Rh1AG362600

ABC1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0007906
Physical Location & Seq
Forward (+)
59737261 .. 59742380
5120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG362600.1

Sequence Viewer

Length: 1416 bp
ATGGCCACGCGATCCTTATGGCGCGCAAAGCTTGCTCTGTCGGCAACCGCCCTCTTCGGCGGAGCCGCGGCGGCGACTATCACCACCTCCGAAGACCCCGCCATGACTATGAAGCTCTACTCCACCGTCCCCGTCCGCCTCCTTCGCGACTCCATCACAGCCGCCGCCATCGCCTTCGATTATGAGTATTCACTGTGGGGATTGCCTGAAGGAAGCAGTGAGAGGTTAAGGGCCAAACATGAAGTTCACCTCAGGTCTGCACGTAAACTACAAGATTTGTGTTTTAAAAATGGAGGAATATATATCAAGCTCGGTCAACATATTGGACAACTGGAATACTTGGTACCAGAAGAGTATGTCCGGACAATGAGAGAGTCTATGTTGAATAAATGTCCAGTTTCTTCCTATGAACAAGTGTGCGAAGTCATCGAGAAAGAGCTTGGAGATAAGCCGGATAAAATATTTTCTGAATTTGATCCTGTTCCAATAGCAAGTGCTTCTCTTGCACAGGTCCATGTTGCTCGCACACATAATGGCCAAAAAGTTGCTGTGAAGGTTCAGCACACTCACATGACAGATACTGCAGCTGCAGATTGTGCTACTGTAGATGTGATTGTGAACACCCTGCACCGGGTTTTCCCTTCTTTTGATTATAGGTGGTTGATTGTGGAAATGCGTGAAAGTTTACCCAAGGAACTAGATTTCTTAAACGAAGCCAAGAACAGTGAGAAATGCCTGCATAATTTTCTGAAGCTTTCTCCTCGAATTGCAGCTTATGTATATGCACCAAAGGTGCATTGGAATCTAAGCACCTCAAAGTTGTTGACCATGGAATTTATCGATGGAGCACAAGTAAATGATGTCAAGACCATCAAAAAACTTGGGATCCGACCCGATGAAGTTGCGAGATTAGTCAGTGAAACTTTTGCCGAAATGATGTTCAAACATGGGTTTGTGCATTGTGACCCACATGCCGCCAACTTGATAGTTCGTCCTCTACCGTCTAGCAGAAAGAGCATTCTAGGCAAGAGAAAACCACAACTGGTACTTCTAGACCATGGCCTTTATAAAGAACTTGACAATGAGACCAGAACAAACTATGCTGCACTTTGGAAGGGATTGATATTTTCTGATGCCGATGCAATAAAGAAAAATAGTGCGAAATTAGGTGCTGGAGAGGATCTGTATGCATTATTTGCAGGAATTCTTACTATGAGGCCTTGGAATAGAGTCATTGACACATCTATTGATCACTTGGTTATACAAGGAAATGACAGTGACCGTTCAGAACTTCAGATGTATGCTTCTCAGTACTTCCCCCAAATTACTGAGCTTCTGAGGAGGCTGCCACGTGTAATTCTCTTAATGCTGAAGACTAACGATTGTTTACGATCAGTTAGCAATGCTCTGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

471

Amino Acids

53.03

Weight (kDa)

