Rmu_sc0005056.1_g000004

ABC1 protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005056.1
Physical Location & Seq
Reverse (-)
13136 .. 16780
3645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005056.1_g000004.1.cds

Sequence Viewer

Length: 1419 bp
atggccacgcgatccttatggcgcgctaagcttgctgtgtcggcaaccgccctcttcggcggagccgcggcggcgactatcaccacctccgaagaccccgccatgactatgaagctctactccaccgtccccgtccgcctccttcgcgactccaccacagccgccgccatcgccttcgattatgagtattcactgtggggattgcctgaaggaagcagtgagaggttaaaggctaaacatgaagttcacctcaggtctgcacgtaaactacaagaattatgttttaaaaatggaggaatatatatcaagcttggtcaacatataggacaactggaatacttggtaccagaagagtatgtccggacaatgagagagtctatgttgaataaatgtccagtttcttcctatgaacaagtgtgcgaagtcatcgagaaagagcttggagataagccggataaaattttttctgaatttgatcctgttccaatagcaagtgcttctcttgcacaagtccatgttgctcgcacacataatggccaaaaagttgctgtgaagaaacttcaaaacatgcatgcttcttataagagactaagagtttctttactaagcacctcaaagttgttgaccatggaatttatcgatggagcacaagtaaatgatgtcaagaccatcaaaaaacttgggatccgacccgatgaagttgcgagattagtcagtgaaacttttgccgaaatgatgttcaaacatgggtttgtgcattgtgacccacatgccgccaacttgatagttcgtcctctaccgtctagcagaaagagcattctaggcaagagaaaaccacaattagtacttctagaccatggtctttataaagaacttgacaatgagaccagaacaaactatgctgcactttggaagggattgatattttctgatgctgatgcaataaagaaaaatagtgcgaaattaggtgctggagaggatctgtatgcattatttgcaggaattcttactatgaggccttggaatagagtcattgacacatctattgatcacttggttatacaaggaaatgacagtgaccgttcagaacttcagatgtatgcttctcaatacttcccccaaattactgagcttctgaggaggctgccacgtgtaattctcttaatgctgaagactaacgattgtttacgatcagttagcaatgctctgttgcaggaaccttctctcgagacattcatgattgttggaaggatttcttctgaagccatcattgaggcaaaactacaaaagagatcctttttgtcttggttgagtgcctggttagacgaaatccaattagaagctcggctttttataatgcgagtagccttgtggcttctgcgactcaggaaattgtctcggcagttggcactgaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

472

Amino Acids

53.32

Weight (kDa)

