Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0014802

Physical Location & Seq

Genomic Coordinates Forward (+)

46251515 .. 46252403

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0344500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAAGATTAAGGTAGGTTGGTTGCTGGTGGTGGCCTTGCTTGTGTCCACCTTTTTTGCTCCAACTGCATTTGCCGTGCAGCGCAAGAATAATGAAATAGCCAGAGCTGCTTCTGTTGCCGATGATGATGACGATGACGATGATCCGAAAAATGGGTGTAAAGGTTCGGTATGCAATATGATCCTATTCCCTTGTCGGCCAGGCTGTGTTTGCGTCCCCATTGGAATGTTACCTATAGGTATCTGCGCTGGTATCTGTTGCGATAGTCCATCTCCAACACCACCGTCGCCTCCTACGCCACCGTCACCTCCTCCTAAGCCACCGACACCTCCTCCAACACCGGCACCTCCCGAGCCACCGTCACCTCCTCCAACGCCACCGGCACCTCCCAAGCCACCGTCACCTCCTCCCACGCCTCTACCACCTCATTTTCCAAATCCGGCACATCATCCTCCGACTCCACCACGTCAGCCTCCAACGCTAGCGCCCCGTCCTCCCAAGCCACCGTCATTGCCTCAGGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0010016 GO:0010051 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010228 GO:0010346 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048439 GO:0048457 GO:0048507 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080006 GO:0080090 GO:0090567 GO:0090698 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905393 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

175

Amino Acids

18.16

Weight (kDa)

8.14

Isoelectric Point (pI)

