Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025307.1

Orthogroup ID

OG0007906

Physical Location & Seq

Genomic Coordinates Reverse (-)

181 .. 2629

Gene Structure 2449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025307.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atggaatttatcgatggagcacaagtaaatgatgtcaagaccatcaaaaaacttgggatccgacccgatgaagttgcgagattagtcagtgaaacttttgccgaaatgatgttcaaacatgggtttgtgcattgtgacccacatgccgccaacttgatagttcgtcctctaccgtctagcagaaagagcattctaggtgcctacaccatgcgcaactcatatgttcccatccatttctcatgtacaggcaagagaaaaccacaattagtacttctagaccatggtctttataaagaacttgacaatgagaccagaacaaactatgctgcactttggaagggattgatattttctgatgctgatgcaataaagaaaaatagtgcgaaattaggtgctggagaggatctgtatgcattatttgcaggaattcttactatgaggccttggaatagagtcattgacacatctattgatcacttggttatacaaggaaatgacagtgaccgttcagaacttcagatgtatgcttctcaatacttcccccaaattactgagcttctgaggaggctgccacgtgtaattctcttaatgctgaagactaacgattgtttacgatcagttagcaatgctctgttgcaggaaccttctctcgagacattcatgattgttggaaggatttcttctgaagccatcattgaggcaaaactacaaaagagatcctttttgtcttggttgagtgcctggttagacgaaatccaattagaagctcggctttttataatgcgagtagccttgtggcttctgcgactcaggaaattgtctcggcagttggcactgaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

280

Amino Acids

32.02

Weight (kDa)