9.41

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 582, 867, 1355
Acc65I GGTACC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 343
AccII CGCG 4 cut(s) 10, 24, 68, 147
AccIII TCCGGA 1 cut(s) 360
AclWI GGATC 6 cut(s) 6, 470, 679, 692, 987, 1287
AcoI YGGCCR 2 cut(s) 3, 535
AcsI RAATTY 4 cut(s) 459, 470, 632, 1002
AcuI CTGAAG 4 cut(s) 228, 1076, 1190, 1281
AcvI CACGTG 1 cut(s) 1151
AfaI GTAC 2 cut(s) 345, 846
AflIII ACRYGT 1 cut(s) 1150
AgsI TTSAA 3 cut(s) 385, 563, 742
AjnI CCWGG 1 cut(s) 1316
AluBI AGCT 6 cut(s) 31, 115, 310, 439, 1132, 1343
AluI AGCT 6 cut(s) 31, 115, 310, 439, 1132, 1343
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 4 cut(s) 580, 878, 1223, 1401
AlwI GGATC 6 cut(s) 6, 470, 679, 692, 987, 1287
Ama87I CYCGRG 1 cut(s) 1226
Aor13HI TCCGGA 1 cut(s) 360
AoxI GGCC 3 cut(s) 3, 535, 1016
ApeKI GCWGC 2 cut(s) 902, 1144
ApoI RAATTY 4 cut(s) 459, 470, 632, 1002
Asp700I GAANNNNTTC 1 cut(s) 1252
Asp718I GGTACC 1 cut(s) 343
AspLEI GCGC 2 cut(s) 24, 26
AsuHPI GGTGA 2 cut(s) 73, 239
AvaI CYCGRG 1 cut(s) 1226
AxyI CCTNAGG 1 cut(s) 251
BalI TGGCCA 2 cut(s) 5, 537
BamHI GGATCC 1 cut(s) 684
BanI GGYRCC 1 cut(s) 343
BbrPI CACGTG 1 cut(s) 1151
BbsI GAAGAC 2 cut(s) 99, 1178
Bbv12I GWGCWC 1 cut(s) 649
BbvI GCAGC 2 cut(s) 889, 1131
BccI CCATC 4 cut(s) 176, 635, 677, 1274
BcgI CGANNNNNNTGC 2 cut(s) 683, 717
BciT130I CCWGG 1 cut(s) 1318
BclI TGATCA 1 cut(s) 1048
BcoDI GTCTC 4 cut(s) 580, 878, 1223, 1401
BfaI CTAG 3 cut(s) 804, 821, 851
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 8 cut(s) 66, 69, 72, 162, 165, 774, 903, 1145
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 8 cut(s) 67, 70, 73, 163, 166, 775, 904, 1146
BmcAI AGTACT 1 cut(s) 846
Bme1390I CCNGG 1 cut(s) 1318
BmeT110I CYCGRG 1 cut(s) 1226
BmiI GGNNCC 4 cut(s) 64, 345, 686, 1218
BmrFI CCNGG 1 cut(s) 1318
BmsI GCATC 2 cut(s) 922, 928
BoxI GACNNNNGTC 1 cut(s) 858
BpiI GAAGAC 2 cut(s) 99, 1178
BpmI CTGGAG 1 cut(s) 993
Bpu1102I GCTNAGC 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 639
BsaAI YACGTR 2 cut(s) 263, 1151
BsaI GGTCTC 1 cut(s) 878
BsaJI CCNNGG 4 cut(s) 66, 627, 856, 1019
BsaWI WCCGGW 1 cut(s) 360
BsaXI ACNNNNNCTCC 2 cut(s) 636, 666
Bse1I ACTGG 2 cut(s) 336, 395
Bse21I CCTNAGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 1207
BseAI TCCGGA 1 cut(s) 360
BseBI CCWGG 1 cut(s) 1318
BseCI ATCGAT 1 cut(s) 639
BseDI CCNNGG 4 cut(s) 66, 627, 856, 1019
BseMI GCAATG 1 cut(s) 1207
BseMII CTCAG 4 cut(s) 265, 1119, 1127, 1399
BseNI ACTGG 2 cut(s) 336, 395
BsePI GCGCGC 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 1153
BseXI GCAGC 2 cut(s) 889, 1131
BsgI GTGCAG 2 cut(s) 243, 888
Bsh1236I CGCG 4 cut(s) 10, 24, 68, 147
BshFI GGCC 3 cut(s) 5, 537, 1018
