FvH4_7g24400

ABC1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007906
Physical Location & Seq
Forward (+)
18843575 .. 18849181
5607 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24400.t1

Sequence Viewer

Length: 1611 bp
ATGGCCACGCGATCCTTATGGCGCGCAAAGCTTGCTCTGTCCGCAACCGCCCTCTTCGGCGGTGCCGCCGCCGCGACAATCACCACCTCCGAAGACCCCGCCATAACTATGAAGCTCTACTCCACCGTCCCCGTCCGCCTCTTTCGCGACTCCCTCACAGCTGCCGCCGTCGCCTTCGATTATGAGTATTCACTGTGGGGATTGCCTGAAGGAAGCAGTGAGAGGTTAAAGGCTAAACATGAAGTTCACCTCAGGTCTGCGCGTAAGCTACAGGAATTGTGTTTCAAAAATGGAGGAATATACATCAAGCTCGGTCAACATATTGGGCAACTGGAATACTTGGTACCAGAGGAGTATGTCCATACAATGAGAGAGTCTATGTTGAATAAATGTCCGGTTTCTTCTTATGAACAAGTGTGTGAAGTCATTGAGAAGGAGCTTGGAGATAAGCCGGAAAAAATATTTTCTGAATTTGATCCTGTTCCAGTAGCAAGTGCTTCTCTTGCACAAGTTCATGTTGCTCGCACACATGATGGCAAAAAAGTTGCTGTGAAGGTTCAGCACACACACATGACAGATACTGCAGCTGCGGATTGTGCTACTGTAGATGTGATTGTGAACACCCTGCACCGGGTTTTCCCTTCTTTTGATTATAGGTGGTTGATTGTTGAGATGCGTGAAAGTTTACCCAAGGAACTAGATTTCTTAAACGAAGCCAAGAACAGTGAGAAATGCCTGCATAATTTTCTGAAGCTTTCTCCTCGAATTGCAGCTTATGTATATGCACCTAAGGTGTATTGGAATCTAAGCACCTCAAAGTTGTTGACCATGGAATATATTGATGGAGCACAAGTAAATGATGTCAAGACGATGAAAAAACTTGGGTTACAACCCCAGGAAGTTGCGAGATTGGTCAGTGAAACTTTTGCCGAAATGATGTTCAAACATGGGTTTGTGCATTGTGATCCACATGCTGCAAACTTAATAGTTCGTCCTCTTCCATCTAGCAGAAGGAGCATTCTAGGCAAGAGAAAACCACAGTTGGTTCTTCTAGACCATGGTCTTTATAAAGAACTTGATGATGAGACCAGAACAAACTATGCTGCACTTTGGAAGGCATTGATATTTTCTGATGGCAATGCGATAAAGAAACATAGTGCGAAATTAGGTGCCGGAGAGGATCTGTATGCTTTATTTGCAGGAATTCTTACTATGAGGCCTTGGAATAGGGTCATTGACACATCCGTTGATCACTTGGTTATACAAGGAAATGACAGTGACCGTTCTGAACTTCAGATGTATGCTTCTCAGTACTTCCCCCAAATTACAGAGCTTCTGAGGAGGCTGCCACGTGTAATTCTCCTAATGCTGAAGACTAATGATTGTTTACGATCAGTTAGCAATGCTCTGTTGCAGGAACCTTCTCTCGAGACATTCATGATTGTTGGAAGAATTTCTTCTGAAGCCATCATCGAGTCGAAACTACAAAAGAGATCCTTTTTGTCTTGGTTGAGTGCCTGGTTAGACGAATTCCAATTAGAAGCTCGGCTTTTCATAATGCGAATAGCCTTGTGGCTTCTGCGAGTCAGGAAAGTGTTGGTACTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

537

Amino Acids

60.81

Weight (kDa)

8.82

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 127 - 385 2.9e-83 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1068
Acc65I GGTACC 1 cut(s) 343
AccB1I GGYRCC 3 cut(s) 62, 343, 1169