75.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014802)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23561 FvH4_7g23561 FvH4_7g23561 FvH4_7g23561
malus_domestica	MD07G1205600.v1.1
prunus_persica	Prupe.2G241700_v2.0.a1
pyrus_communis	pycom07g19240
rosa_chinensis	RchiOBHm_Chr1g0368731
rosa_laevigata	RLG00000027193
rosa_roxburghii	Rroxscaffold_4G00288320
rosa_rugosa	Rorug01G0344500 Rorug01G0344600 Rorug01G0344700
rosa_samantha	Rh1AG351600 Rh1BG315300 Rh1CG329900 Rh1DG346800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	343, 382
AclWI	GGATC	2 cut(s)	137, 175
AcoI	YGGCCR	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	152
AjiI	CACGTC	1 cut(s)	467
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
AlwI	GGATC	2 cut(s)	137, 175
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	2 cut(s)	33, 197
ApeKI	GCWGC	2 cut(s)	79, 107
AspLEI	GCGC	3 cut(s)	84, 248, 487
AsuHPI	GGTGA	3 cut(s)	297, 354, 393
AsuNHI	GCTAGC	1 cut(s)	481
AvaI	CYCGRG	1 cut(s)	350
AxyI	CCTNAGG	1 cut(s)	516
BanI	GGYRCC	2 cut(s)	343, 382
BbvI	GCAGC	2 cut(s)	91, 94
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	201
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	488
BisI	GCNGC	2 cut(s)	80, 108
BlsI	GCNGC	2 cut(s)	81, 109
Bme1390I	CCNGG	1 cut(s)	201
BmeT110I	CYCGRG	1 cut(s)	350
BmgBI	CACGTC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	345, 384
BmrFI	CCNGG	1 cut(s)	201
BmtI	GCTAGC	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse118I	RCCGGY	2 cut(s)	340, 379
Bse21I	CCTNAGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMI	GCAATG	1 cut(s)	509
BseRI	GAGGAG	4 cut(s)	300, 321, 357, 396
BseXI	GCAGC	2 cut(s)	91, 94
BsgI	GTGCAG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	35, 199
BshNI	GGYRCC	2 cut(s)	343, 382
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	3 cut(s)	341, 380, 440
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	35, 199
BsoBI	CYCGRG	1 cut(s)	350
Bsp143I	GATC	2 cut(s)	142, 180
BspANI	GGCC	2 cut(s)	35, 199
BspLI	GGNNCC	2 cut(s)	345, 384
BspOI	GCTAGC	1 cut(s)	485
BspPI	GGATC	2 cut(s)	137, 175
BspT107I	GGYRCC	2 cut(s)	343, 382
BsrDI	GCAATG	1 cut(s)	509
BsrFI	RCCGGY	2 cut(s)	340, 379
BssAI	RCCGGY	2 cut(s)	340, 379
BssMI	GATC	2 cut(s)	142, 180
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	5 cut(s)	285, 303, 360, 399, 507
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	2 cut(s)	315, 516
BstF5I	GGATG	1 cut(s)	448
BstH2I	RGCGCY	1 cut(s)	488
BstHHI	GCGC	3 cut(s)	84, 248, 487
BstKTI	GATC	2 cut(s)	145, 183
BstMBI	GATC	2 cut(s)	142, 180
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 107, 116, 210, 295, 478
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	91, 94
Bsu36I	CCTNAGG	1 cut(s)	516
BsuRI	GGCC	2 cut(s)	35, 199
BtrI	CACGTC	1 cut(s)	467
BtsCI	GGATG	1 cut(s)	448
Cac8I	GCNNGC	1 cut(s)	483
CfoI	GCGC	3 cut(s)	84, 248, 487
Cfr10I	RCCGGY	2 cut(s)	340, 379
CseI	GACGC	1 cut(s)	202
CspCI	CAANNNNNGTGG	4 cut(s)	37, 72, 492, 527
DdeI	CTNAG	2 cut(s)	315, 516
DpnI	GATC	2 cut(s)	144, 182
DpnII	GATC	2 cut(s)	142, 180
EaeI	YGGCCR	1 cut(s)	197
Eco81I	CCTNAGG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	199
FaiI	YATR	3 cut(s)	172, 179, 236
FaqI	GGGAC	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	80, 108
FokI	GGATG	1 cut(s)	435
Fsp4HI	GCNGC	2 cut(s)	80, 108
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	3 cut(s)	83, 247, 486
GluI	GCNGC	2 cut(s)	80, 108
HaeII	RGCGCY	1 cut(s)	488
HaeIII	GGCC	2 cut(s)	35, 199
HapII	CCGG	3 cut(s)	341, 380, 440
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	3 cut(s)	84, 248, 487
Hin6I	GCGC	3 cut(s)	82, 246, 485
HinP1I	GCGC	3 cut(s)	82, 246, 485
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	3 cut(s)	341, 380, 440
HphI	GGTGA	3 cut(s)	297, 354, 393
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	2 cut(s)	147, 456
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	1 cut(s)	289
HpyCH4III	ACNGT	5 cut(s)	285, 303, 360, 399, 507
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	3 cut(s)	68, 79, 174
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 107, 116, 210, 295, 478
HpyF3I	CTNAG	2 cut(s)	315, 516
HpySE526I	ACGT	1 cut(s)	466
HspAI	GCGC	3 cut(s)	82, 246, 485
Kzo9I	GATC	2 cut(s)	142, 180
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	9 cut(s)	11, 115, 186, 213, 234, 354, 393, 453, 503
Lsp1109I	GCAGC	2 cut(s)	91, 94
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	4 cut(s)	228, 303, 360, 399
MalI	GATC	2 cut(s)	144, 182
MboI	GATC	2 cut(s)	142, 180
MboII	GAAGA	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	6 cut(s)	86, 299, 359, 395, 479, 500
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	3 cut(s)	341, 380, 440
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	6 cut(s)	65, 107, 116, 210, 295, 478
NdeII	GATC	2 cut(s)	142, 180
NheI	GCTAGC	1 cut(s)	481
NlaIV	GGNNCC	2 cut(s)	345, 384
NmuCI	GTSAC	3 cut(s)	303, 360, 399
PkrI	GCNGC	2 cut(s)	81, 109
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	345, 384
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	2 cut(s)	80, 108
Sau3AI	GATC	2 cut(s)	142, 180
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	224
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	199
TaaI	ACNGT	5 cut(s)	285, 303, 360, 399, 507
TaiI	ACGT	1 cut(s)	469
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseFI	GTSAC	3 cut(s)	303, 360, 399
TseI	GCWGC	2 cut(s)	79, 107
Tsp45I	GTSAC	3 cut(s)	303, 360, 399
TspDTI	ATGAA	2 cut(s)	17, 108
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.