8.64

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 127 - 385 2.8e-82 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1068
Acc65I GGTACC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 343
AccII CGCG 4 cut(s) 10, 24, 68, 147
AccIII TCCGGA 1 cut(s) 360
AclWI GGATC 5 cut(s) 6, 470, 880, 893, 1188
AcoI YGGCCR 2 cut(s) 3, 535
AcsI RAATTY 3 cut(s) 470, 833, 1203
AcuI CTGAAG 4 cut(s) 228, 770, 1277, 1391
AcvI CACGTG 1 cut(s) 1352
AfaI GTAC 3 cut(s) 345, 1047, 1313
AfiI CCNNNNNNNGG 2 cut(s) 630, 631
AflIII ACRYGT 1 cut(s) 1351
AgsI TTSAA 2 cut(s) 385, 943
AluBI AGCT 8 cut(s) 31, 115, 310, 439, 587, 754, 773, 1333
AluI AGCT 8 cut(s) 31, 115, 310, 439, 587, 754, 773, 1333
Alw21I GWGCWC 1 cut(s) 850
Alw26I GTCTC 1 cut(s) 1079
AlwI GGATC 5 cut(s) 6, 470, 880, 893, 1188
AlwNI CAGNNNCTG 1 cut(s) 581
Aor13HI TCCGGA 1 cut(s) 360
AoxI GGCC 5 cut(s) 3, 231, 535, 1060, 1217
ApeKI GCWGC 5 cut(s) 584, 587, 770, 1103, 1345
ApoI RAATTY 3 cut(s) 470, 833, 1203
Asp718I GGTACC 1 cut(s) 343
AspLEI GCGC 2 cut(s) 24, 26
AspS9I GGNCC 2 cut(s) 231, 511
AsuC2I CCSGG 1 cut(s) 632
AsuHPI GGTGA 2 cut(s) 73, 239
AvaII GGWCC 1 cut(s) 511
AxyI CCTNAGG 1 cut(s) 251
BalI TGGCCA 2 cut(s) 5, 537
BamHI GGATCC 1 cut(s) 885
BanI GGYRCC 1 cut(s) 343
BbrPI CACGTG 1 cut(s) 1352
BbsI GAAGAC 2 cut(s) 99, 1379
Bbv12I GWGCWC 1 cut(s) 850
BbvI GCAGC 5 cut(s) 574, 596, 782, 1090, 1332
BccI CCATC 4 cut(s) 161, 176, 836, 878
BcgI CGANNNNNNTGC 2 cut(s) 884, 918
BclI TGATCA 1 cut(s) 1249
BcnI CCSGG 1 cut(s) 632
BcoDI GTCTC 1 cut(s) 1079
BfaI CTAG 4 cut(s) 698, 1005, 1022, 1052
BfmI CTRYAG 3 cut(s) 582, 588, 603
BglI GCCNNNNNGGC 1 cut(s) 71
BmcAI AGTACT 1 cut(s) 1313
Bme1390I CCNGG 1 cut(s) 632
Bme18I GGWCC 1 cut(s) 511
BmgT120I GGNCC 2 cut(s) 231, 511
BmiI GGNNCC 3 cut(s) 64, 345, 887
BmrFI CCNGG 1 cut(s) 632
BmsI GCATC 2 cut(s) 1123, 1129
BpiI GAAGAC 2 cut(s) 99, 1379
BpmI CTGGAG 1 cut(s) 1194
BpuMI CCSGG 1 cut(s) 632
Bsa29I ATCGAT 1 cut(s) 840
BsaAI YACGTR 2 cut(s) 263, 1352
BsaI GGTCTC 1 cut(s) 1079
BsaJI CCNNGG 5 cut(s) 66, 690, 828, 1057, 1220
BsaWI WCCGGW 1 cut(s) 360
BsaXI ACNNNNNCTCC 2 cut(s) 837, 867
Bsc4I CCNNNNNNNGG 2 cut(s) 630, 631
Bse1I ACTGG 3 cut(s) 336, 395, 1047
Bse21I CCTNAGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 1408
BseAI TCCGGA 1 cut(s) 360
BseCI ATCGAT 1 cut(s) 840
BseDI CCNNGG 5 cut(s) 66, 690, 828, 1057, 1220
BseLI CCNNNNNNNGG 2 cut(s) 630, 631
BseMI GCAATG 1 cut(s) 1408
BseMII CTCAG 4 cut(s) 265, 1320, 1322, 1328
BseNI ACTGG 3 cut(s) 336, 395, 1047
BsePI GCGCGC 1 cut(s) 22
BseRI GAGGAG 2 cut(s) 750, 1354
BseXI GCAGC 5 cut(s) 574, 596, 782, 1090, 1332
BsgI GTGCAG 3 cut(s) 243, 611, 1089
Bsh1236I CGCG 4 cut(s) 10, 24, 68, 147
BshFI GGCC 5 cut(s) 5, 233, 537, 1062, 1219