AccII CGCG 5 cut(s) 10, 24, 74, 147, 262
AclWI GGATC 5 cut(s) 6, 470, 959, 1188, 1488
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 470, 1203, 1452, 1529
AcuI CTGAAG 5 cut(s) 228, 770, 1277, 1391, 1482
AcvI CACGTG 1 cut(s) 1352
AfaI GTAC 3 cut(s) 345, 1313, 1602
AfiI CCNNNNNNNGG 2 cut(s) 630, 631
AflIII ACRYGT 1 cut(s) 1351
AgsI TTSAA 3 cut(s) 286, 385, 943
AjnI CCWGG 2 cut(s) 894, 1517
Alw21I GWGCWC 1 cut(s) 850
Alw26I GTCTC 2 cut(s) 1079, 1424
AlwI GGATC 5 cut(s) 6, 470, 959, 1188, 1488
AlwNI CAGNNNCTG 1 cut(s) 581
Ama87I CYCGRG 1 cut(s) 1427
AoxI GGCC 2 cut(s) 3, 1217
ApeKI GCWGC 7 cut(s) 161, 584, 587, 770, 974, 1103, 1345
ApoI RAATTY 4 cut(s) 470, 1203, 1452, 1529
Asp700I GAANNNNTTC 2 cut(s) 1453, 1456
Asp718I GGTACC 1 cut(s) 343
AspLEI GCGC 3 cut(s) 24, 26, 262
AsuC2I CCSGG 1 cut(s) 632
AsuHPI GGTGA 2 cut(s) 73, 239
AvaI CYCGRG 1 cut(s) 1427
AxyI CCTNAGG 2 cut(s) 251, 789
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 3 cut(s) 62, 343, 1169
BbrPI CACGTG 1 cut(s) 1352
BbsI GAAGAC 2 cut(s) 99, 1379
Bbv12I GWGCWC 1 cut(s) 850
BbvI GCAGC 7 cut(s) 148, 574, 596, 782, 961, 1090, 1332
BccI CCATC 5 cut(s) 527, 836, 1009, 1127, 1475
BceAI ACGGC 1 cut(s) 152
BciT130I CCWGG 2 cut(s) 896, 1519
BclI TGATCA 1 cut(s) 1249
BcnI CCSGG 1 cut(s) 632
BcoDI GTCTC 2 cut(s) 1079, 1424
BfaI CTAG 4 cut(s) 698, 1005, 1022, 1052
BfmI CTRYAG 3 cut(s) 269, 582, 603
BmcAI AGTACT 1 cut(s) 1313
Bme1390I CCNGG 3 cut(s) 632, 896, 1519
BmeT110I CYCGRG 1 cut(s) 1427
BmiI GGNNCC 4 cut(s) 64, 345, 1171, 1419
BmrFI CCNGG 3 cut(s) 632, 896, 1519
BmsI GCATC 1 cut(s) 663
BoxI GACNNNNGTC 1 cut(s) 1059
BpiI GAAGAC 2 cut(s) 99, 1379
BpuMI CCSGG 1 cut(s) 632
BsaAI YACGTR 1 cut(s) 1352
BsaI GGTCTC 1 cut(s) 1079
BsaJI CCNNGG 5 cut(s) 690, 828, 894, 1057, 1220
BsaWI WCCGGW 1 cut(s) 394
BsaXI ACNNNNNCTCC 2 cut(s) 837, 867
Bsc4I CCNNNNNNNGG 2 cut(s) 630, 631
Bse1I ACTGG 2 cut(s) 336, 485
Bse21I CCTNAGG 2 cut(s) 251, 789
Bse3DI GCAATG 2 cut(s) 1144, 1408
BseBI CCWGG 2 cut(s) 896, 1519
BseDI CCNNGG 5 cut(s) 690, 828, 894, 1057, 1220
BseGI GGATG 1 cut(s) 1241
BseLI CCNNNNNNNGG 2 cut(s) 630, 631
BseMI GCAATG 2 cut(s) 1144, 1408