BshNI GGYRCC 1 cut(s) 343
BshVI ATCGAT 1 cut(s) 639
BsiHKAI GWGCWC 1 cut(s) 649
BsiHKCI CYCGRG 1 cut(s) 1226
BsiSI CCGG 2 cut(s) 361, 452
BslFI GGGAC 1 cut(s) 113
BsmAI GTCTC 4 cut(s) 580, 878, 1223, 1401
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 816
BsnI GGCC 3 cut(s) 5, 537, 1018
Bso31I GGTCTC 1 cut(s) 878
BsoBI CYCGRG 1 cut(s) 1226
Bsp1286I GDGCHC 1 cut(s) 649
Bsp13I TCCGGA 1 cut(s) 360
Bsp143I GATC 7 cut(s) 11, 475, 684, 979, 1048, 1190, 1292
Bsp1720I GCTNAGC 1 cut(s) 27
Bsp19I CCATGG 2 cut(s) 627, 856
Bsp68I TCGCGA 1 cut(s) 147
BspANI GGCC 3 cut(s) 5, 537, 1018
BspCNI CTCAG 4 cut(s) 264, 1120, 1128, 1398
BspDI ATCGAT 1 cut(s) 639
BspEI TCCGGA 1 cut(s) 360
BspFNI CGCG 4 cut(s) 10, 24, 68, 147
BspHI TCATGA 1 cut(s) 1236
BspLI GGNNCC 4 cut(s) 64, 345, 686, 1218
BspPI GGATC 6 cut(s) 6, 470, 679, 692, 987, 1287
BspT107I GGYRCC 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 878
BsrDI GCAATG 1 cut(s) 1207
BsrI ACTGG 2 cut(s) 336, 395
BssECI CCNNGG 4 cut(s) 66, 627, 856, 1019
BssHII GCGCGC 1 cut(s) 22
BssMI GATC 7 cut(s) 11, 475, 684, 979, 1048, 1190, 1292
BssT1I CCWWGG 3 cut(s) 627, 856, 1019
Bst2UI CCWGG 1 cut(s) 1318
Bst4CI ACNGT 5 cut(s) 127, 195, 801, 1076, 1082
Bst6I CTCTTC 2 cut(s) 59, 345
BstAPI GCANNNNNTGC 1 cut(s) 995
BstBAI YACGTR 2 cut(s) 263, 1151
BstC8I GCNNGC 4 cut(s) 24, 33, 523, 573
BstDEI CTNAG 7 cut(s) 27, 251, 590, 605, 1128, 1136, 1385
BstDSI CCRYGG 3 cut(s) 66, 627, 856
BstFNI CGCG 4 cut(s) 10, 24, 68, 147
BstHHI GCGC 2 cut(s) 24, 26
BstKTI GATC 7 cut(s) 14, 478, 687, 982, 1051, 1193, 1295
BstMAI GTCTC 4 cut(s) 580, 878, 1223, 1401
BstMBI GATC 7 cut(s) 11, 475, 684, 979, 1048, 1190, 1292
BstNI CCWGG 1 cut(s) 1318
BstNSI RCATGY 3 cut(s) 571, 575, 773
BstPAI GACNNNNGTC 1 cut(s) 858
BstSCI CCNGG 1 cut(s) 1316
BstUI CGCG 4 cut(s) 10, 24, 68, 147
BstV1I GCAGC 2 cut(s) 889, 1131
BstV2I GAAGAC 2 cut(s) 99, 1178
BstX2I RGATCY 3 cut(s) 684, 979, 1292
BstYI RGATCY 3 cut(s) 684, 979, 1292
Bsu15I ATCGAT 1 cut(s) 639
Bsu36I CCTNAGG 1 cut(s) 251
BsuRI GGCC 3 cut(s) 5, 537, 1018
BsuTUI ATCGAT 1 cut(s) 639
BtgI CCRYGG 3 cut(s) 66, 627, 856
BtgZI GCGATG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 5 cut(s) 191, 223, 721, 1081, 1409
BtuMI TCGCGA 1 cut(s) 147
Cac8I GCNNGC 4 cut(s) 24, 33, 523, 573
CciI TCATGA 1 cut(s) 1236
CfoI GCGC 2 cut(s) 24, 26
Cfr42I CCGCGG 1 cut(s) 69
ClaI ATCGAT 1 cut(s) 639
Csp6I GTAC 2 cut(s) 344, 845
CviQI GTAC 2 cut(s) 344, 845
DdeI CTNAG 7 cut(s) 27, 251, 590, 605, 1128, 1136, 1385
DpnI GATC 7 cut(s) 13, 477, 686, 981, 1050, 1192, 1294
DpnII GATC 7 cut(s) 11, 475, 684, 979, 1048, 1190, 1292
DraI TTTAAA 1 cut(s) 286
EaeI YGGCCR 2 cut(s) 3, 535
Eam1104I CTCTTC 2 cut(s) 59, 345
EarI CTCTTC 2 cut(s) 59, 345