BshNI GGYRCC 1 cut(s) 343
BshVI ATCGAT 1 cut(s) 840
BsiHKAI GWGCWC 1 cut(s) 850
BsiSI CCGG 3 cut(s) 361, 452, 631
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 630, 631
BsmAI GTCTC 1 cut(s) 1079
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 1017
BsnI GGCC 5 cut(s) 5, 233, 537, 1062, 1219
Bso31I GGTCTC 1 cut(s) 1079
Bsp1286I GDGCHC 1 cut(s) 850
Bsp13I TCCGGA 1 cut(s) 360
Bsp143I GATC 6 cut(s) 11, 475, 885, 1180, 1249, 1391
Bsp19I CCATGG 2 cut(s) 828, 1057
Bsp68I TCGCGA 1 cut(s) 147
BspANI GGCC 5 cut(s) 5, 233, 537, 1062, 1219
BspCNI CTCAG 4 cut(s) 264, 1321, 1321, 1329
BspDI ATCGAT 1 cut(s) 840
BspEI TCCGGA 1 cut(s) 360
BspFNI CGCG 4 cut(s) 10, 24, 68, 147
BspLI GGNNCC 3 cut(s) 64, 345, 887
BspMAI CTGCAG 2 cut(s) 586, 592
BspPI GGATC 5 cut(s) 6, 470, 880, 893, 1188
BspT107I GGYRCC 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 1079
BsrDI GCAATG 1 cut(s) 1408
BsrI ACTGG 3 cut(s) 336, 395, 1047
BssECI CCNNGG 5 cut(s) 66, 690, 828, 1057, 1220
BssHII GCGCGC 1 cut(s) 22
BssMI GATC 6 cut(s) 11, 475, 885, 1180, 1249, 1391
BssT1I CCWWGG 4 cut(s) 690, 828, 1057, 1220
Bst4CI ACNGT 7 cut(s) 127, 195, 604, 725, 1002, 1277, 1283
Bst6I CTCTTC 2 cut(s) 59, 345
BstAPI GCANNNNNTGC 3 cut(s) 32, 596, 1196
BstBAI YACGTR 2 cut(s) 263, 1352
BstC8I GCNNGC 4 cut(s) 24, 33, 523, 737
BstDEI CTNAG 5 cut(s) 251, 806, 1308, 1329, 1337
BstDSI CCRYGG 3 cut(s) 66, 828, 1057
BstFNI CGCG 4 cut(s) 10, 24, 68, 147
BstHHI GCGC 2 cut(s) 24, 26
BstKTI GATC 6 cut(s) 14, 478, 888, 1183, 1252, 1394
BstMAI GTCTC 1 cut(s) 1079
BstMBI GATC 6 cut(s) 11, 475, 885, 1180, 1249, 1391
BstNSI RCATGY 1 cut(s) 974
BstSCI CCNGG 1 cut(s) 630
BstSFI CTRYAG 3 cut(s) 582, 588, 603
BstUI CGCG 4 cut(s) 10, 24, 68, 147
BstV1I GCAGC 5 cut(s) 574, 596, 782, 1090, 1332
BstV2I GAAGAC 2 cut(s) 99, 1379
BstX2I RGATCY 2 cut(s) 885, 1180
BstYI RGATCY 2 cut(s) 885, 1180
Bsu15I ATCGAT 1 cut(s) 840
Bsu36I CCTNAGG 1 cut(s) 251
BsuRI GGCC 5 cut(s) 5, 233, 537, 1062, 1219
BsuTUI ATCGAT 1 cut(s) 840
BtgI CCRYGG 3 cut(s) 66, 828, 1057
BtgZI GCGATG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 5 cut(s) 191, 223, 730, 922, 1282
BtuMI TCGCGA 1 cut(s) 147
Cac8I GCNNGC 4 cut(s) 24, 33, 523, 737
CaiI CAGNNNCTG 1 cut(s) 581
CfoI GCGC 2 cut(s) 24, 26
Cfr13I GGNCC 2 cut(s) 231, 511
Cfr42I CCGCGG 1 cut(s) 69
ClaI ATCGAT 1 cut(s) 840
Csp6I GTAC 3 cut(s) 344, 1046, 1312
CviAII CATG 8 cut(s) 103, 239, 515, 571, 829, 947, 971, 1058
CviQI GTAC 3 cut(s) 344, 1046, 1312
DdeI CTNAG 5 cut(s) 251, 806, 1308, 1329, 1337
DpnI GATC 6 cut(s) 13, 477, 887, 1182, 1251, 1393
DpnII GATC 6 cut(s) 11, 475, 885, 1180, 1249, 1391
DraI TTTAAA 1 cut(s) 286
EaeI YGGCCR 2 cut(s) 3, 535
Eam1104I CTCTTC 2 cut(s) 59, 345
EarI CTCTTC 2 cut(s) 59, 345