BseMII CTCAG 3 cut(s) 265, 1322, 1328
BseNI ACTGG 2 cut(s) 336, 485
BsePI GCGCGC 1 cut(s) 22
BseRI GAGGAG 3 cut(s) 365, 750, 1354
BseXI GCAGC 7 cut(s) 148, 574, 596, 782, 961, 1090, 1332
BsgI GTGCAG 2 cut(s) 611, 1089
Bsh1236I CGCG 5 cut(s) 10, 24, 74, 147, 262
BshFI GGCC 2 cut(s) 5, 1219
BshNI GGYRCC 3 cut(s) 62, 343, 1169
BsiHKAI GWGCWC 1 cut(s) 850
BsiHKCI CYCGRG 1 cut(s) 1427
BsiSI CCGG 4 cut(s) 395, 452, 631, 1173
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 630, 631
BsmAI GTCTC 2 cut(s) 1079, 1424
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 1017
BsnI GGCC 2 cut(s) 5, 1219
Bso31I GGTCTC 1 cut(s) 1079
BsoBI CYCGRG 1 cut(s) 1427
Bsp1286I GDGCHC 1 cut(s) 850
Bsp143I GATC 7 cut(s) 11, 475, 964, 1180, 1249, 1391, 1493
Bsp19I CCATGG 2 cut(s) 828, 1057
Bsp68I TCGCGA 1 cut(s) 147
BspANI GGCC 2 cut(s) 5, 1219
BspCNI CTCAG 3 cut(s) 264, 1321, 1329
BspFNI CGCG 5 cut(s) 10, 24, 74, 147, 262
BspHI TCATGA 1 cut(s) 1437
BspLI GGNNCC 4 cut(s) 64, 345, 1171, 1419
BspMAI CTGCAG 1 cut(s) 586
BspPI GGATC 5 cut(s) 6, 470, 959, 1188, 1488
BspT107I GGYRCC 3 cut(s) 62, 343, 1169
BspTNI GGTCTC 1 cut(s) 1079
BsrDI GCAATG 2 cut(s) 1144, 1408
BsrI ACTGG 2 cut(s) 336, 485
BssECI CCNNGG 5 cut(s) 690, 828, 894, 1057, 1220
BssHII GCGCGC 1 cut(s) 22
BssMI GATC 7 cut(s) 11, 475, 964, 1180, 1249, 1391, 1493
BssT1I CCWWGG 4 cut(s) 690, 828, 1057, 1220
Bst2UI CCWGG 2 cut(s) 896, 1519
Bst4CI ACNGT 7 cut(s) 127, 195, 604, 725, 1041, 1277, 1283
Bst6I CTCTTC 2 cut(s) 59, 1002
BstAPI GCANNNNNTGC 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 1352
BstC8I GCNNGC 4 cut(s) 24, 33, 523, 737
BstDEI CTNAG 5 cut(s) 251, 789, 806, 1308, 1337
BstDSI CCRYGG 2 cut(s) 828, 1057
BstF5I GGATG 1 cut(s) 1241
BstFNI CGCG 5 cut(s) 10, 24, 74, 147, 262
BstHHI GCGC 3 cut(s) 24, 26, 262
BstKTI GATC 7 cut(s) 14, 478, 967, 1183, 1252, 1394, 1496
BstMAI GTCTC 2 cut(s) 1079, 1424
BstMBI GATC 7 cut(s) 11, 475, 964, 1180, 1249, 1391, 1493
BstNI CCWGG 2 cut(s) 896, 1519
BstNSI RCATGY 1 cut(s) 974
BstPAI GACNNNNGTC 1 cut(s) 1059
BstSCI CCNGG 3 cut(s) 630, 894, 1517
BstSFI CTRYAG 3 cut(s) 269, 582, 603
BstUI CGCG 5 cut(s) 10, 24, 74, 147, 262