EciI GGCGGA 2 cut(s) 75, 125
Eco130I CCWWGG 3 cut(s) 627, 856, 1019
Eco147I AGGCCT 1 cut(s) 1018
Eco31I GGTCTC 1 cut(s) 878
Eco57I CTGAAG 4 cut(s) 228, 1076, 1190, 1281
Eco72I CACGTG 1 cut(s) 1151
Eco81I CCTNAGG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 1226
EcoRI GAATTC 1 cut(s) 1002
EcoRII CCWGG 1 cut(s) 1316
EcoT14I CCWWGG 3 cut(s) 627, 856, 1019
EcoT22I ATGCAT 2 cut(s) 573, 991
ErhI CCWWGG 3 cut(s) 627, 856, 1019
FalI AAGNNNNNCTT 8 cut(s) 583, 615, 1240, 1272, 1280, 1312, 1332, 1364
FaqI GGGAC 1 cut(s) 113
FauI CCCGC 1 cut(s) 106
FbaI TGATCA 1 cut(s) 1048
Fnu4HI GCNGC 8 cut(s) 66, 69, 72, 162, 165, 774, 903, 1145
Fsp4HI GCNGC 8 cut(s) 66, 69, 72, 162, 165, 774, 903, 1145
FspBI CTAG 3 cut(s) 804, 821, 851
GlaI GCGC 2 cut(s) 23, 25
GluI GCNGC 8 cut(s) 66, 69, 72, 162, 165, 774, 903, 1145
GsuI CTGGAG 1 cut(s) 993
HaeIII GGCC 3 cut(s) 5, 537, 1018
HapII CCGG 2 cut(s) 361, 452
HhaI GCGC 2 cut(s) 24, 26
Hin6I GCGC 2 cut(s) 22, 24
HinP1I GCGC 2 cut(s) 22, 24
HincII GTYRAC 2 cut(s) 317, 624
HindII GTYRAC 2 cut(s) 317, 624
HindIII AAGCTT 2 cut(s) 29, 308
HinfI GANTC 4 cut(s) 149, 374, 1029, 1383
HpaII CCGG 2 cut(s) 361, 452
HphI GGTGA 2 cut(s) 73, 239
Hpy166II GTNNAC 5 cut(s) 247, 266, 317, 624, 1187
Hpy188I TCNGA 8 cut(s) 91, 469, 689, 931, 1087, 1095, 1137, 1261
Hpy188III TCNNGA 9 cut(s) 146, 361, 430, 664, 851, 1226, 1228, 1237, 1387
Hpy8I GTNNAC 5 cut(s) 247, 266, 317, 624, 1187
HpyAV CCTTC 6 cut(s) 152, 184, 203, 907, 1230, 1242
HpyCH4III ACNGT 5 cut(s) 127, 195, 801, 1076, 1082
HpyCH4IV ACGT 2 cut(s) 262, 1150
HpyCH4V TGCA 9 cut(s) 260, 506, 571, 757, 905, 941, 989, 998, 1213
HpyF3I CTNAG 7 cut(s) 27, 251, 590, 605, 1128, 1136, 1385
HpySE526I ACGT 2 cut(s) 262, 1150
HspAI GCGC 2 cut(s) 22, 24
Kpn2I TCCGGA 1 cut(s) 360
KpnI GGTACC 1 cut(s) 347
Ksp22I TGATCA 1 cut(s) 1048
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 7 cut(s) 11, 475, 684, 979, 1048, 1190, 1292
LmnI GCTCC 2 cut(s) 62, 644
Lsp1109I GCAGC 2 cut(s) 889, 1131
LweI GCATC 2 cut(s) 922, 928
MaeI CTAG 3 cut(s) 804, 821, 851
MaeII ACGT 2 cut(s) 262, 1150
MaeIII GTNAC 2 cut(s) 761, 1076
MalI GATC 7 cut(s) 13, 477, 686, 981, 1050, 1192, 1294
MboI GATC 7 cut(s) 11, 475, 684, 979, 1048, 1190, 1292
MboII GAAGA 7 cut(s) 46, 104, 362, 393, 565, 1183, 1248
MflI RGATCY 3 cut(s) 684, 979, 1292
MhlI GDGCHC 1 cut(s) 649
MlsI TGGCCA 2 cut(s) 5, 537
MluNI TGGCCA 2 cut(s) 5, 537
MlyI GAGTC 4 cut(s) 143, 383, 1038, 1377
MmeI TCCRAC 2 cut(s) 712, 1225
Mox20I TGGCCA 2 cut(s) 5, 537
Mph1103I ATGCAT 2 cut(s) 573, 991
MroI TCCGGA 1 cut(s) 360
MroXI GAANNNNTTC 1 cut(s) 1252
MscI TGGCCA 2 cut(s) 5, 537
MseI TTAA 3 cut(s) 227, 285, 1163
MslI CAYNNNNRTG 1 cut(s) 107
Msp20I TGGCCA 2 cut(s) 5, 537