EciI GGCGGA 2 cut(s) 75, 125
Eco130I CCWWGG 4 cut(s) 690, 828, 1057, 1220
Eco147I AGGCCT 1 cut(s) 1219
Eco31I GGTCTC 1 cut(s) 1079
Eco47I GGWCC 1 cut(s) 511
Eco57I CTGAAG 4 cut(s) 228, 770, 1277, 1391
Eco72I CACGTG 1 cut(s) 1352
Eco81I CCTNAGG 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 1203
EcoT14I CCWWGG 4 cut(s) 690, 828, 1057, 1220
EcoT22I ATGCAT 1 cut(s) 1192
ErhI CCWWGG 4 cut(s) 690, 828, 1057, 1220
FaeI CATG 8 cut(s) 106, 242, 518, 574, 832, 950, 974, 1061
FaqI GGGAC 1 cut(s) 113
FatI CATG 8 cut(s) 102, 238, 514, 570, 828, 946, 970, 1057
FauI CCCGC 1 cut(s) 106
FbaI TGATCA 1 cut(s) 1249
FspBI CTAG 4 cut(s) 698, 1005, 1022, 1052
GlaI GCGC 2 cut(s) 23, 25
GsuI CTGGAG 1 cut(s) 1194
HaeIII GGCC 5 cut(s) 5, 233, 537, 1062, 1219
HapII CCGG 3 cut(s) 361, 452, 631
HhaI GCGC 2 cut(s) 24, 26
Hin1II CATG 8 cut(s) 106, 242, 518, 574, 832, 950, 974, 1061
Hin6I GCGC 2 cut(s) 22, 24
HinP1I GCGC 2 cut(s) 22, 24
HincII GTYRAC 2 cut(s) 317, 825
HindII GTYRAC 2 cut(s) 317, 825
HindIII AAGCTT 2 cut(s) 29, 752
HinfI GANTC 4 cut(s) 149, 374, 802, 1230
HpaII CCGG 3 cut(s) 361, 452, 631
HphI GGTGA 2 cut(s) 73, 239
Hpy166II GTNNAC 7 cut(s) 247, 266, 317, 619, 686, 825, 1388
Hpy188I TCNGA 8 cut(s) 91, 469, 750, 890, 1132, 1288, 1296, 1338
Hpy188III TCNNGA 5 cut(s) 146, 361, 430, 865, 1052
Hpy8I GTNNAC 7 cut(s) 247, 266, 317, 619, 686, 825, 1388
HpyAV CCTTC 6 cut(s) 152, 184, 203, 547, 651, 1108
HpyCH4III ACNGT 7 cut(s) 127, 195, 604, 725, 1002, 1277, 1283
HpyCH4IV ACGT 2 cut(s) 262, 1351
HpyF3I CTNAG 5 cut(s) 251, 806, 1308, 1329, 1337
HpySE526I ACGT 2 cut(s) 262, 1351
Hsp92II CATG 8 cut(s) 106, 242, 518, 574, 832, 950, 974, 1061
HspAI GCGC 2 cut(s) 22, 24
Kpn2I TCCGGA 1 cut(s) 360
KpnI GGTACC 1 cut(s) 347
Ksp22I TGATCA 1 cut(s) 1249
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 6 cut(s) 11, 475, 885, 1180, 1249, 1391
LmnI GCTCC 2 cut(s) 62, 845
Lsp1109I GCAGC 5 cut(s) 574, 596, 782, 1090, 1332
LweI GCATC 2 cut(s) 1123, 1129
MaeI CTAG 4 cut(s) 698, 1005, 1022, 1052
MaeII ACGT 2 cut(s) 262, 1351
MaeIII GTNAC 2 cut(s) 962, 1277
MalI GATC 6 cut(s) 13, 477, 887, 1182, 1251, 1393
MboI GATC 6 cut(s) 11, 475, 885, 1180, 1249, 1391
MboII GAAGA 5 cut(s) 46, 104, 362, 393, 1384
MflI RGATCY 2 cut(s) 885, 1180
MhlI GDGCHC 1 cut(s) 850
MlsI TGGCCA 2 cut(s) 5, 537
MluCI AATT 8 cut(s) 470, 742, 765, 833, 1163, 1203, 1323, 1356
MluNI TGGCCA 2 cut(s) 5, 537
MlyI GAGTC 3 cut(s) 143, 383, 1239
MmeI TCCRAC 1 cut(s) 913
Mox20I TGGCCA 2 cut(s) 5, 537
Mph1103I ATGCAT 1 cut(s) 1192
MroI TCCGGA 1 cut(s) 360
MscI TGGCCA 2 cut(s) 5, 537
MseI TTAA 4 cut(s) 227, 285, 707, 1364
MslI CAYNNNNRTG 2 cut(s) 107, 569
Msp20I TGGCCA 2 cut(s) 5, 537
MspA1I CMGCKG 2 cut(s) 68, 587