BstV1I GCAGC 7 cut(s) 148, 574, 596, 782, 961, 1090, 1332
BstV2I GAAGAC 2 cut(s) 99, 1379
BstX2I RGATCY 2 cut(s) 1180, 1493
BstYI RGATCY 2 cut(s) 1180, 1493
Bsu36I CCTNAGG 2 cut(s) 251, 789
BsuRI GGCC 2 cut(s) 5, 1219
BtgI CCRYGG 2 cut(s) 828, 1057
BtsCI GGATG 1 cut(s) 1241
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 5 cut(s) 191, 223, 730, 922, 1282
BtuMI TCGCGA 1 cut(s) 147
Cac8I GCNNGC 4 cut(s) 24, 33, 523, 737
CaiI CAGNNNCTG 1 cut(s) 581
CciI TCATGA 1 cut(s) 1437
CfoI GCGC 3 cut(s) 24, 26, 262
Csp6I GTAC 3 cut(s) 344, 1312, 1601
CviAII CATG 9 cut(s) 239, 515, 530, 571, 829, 947, 971, 1058, 1438
CviQI GTAC 3 cut(s) 344, 1312, 1601
DdeI CTNAG 5 cut(s) 251, 789, 806, 1308, 1337
DpnI GATC 7 cut(s) 13, 477, 966, 1182, 1251, 1393, 1495
DpnII GATC 7 cut(s) 11, 475, 964, 1180, 1249, 1391, 1493
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 59, 1002
EarI CTCTTC 2 cut(s) 59, 1002
EciI GGCGGA 1 cut(s) 125
Eco130I CCWWGG 4 cut(s) 690, 828, 1057, 1220
Eco147I AGGCCT 1 cut(s) 1219
Eco31I GGTCTC 1 cut(s) 1079
Eco57I CTGAAG 5 cut(s) 228, 770, 1277, 1391, 1482
Eco72I CACGTG 1 cut(s) 1352
Eco81I CCTNAGG 2 cut(s) 251, 789
Eco88I CYCGRG 1 cut(s) 1427
EcoRI GAATTC 2 cut(s) 1203, 1529
EcoRII CCWGG 2 cut(s) 894, 1517
EcoT14I CCWWGG 4 cut(s) 690, 828, 1057, 1220
ErhI CCWWGG 4 cut(s) 690, 828, 1057, 1220
FaeI CATG 9 cut(s) 242, 518, 533, 574, 832, 950, 974, 1061, 1441
FalI AAGNNNNNCTT 6 cut(s) 1441, 1473, 1481, 1513, 1533, 1565
FaqI GGGAC 1 cut(s) 113
FatI CATG 9 cut(s) 238, 514, 529, 570, 828, 946, 970, 1057, 1437
FauI CCCGC 1 cut(s) 106
FbaI TGATCA 1 cut(s) 1249
FokI GGATG 1 cut(s) 1228
FspBI CTAG 4 cut(s) 698, 1005, 1022, 1052
GlaI GCGC 3 cut(s) 23, 25, 261
HaeIII GGCC 2 cut(s) 5, 1219
HapII CCGG 4 cut(s) 395, 452, 631, 1173
HhaI GCGC 3 cut(s) 24, 26, 262
Hin1II CATG 9 cut(s) 242, 518, 533, 574, 832, 950, 974, 1061, 1441
Hin6I GCGC 3 cut(s) 22, 24, 260
HinP1I GCGC 3 cut(s) 22, 24, 260
HincII GTYRAC 2 cut(s) 317, 825
HindII GTYRAC 2 cut(s) 317, 825
HindIII AAGCTT 2 cut(s) 29, 752
HinfI GANTC 5 cut(s) 149, 374, 802, 1475, 1584
HpaII CCGG 4 cut(s) 395, 452, 631, 1173
HphI GGTGA 2 cut(s) 73, 239
Hpy166II GTNNAC 6 cut(s) 247, 317, 619, 686, 825, 1388