9.4

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40090
fragaria_vesca	FvH4_7g24400 FvH4_7g24400 FvH4_7g24400 FvH4_7g24400 FvH4_7g24400 FvH4_7g24400
malus_domestica	MD01G1152400.v1.1 MD07G1221400.v1.1
prunus_persica	Prupe.2G249400_v2.0.a1 Prupe.2G249400_v2.0.a1
pyrus_communis	pycom01g17010
rosa_chinensis	RchiOBHm_Chr1g0370101
rosa_laevigata	RLG00000027074
rosa_multiflora	Rmu_sc0005056.1_g000004 Rmu_sc0025307.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286820 Rroxscaffold_4G00287210
rosa_rugosa	Rorug01G0354000
rosa_samantha	Rh1AG362600 Rh1BG325800 Rh1CG339100 Rh1DG356300
rosa_wichuraiana	Rw1G031910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	291, 779
Acc16I	TGCGCA	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	197
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	4 cut(s)	52, 65, 411, 711
AcsI	RAATTY	2 cut(s)	5, 426
AcuI	CTGAAG	3 cut(s)	500, 614, 705
AcvI	CACGTG	1 cut(s)	575
AfaI	GTAC	2 cut(s)	244, 270
AflIII	ACRYGT	1 cut(s)	574
AgsI	TTSAA	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	740
AluBI	AGCT	2 cut(s)	556, 767
AluI	AGCT	2 cut(s)	556, 767
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	3 cut(s)	302, 647, 825
AlwI	GGATC	4 cut(s)	52, 65, 411, 711
Ama87I	CYCGRG	1 cut(s)	650
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	2 cut(s)	326, 568
ApoI	RAATTY	2 cut(s)	5, 426
Asp700I	GAANNNNTTC	1 cut(s)	676
AspLEI	GCGC	1 cut(s)	213
AvaI	CYCGRG	1 cut(s)	650
BamHI	GGATCC	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	197
BbrPI	CACGTG	1 cut(s)	575
BbsI	GAAGAC	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	313, 555
BccI	CCATC	4 cut(s)	8, 50, 236, 698
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	1 cut(s)	742
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	3 cut(s)	302, 647, 825
BfaI	CTAG	3 cut(s)	177, 194, 275
BisI	GCNGC	3 cut(s)	147, 327, 569
BlsI	GCNGC	3 cut(s)	148, 328, 570
BmcAI	AGTACT	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	742
BmeT110I	CYCGRG	1 cut(s)	650
BmiI	GGNNCC	3 cut(s)	59, 199, 642
BmrFI	CCNGG	1 cut(s)	742
BmsI	GCATC	2 cut(s)	346, 352
BoxI	GACNNNNGTC	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	602
BpmI	CTGGAG	1 cut(s)	417
Bsa29I	ATCGAT	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	575
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	280, 443
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bse3DI	GCAATG	1 cut(s)	631
BseBI	CCWGG	1 cut(s)	742
BseCI	ATCGAT	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	280, 443
BseGI	GGATG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	631
BseMII	CTCAG	3 cut(s)	543, 551, 823
BseRI	GAGGAG	1 cut(s)	577
BseXI	GCAGC	2 cut(s)	313, 555
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	442
BshNI	GGYRCC	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	650
BsmAI	GTCTC	3 cut(s)	302, 647, 825
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	442
Bso31I	GGTCTC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	650
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp1407I	TGTACA	1 cut(s)	242
Bsp143I	GATC	5 cut(s)	57, 403, 472, 614, 716
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	3 cut(s)	544, 552, 822
BspDI	ATCGAT	1 cut(s)	12
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	3 cut(s)	59, 199, 642
BspPI	GGATC	4 cut(s)	52, 65, 411, 711
BspT107I	GGYRCC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	631
BsrGI	TGTACA	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	280, 443
BssMI	GATC	5 cut(s)	57, 403, 472, 614, 716
BssT1I	CCWWGG	2 cut(s)	280, 443
Bst2UI	CCWGG	1 cut(s)	742
Bst4CI	ACNGT	3 cut(s)	174, 500, 506
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstAUI	TGTACA	1 cut(s)	242
BstBAI	YACGTR	1 cut(s)	575
BstDEI	CTNAG	3 cut(s)	552, 560, 809
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	5 cut(s)	60, 406, 475, 617, 719
BstMAI	GTCTC	3 cut(s)	302, 647, 825
BstMBI	GATC	5 cut(s)	57, 403, 472, 614, 716
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 419
BstNI	CCWGG	1 cut(s)	742
BstNSI	RCATGY	1 cut(s)	146
BstPAI	GACNNNNGTC	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	740
BstV1I	GCAGC	2 cut(s)	313, 555
BstV2I	GAAGAC	1 cut(s)	602
BstX2I	RGATCY	3 cut(s)	57, 403, 716
BstYI	RGATCY	3 cut(s)	57, 403, 716
Bsu15I	ATCGAT	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	442
BsuTUI	ATCGAT	1 cut(s)	12
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	228
BtsIMutI	CAGTG	3 cut(s)	94, 505, 833
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	1 cut(s)	213
ClaI	ATCGAT	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	243, 269
CviAII	CATG	6 cut(s)	119, 143, 208, 240, 281, 661
CviJI	RGCY	8 cut(s)	442, 556, 568, 689, 767, 772, 791, 799
CviKI_1	RGCY	8 cut(s)	442, 556, 568, 689, 767, 772, 791, 799
CviQI	GTAC	2 cut(s)	243, 269
DdeI	CTNAG	3 cut(s)	552, 560, 809
DpnI	GATC	5 cut(s)	59, 405, 474, 616, 718