MspI CCGG 3 cut(s) 361, 452, 631
MspR9I CCNGG 1 cut(s) 632
Mva1269I GAATGC 1 cut(s) 1017
MvnI CGCG 4 cut(s) 10, 24, 68, 147
NciI CCSGG 1 cut(s) 632
NcoI CCATGG 2 cut(s) 828, 1057
NdeII GATC 6 cut(s) 11, 475, 885, 1180, 1249, 1391
NlaIII CATG 8 cut(s) 106, 242, 518, 574, 832, 950, 974, 1061
NlaIV GGNNCC 3 cut(s) 64, 345, 887
NmuCI GTSAC 2 cut(s) 962, 1277
NruI TCGCGA 1 cut(s) 147
NsiI ATGCAT 1 cut(s) 1192
NspI RCATGY 1 cut(s) 974
PauI GCGCGC 1 cut(s) 22
PceI AGGCCT 1 cut(s) 1219
PctI GAATGC 1 cut(s) 1017
PfeI GAWTC 1 cut(s) 802
PleI GAGTC 3 cut(s) 143, 382, 1238
PmaCI CACGTG 1 cut(s) 1352
PmlI CACGTG 1 cut(s) 1352
PpsI GAGTC 3 cut(s) 143, 382, 1238
Ppu21I YACGTR 2 cut(s) 263, 1352
PsiI TTATAA 1 cut(s) 1068
PspCI CACGTG 1 cut(s) 1352
PspN4I GGNNCC 3 cut(s) 64, 345, 887
PspPI GGNCC 2 cut(s) 231, 511
PstI CTGCAG 2 cut(s) 586, 592
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 2 cut(s) 885, 1180
PteI GCGCGC 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 587
RruI TCGCGA 1 cut(s) 147
RsaI GTAC 3 cut(s) 345, 1047, 1313
RsaNI GTAC 3 cut(s) 344, 1046, 1312
RseI CAYNNNNRTG 2 cut(s) 107, 569
SacII CCGCGG 1 cut(s) 69
SaqAI TTAA 4 cut(s) 227, 285, 707, 1364
Sau3AI GATC 6 cut(s) 11, 475, 885, 1180, 1249, 1391
Sau96I GGNCC 2 cut(s) 231, 511
ScaI AGTACT 1 cut(s) 1313
SchI GAGTC 3 cut(s) 143, 383, 1239
ScrFI CCNGG 1 cut(s) 632
SduI GDGCHC 1 cut(s) 850
SfaNI GCATC 2 cut(s) 1123, 1129
SfcI CTRYAG 3 cut(s) 582, 588, 603
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SinI GGWCC 1 cut(s) 511
SmiMI CAYNNNNRTG 2 cut(s) 107, 569
Sse9I AATT 8 cut(s) 470, 742, 765, 833, 1163, 1203, 1323, 1356
SseBI AGGCCT 1 cut(s) 1219
SspI AATATT 1 cut(s) 462
SspMI CTAG 4 cut(s) 698, 1005, 1022, 1052
StuI AGGCCT 1 cut(s) 1219
StyD4I CCNGG 1 cut(s) 630
StyI CCWWGG 4 cut(s) 690, 828, 1057, 1220
TaaI ACNGT 7 cut(s) 127, 195, 604, 725, 1002, 1277, 1283
TaiI ACGT 2 cut(s) 265, 1354
TaqI TCGA 4 cut(s) 177, 429, 763, 840
TaqII GACCGA 1 cut(s) 302
TasI AATT 8 cut(s) 470, 742, 765, 833, 1163, 1203, 1323, 1356
TatI WGTACW 1 cut(s) 1311
TauI GCSGC 6 cut(s) 68, 71, 74, 164, 167, 977
TfiI GAWTC 1 cut(s) 802
Tru1I TTAA 4 cut(s) 227, 285, 707, 1364
Tru9I TTAA 4 cut(s) 227, 285, 707, 1364
TscAI CASTG 5 cut(s) 198, 223, 730, 922, 1282
TseFI GTSAC 2 cut(s) 962, 1277
TseI GCWGC 5 cut(s) 584, 587, 770, 1103, 1345
Tsp45I GTSAC 2 cut(s) 962, 1277
TspDTI ATGAA 4 cut(s) 125, 255, 423, 912
TspRI CASTG 5 cut(s) 198, 223, 730, 922, 1282
VpaK11BI GGWCC 1 cut(s) 511
XapI RAATTY 3 cut(s) 470, 833, 1203
XbaI TCTAGA 1 cut(s) 1051
XceI RCATGY 1 cut(s) 974
XcmI CCANNNNNNNNNTGG 1 cut(s) 795
XspI CTAG 4 cut(s) 698, 1005, 1022, 1052
ZrmI AGTACT 1 cut(s) 1313
Zsp2I ATGCAT 1 cut(s) 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.