Hpy188I TCNGA 8 cut(s) 91, 469, 750, 1132, 1288, 1296, 1338, 1462
Hpy188III TCNNGA 7 cut(s) 146, 865, 1052, 1427, 1429, 1438, 1588
Hpy8I GTNNAC 6 cut(s) 247, 317, 619, 686, 825, 1388
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 8 cut(s) 184, 203, 427, 547, 651, 1005, 1108, 1431
HpyCH4III ACNGT 7 cut(s) 127, 195, 604, 725, 1041, 1277, 1283
HpyCH4IV ACGT 1 cut(s) 1351
HpyF3I CTNAG 5 cut(s) 251, 789, 806, 1308, 1337
HpySE526I ACGT 1 cut(s) 1351
Hsp92II CATG 9 cut(s) 242, 518, 533, 574, 832, 950, 974, 1061, 1441
HspAI GCGC 3 cut(s) 22, 24, 260
KpnI GGTACC 1 cut(s) 347
Ksp22I TGATCA 1 cut(s) 1249
Kzo9I GATC 7 cut(s) 11, 475, 964, 1180, 1249, 1391, 1493
LmnI GCTCC 3 cut(s) 436, 845, 1014
Lsp1109I GCAGC 7 cut(s) 148, 574, 596, 782, 961, 1090, 1332
LweI GCATC 1 cut(s) 663
MaeI CTAG 4 cut(s) 698, 1005, 1022, 1052
MaeII ACGT 1 cut(s) 1351
MaeIII GTNAC 2 cut(s) 885, 1277
MalI GATC 7 cut(s) 13, 477, 966, 1182, 1251, 1393, 1495
MboI GATC 7 cut(s) 11, 475, 964, 1180, 1249, 1391, 1493
MboII GAAGA 8 cut(s) 46, 104, 393, 989, 1040, 1384, 1449, 1461
MflI RGATCY 2 cut(s) 1180, 1493
MhlI GDGCHC 1 cut(s) 850
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 143, 383, 1484, 1593
MmeI TCCRAC 1 cut(s) 1426
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 1453, 1456
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 227, 707, 983
MslI CAYNNNNRTG 2 cut(s) 107, 569
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 161, 587
MspI CCGG 4 cut(s) 395, 452, 631, 1173
MspR9I CCNGG 3 cut(s) 632, 896, 1519
Mva1269I GAATGC 1 cut(s) 1017
MvaI CCWGG 2 cut(s) 896, 1519
MvnI CGCG 5 cut(s) 10, 24, 74, 147, 262
NciI CCSGG 1 cut(s) 632
NcoI CCATGG 2 cut(s) 828, 1057
NdeII GATC 7 cut(s) 11, 475, 964, 1180, 1249, 1391, 1493
NlaIII CATG 9 cut(s) 242, 518, 533, 574, 832, 950, 974, 1061, 1441
NlaIV GGNNCC 4 cut(s) 64, 345, 1171, 1419
NmeAIII GCCGAG 1 cut(s) 1525
NmuCI GTSAC 1 cut(s) 1277
NruI TCGCGA 1 cut(s) 147
NspI RCATGY 1 cut(s) 974
PaeR7I CTCGAG 1 cut(s) 1427
PagI TCATGA 1 cut(s) 1437
PauI GCGCGC 1 cut(s) 22
PceI AGGCCT 1 cut(s) 1219
PctI GAATGC 1 cut(s) 1017
PdmI GAANNNNTTC 2 cut(s) 1453, 1456
