut(s)	99, 316
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	2 cut(s)	9, 132
TaqI	TCGA	5 cut(s)	117, 409, 419, 489, 528
TasI	AATT	1 cut(s)	505
TfiI	GAWTC	2 cut(s)	416, 421
Tru1I	TTAA	2 cut(s)	435, 738
Tru9I	TTAA	2 cut(s)	435, 738
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	1 cut(s)	573
TseI	GCWGC	2 cut(s)	379, 617
Tsp45I	GTSAC	1 cut(s)	573
TspDTI	ATGAA	5 cut(s)	10, 29, 270, 433, 772
TspRI	CASTG	1 cut(s)	721
Tth111I	GACNNNGTC	1 cut(s)	155
Van91I	CCANNNNNTGG	1 cut(s)	568
VpaK11BI	GGWCC	2 cut(s)	157, 354
XapI	RAATTY	1 cut(s)	505
XbaI	TCTAGA	1 cut(s)	769
XhoI	CTCGAG	1 cut(s)	527
XmaJI	CCTAGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	3 cut(s)	317, 510, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.