DpnII	GATC	5 cut(s)	57, 403, 472, 614, 716
Eco130I	CCWWGG	2 cut(s)	280, 443
Eco147I	AGGCCT	1 cut(s)	442
Eco31I	GGTCTC	1 cut(s)	302
Eco57I	CTGAAG	3 cut(s)	500, 614, 705
Eco72I	CACGTG	1 cut(s)	575
Eco88I	CYCGRG	1 cut(s)	650
EcoRI	GAATTC	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	740
EcoT14I	CCWWGG	2 cut(s)	280, 443
EcoT22I	ATGCAT	1 cut(s)	415
ErhI	CCWWGG	2 cut(s)	280, 443
FaeI	CATG	6 cut(s)	122, 146, 211, 243, 284, 664
FalI	AAGNNNNNCTT	6 cut(s)	664, 696, 704, 736, 756, 788
FatI	CATG	6 cut(s)	118, 142, 207, 239, 280, 660
FauNDI	CATATG	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	147, 327, 569
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	147, 327, 569
FspBI	CTAG	3 cut(s)	177, 194, 275
FspI	TGCGCA	1 cut(s)	212
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	3 cut(s)	147, 327, 569
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	442
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	6 cut(s)	122, 146, 211, 243, 284, 664
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	453, 807
Hpy166II	GTNNAC	1 cut(s)	611
Hpy188I	TCNGA	6 cut(s)	62, 355, 511, 519, 561, 685
Hpy188III	TCNNGA	6 cut(s)	37, 275, 650, 652, 661, 811
Hpy8I	GTNNAC	1 cut(s)	611
HpyAV	CCTTC	3 cut(s)	331, 654, 666
HpyCH4III	ACNGT	3 cut(s)	174, 500, 506
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	6 cut(s)	130, 329, 365, 413, 422, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 419
HpyF3I	CTNAG	3 cut(s)	552, 560, 809
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	6 cut(s)	122, 146, 211, 243, 284, 664
HspAI	GCGC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	5 cut(s)	57, 403, 472, 614, 716
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	8 cut(s)	231, 325, 381, 408, 623, 727, 754, 796
Lsp1109I	GCAGC	2 cut(s)	313, 555
LweI	GCATC	2 cut(s)	346, 352
MaeI	CTAG	3 cut(s)	177, 194, 275
MaeII	ACGT	1 cut(s)	574
MaeIII	GTNAC	2 cut(s)	134, 500
MalI	GATC	5 cut(s)	59, 405, 474, 616, 718
MboI	GATC	5 cut(s)	57, 403, 472, 614, 716
MboII	GAAGA	2 cut(s)	607, 672
MflI	RGATCY	3 cut(s)	57, 403, 716
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	8 cut(s)	5, 263, 386, 426, 546, 579, 758, 815
MlyI	GAGTC	2 cut(s)	462, 801
MmeI	TCCRAC	2 cut(s)	85, 649
MnlI	CCTC	6 cut(s)	177, 394, 432, 555, 558, 691
Mph1103I	ATGCAT	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	676
MseI	TTAA	1 cut(s)	587
MspR9I	CCNGG	1 cut(s)	742
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	742
MwoI	GCNNNNNNNGC	2 cut(s)	186, 419
NcoI	CCATGG	1 cut(s)	280
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	5 cut(s)	57, 403, 472, 614, 716
NlaIII	CATG	6 cut(s)	122, 146, 211, 243, 284, 664
NlaIV	GGNNCC	3 cut(s)	59, 199, 642
NmeAIII	GCCGAG	2 cut(s)	748, 802
NmuCI	GTSAC	2 cut(s)	134, 500
NsbI	TGCGCA	1 cut(s)	212
NsiI	ATGCAT	1 cut(s)	415
NspI	RCATGY	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	650
PagI	TCATGA	1 cut(s)	660
PceI	AGGCCT	1 cut(s)	442
PctI	GAATGC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	676
PkrI	GCNGC	3 cut(s)	148, 328, 570
PleI	GAGTC	2 cut(s)	461, 801
PmaCI	CACGTG	1 cut(s)	575
PmlI	CACGTG	1 cut(s)	575
PpsI	GAGTC	2 cut(s)	461, 801
Ppu21I	YACGTR	1 cut(s)	575
PshAI	GACNNNNGTC	1 cut(s)	282
PsiI	TTATAA	2 cut(s)	291, 779
Psp6I	CCWGG	1 cut(s)	740
PspCI	CACGTG	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	740
PspN4I	GGNNCC	3 cut(s)	59, 199, 642
PsuI	RGATCY	3 cut(s)	57, 403, 716
RsaI	GTAC	2 cut(s)	244, 270
RsaNI	GTAC	2 cut(s)	243, 269
SaqAI	TTAA	1 cut(s)	587
SatI	GCNGC	3 cut(s)	147, 327, 569
Sau3AI	GATC	5 cut(s)	57, 403, 472, 614, 716
ScaI	AGTACT	1 cut(s)	270
SchI	GAGTC	2 cut(s)	462, 801
ScrFI	CCNGG	1 cut(s)	742
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	6 cut(s)	199, 394, 558, 577, 646, 769
SfaNI	GCATC	2 cut(s)	346, 352
Sfr274I	CTCGAG	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	650
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	8 cut(s)	5, 263, 386, 426, 546, 579, 758, 815
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	3 cut(s)	177, 194, 275
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	1 cut(s)	740
StyI	CCWWGG	2 cut(s)	280, 443
TaaI	ACNGT	3 cut(s)	174, 500, 506
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	2 cut(s)	12, 651
TasI	AATT	8 cut(s)	5, 263, 386, 426, 546, 579, 758, 815
TatI	WGTACW	2 cut(s)	242, 268
TauI	GCSGC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	587
Tru9I	TTAA	1 cut(s)	587
TscAI	CASTG	3 cut(s)	94, 505, 840
TseFI	GTSAC	2 cut(s)	134, 500
TseI	GCWGC	2 cut(s)	326, 568
Tsp45I	GTSAC	2 cut(s)	134, 500
TspDTI	ATGAA	2 cut(s)	84, 649
TspRI	CASTG	3 cut(s)	94, 505, 840
XapI	RAATTY	2 cut(s)	5, 426
XbaI	TCTAGA	1 cut(s)	274
XceI	RCATGY	1 cut(s)	146
XhoI	CTCGAG	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	676
XspI	CTAG	3 cut(s)	177, 194, 275
ZrmI	AGTACT	1 cut(s)	270
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.