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 2 cut(s) 361, 452
MspR9I CCNGG 1 cut(s) 1318
Mva1269I GAATGC 1 cut(s) 816
MvaI CCWGG 1 cut(s) 1318
MvnI CGCG 4 cut(s) 10, 24, 68, 147
NcoI CCATGG 2 cut(s) 627, 856
NdeII GATC 7 cut(s) 11, 475, 684, 979, 1048, 1190, 1292
NlaIV GGNNCC 4 cut(s) 64, 345, 686, 1218
NmeAIII GCCGAG 2 cut(s) 1324, 1378
NmuCI GTSAC 2 cut(s) 761, 1076
NruI TCGCGA 1 cut(s) 147
NsiI ATGCAT 2 cut(s) 573, 991
NspI RCATGY 3 cut(s) 571, 575, 773
PaeI GCATGC 1 cut(s) 575
PaeR7I CTCGAG 1 cut(s) 1226
PagI TCATGA 1 cut(s) 1236
PauI GCGCGC 1 cut(s) 22
PceI AGGCCT 1 cut(s) 1018
PctI GAATGC 1 cut(s) 816
PdmI GAANNNNTTC 1 cut(s) 1252
PkrI GCNGC 8 cut(s) 67, 70, 73, 163, 166, 775, 904, 1146
PleI GAGTC 4 cut(s) 143, 382, 1037, 1377
PmaCI CACGTG 1 cut(s) 1151
PmlI CACGTG 1 cut(s) 1151
PpsI GAGTC 4 cut(s) 143, 382, 1037, 1377
Ppu21I YACGTR 2 cut(s) 263, 1151
PshAI GACNNNNGTC 1 cut(s) 858
PsiI TTATAA 3 cut(s) 582, 867, 1355
Psp6I CCWGG 1 cut(s) 1316
PspCI CACGTG 1 cut(s) 1151
PspGI CCWGG 1 cut(s) 1316
PspN4I GGNNCC 4 cut(s) 64, 345, 686, 1218
PsuI RGATCY 3 cut(s) 684, 979, 1292
PteI GCGCGC 1 cut(s) 22
RruI TCGCGA 1 cut(s) 147
RsaI GTAC 2 cut(s) 345, 846
RsaNI GTAC 2 cut(s) 344, 845
RseI CAYNNNNRTG 1 cut(s) 107
SacII CCGCGG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 227, 285, 1163
SatI GCNGC 8 cut(s) 66, 69, 72, 162, 165, 774, 903, 1145
Sau3AI GATC 7 cut(s) 11, 475, 684, 979, 1048, 1190, 1292
ScaI AGTACT 1 cut(s) 846
SchI GAGTC 4 cut(s) 143, 383, 1038, 1377
ScrFI CCNGG 1 cut(s) 1318
SduI GDGCHC 1 cut(s) 649
SfaNI GCATC 2 cut(s) 922, 928
Sfr274I CTCGAG 1 cut(s) 1226
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SlaI CTCGAG 1 cut(s) 1226
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 1226
SmoI CTYRAG 1 cut(s) 1226
SphI GCATGC 1 cut(s) 575
SseBI AGGCCT 1 cut(s) 1018
SspMI CTAG 3 cut(s) 804, 821, 851
StuI AGGCCT 1 cut(s) 1018
StyD4I CCNGG 1 cut(s) 1316
StyI CCWWGG 3 cut(s) 627, 856, 1019
TaaI ACNGT 5 cut(s) 127, 195, 801, 1076, 1082
TaiI ACGT 2 cut(s) 265, 1153
TaqI TCGA 4 cut(s) 177, 429, 639, 1227
TatI WGTACW 1 cut(s) 844
TauI GCSGC 6 cut(s) 68, 71, 74, 164, 167, 776
Tru1I TTAA 3 cut(s) 227, 285, 1163
Tru9I TTAA 3 cut(s) 227, 285, 1163
TscAI CASTG 5 cut(s) 198, 223, 721, 1081, 1416
TseFI GTSAC 2 cut(s) 761, 1076
TseI GCWGC 2 cut(s) 902, 1144
Tsp45I GTSAC 2 cut(s) 761, 1076
TspDTI ATGAA 5 cut(s) 125, 255, 423, 711, 1225
TspRI CASTG 5 cut(s) 198, 223, 721, 1081, 1416
XapI RAATTY 4 cut(s) 459, 470, 632, 1002
XbaI TCTAGA 1 cut(s) 850
XceI RCATGY 3 cut(s) 571, 575, 773
XhoI CTCGAG 1 cut(s) 1226
XmnI GAANNNNTTC 1 cut(s) 1252
XspI CTAG 3 cut(s) 804, 821, 851
ZrmI AGTACT 1 cut(s) 846
Zsp2I ATGCAT 2 cut(s) 573, 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.