PfeI GAWTC 1 cut(s) 802
PleI GAGTC 4 cut(s) 143, 382, 1483, 1592
PmaCI CACGTG 1 cut(s) 1352
PmlI CACGTG 1 cut(s) 1352
PpsI GAGTC 4 cut(s) 143, 382, 1483, 1592
Ppu21I YACGTR 1 cut(s) 1352
PshAI GACNNNNGTC 1 cut(s) 1059
PsiI TTATAA 1 cut(s) 1068
Psp6I CCWGG 2 cut(s) 894, 1517
PspCI CACGTG 1 cut(s) 1352
PspGI CCWGG 2 cut(s) 894, 1517
PspN4I GGNNCC 4 cut(s) 64, 345, 1171, 1419
PstI CTGCAG 1 cut(s) 586
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 2 cut(s) 1180, 1493
PteI GCGCGC 1 cut(s) 22
PvuII CAGCTG 2 cut(s) 161, 587
RruI TCGCGA 1 cut(s) 147
RsaI GTAC 3 cut(s) 345, 1313, 1602
RsaNI GTAC 3 cut(s) 344, 1312, 1601
RseI CAYNNNNRTG 2 cut(s) 107, 569
SaqAI TTAA 3 cut(s) 227, 707, 983
Sau3AI GATC 7 cut(s) 11, 475, 964, 1180, 1249, 1391, 1493
ScaI AGTACT 1 cut(s) 1313
SchI GAGTC 4 cut(s) 143, 383, 1484, 1593
ScrFI CCNGG 3 cut(s) 632, 896, 1519
SduI GDGCHC 1 cut(s) 850
SfaNI GCATC 1 cut(s) 663
SfcI CTRYAG 3 cut(s) 269, 582, 603
Sfr274I CTCGAG 1 cut(s) 1427
SlaI CTCGAG 1 cut(s) 1427
SmiMI CAYNNNNRTG 2 cut(s) 107, 569
SmlI CTYRAG 1 cut(s) 1427
SmoI CTYRAG 1 cut(s) 1427
SseBI AGGCCT 1 cut(s) 1219
SspI AATATT 1 cut(s) 462
SspMI CTAG 4 cut(s) 698, 1005, 1022, 1052
StuI AGGCCT 1 cut(s) 1219
StyD4I CCNGG 3 cut(s) 630, 894, 1517
StyI CCWWGG 4 cut(s) 690, 828, 1057, 1220
TaaI ACNGT 7 cut(s) 127, 195, 604, 725, 1041, 1277, 1283
TaiI ACGT 1 cut(s) 1354
TaqI TCGA 5 cut(s) 177, 763, 1428, 1473, 1478
TaqII GACCGA 1 cut(s) 302
TatI WGTACW 1 cut(s) 1311
TauI GCSGC 4 cut(s) 68, 71, 74, 167
TfiI GAWTC 1 cut(s) 802
Tru1I TTAA 3 cut(s) 227, 707, 983
Tru9I TTAA 3 cut(s) 227, 707, 983
TscAI CASTG 5 cut(s) 198, 223, 730, 922, 1282
TseFI GTSAC 1 cut(s) 1277
TseI GCWGC 7 cut(s) 161, 584, 587, 770, 974, 1103, 1345
Tsp45I GTSAC 1 cut(s) 1277
TspDTI ATGAA 7 cut(s) 125, 255, 423, 503, 887, 1426, 1543
TspGWI ACGGA 1 cut(s) 1234
TspRI CASTG 5 cut(s) 198, 223, 730, 922, 1282
XapI RAATTY 4 cut(s) 470, 1203, 1452, 1529
XbaI TCTAGA 1 cut(s) 1051
XceI RCATGY 1 cut(s) 974
XhoI CTCGAG 1 cut(s) 1427
XmnI GAANNNNTTC 2 cut(s) 1453, 1456
XspI CTAG 4 cut(s) 698, 1005, 1022, 1052
ZrmI AGTACT 1 cut(s) 1313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.