FvH4_7g25980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018877
Physical Location & Seq
Reverse (-)
19754840 .. 19759485
4646 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25980.t1

Sequence Viewer

Length: 465 bp
ATGATTGAGAAAAAAGACTTTAACTGGGATCCGGCTTTTCTTTCGGAGTTCGAATATTCTGTGGACGAATTCCGTGACTTTTCAAAGGAGGTCAAAGAGACCGGTGATAGTGCTAACTTAGACATGCAATGTGTTCAAGTAAAATCGGAGAGGTATCTCTTGTTCTTCGACGTGGGTTGTGGACTGCAGGAAAACCTGAACTTCCTCATCACCAAGAGCTTTAAGGCATATATGGGGAAGCAGAGCGGATGCCATTGTGGAGTTGATGGTGAGCAATCTCAAAATAACAATGGAGGTGGAAAGAGTCAATCTTCTAATAACAATGGAGAAGAAAAGAGGCAATCCCCTAGTAACAATGGAGGGAAAAAGAGCTCACCTAGACGGAATCAGAAAAAGGCATCAATATTCAGAGGGATGAGAAGATGTATGTTTGTGAGTTGTTTCCCTGTGTCATACAATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.44

Weight (kDa)

8.51

Isoelectric Point (pI)

58.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018877)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25980
prunus_persica Prupe.6G294500_v2.0.a1 Prupe.6G294500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372361
rosa_laevigata RLG00000026904
rosa_roxburghii Rroxscaffold_4G00285010
rosa_rugosa Rorug01G0371300
rosa_samantha Rh1CG356900 Rh1DG374600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 246
AciI CCGC 1 cut(s) 246
AclWI GGATC 2 cut(s) 23, 36
AcsI RAATTY 1 cut(s) 68
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 2 cut(s) 84, 137
AjiI CACGTC 1 cut(s) 172
AluBI AGCT 2 cut(s) 219, 372
AluI AGCT 2 cut(s) 219, 372
Alw21I GWGCWC 1 cut(s) 374
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 2 cut(s) 23, 36
ApoI RAATTY 1 cut(s) 68
AsiGI ACCGGT 1 cut(s) 101
AsuHPI GGTGA 4 cut(s) 116, 202, 281, 366
AsuII TTCGAA 1 cut(s) 51
BamHI GGATCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 374
BccI CCATC 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 2 cut(s) 348, 378
BfmI CTRYAG 1 cut(s) 185
BmgBI CACGTC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 30
BmrI ACTGGG 1 cut(s) 34
BmsI GCATC 2 cut(s) 239, 407
BmuI ACTGGG 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 134
BseGI GGATG 2 cut(s) 254, 420
BseMI GCAATG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 29
BshTI ACCGGT 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 374
BsiSI CCGG 2 cut(s) 32, 102
BsmAI GTCTC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 92
Bsp119I TTCGAA 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 30
BspMAI CTGCAG 1 cut(s) 189
BspPI GGATC 2 cut(s) 23, 36
BspT104I TTCGAA 1 cut(s) 51
BspTNI GGTCTC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 101
BssMI GATC 1 cut(s) 28
BstBI TTCGAA 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 118
BstF5I GGATG 2 cut(s) 254, 420
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 28
BstNSI RCATGY 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 2 cut(s) 254, 420
Cfr10I RCCGGY 1 cut(s) 101
CspAI ACCGGT 1 cut(s) 101
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 1 cut(s) 124
CviJI RGCY 3 cut(s) 35, 219, 372
CviKI_1 RGCY 3 cut(s) 35, 219, 372
DdeI CTNAG 1 cut(s) 118
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Ecl136II GAGCTC 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 374
Eco31I GGTCTC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 374
FaeI CATG 1 cut(s) 127
FaiI YATR 6 cut(s) 125, 229, 231, 233, 428, 454
FatI CATG 1 cut(s) 123
FokI GGATG 2 cut(s) 261, 427
FriOI GRGCYC 1 cut(s) 374
FspBI CTAG 2 cut(s) 348, 378
HapII CCGG 2 cut(s) 32, 102
Hin1II CATG 1 cut(s) 127
HinfI GANTC 2 cut(s) 304, 385
HpaII CCGG 2 cut(s) 32, 102
HphI GGTGA 4 cut(s) 116, 202, 281, 366
Hpy166II GTNNAC 2 cut(s) 64, 182
Hpy188I TCNGA 4 cut(s) 46, 148, 390, 410
Hpy8I GTNNAC 2 cut(s) 64, 182
Hpy99I CGWCG 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 127, 187
HpyF3I CTNAG 1 cut(s) 118
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 127
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 6 cut(s) 10, 45, 115, 173, 209, 459
LweI GCATC 2 cut(s) 239, 407
MaeI CTAG 2 cut(s) 348, 378
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 74, 350
MalI GATC 1 cut(s) 30
MbiI CCGCTC 1 cut(s) 246
MboI GATC 1 cut(s) 28
MboII GAAGA 4 cut(s) 157, 303, 341, 432
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 1 cut(s) 68
MlyI GAGTC 1 cut(s) 313
MnlI CCTC 7 cut(s) 82, 144, 215, 287, 330, 353, 404
MseI TTAA 2 cut(s) 21, 222
MspI CCGG 2 cut(s) 32, 102
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 1 cut(s) 127
NspV TTCGAA 1 cut(s) 51
PfeI GAWTC 1 cut(s) 385
PinAI ACCGGT 1 cut(s) 101
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 374
PspN4I GGNNCC 1 cut(s) 30
PsrI GAACNNNNNNTAC 2 cut(s) 146, 178
PstI CTGCAG 1 cut(s) 189
PsuI RGATCY 1 cut(s) 28
SacI GAGCTC 1 cut(s) 374
SaqAI TTAA 2 cut(s) 21, 222
Sau3AI GATC 1 cut(s) 28
SchI GAGTC 1 cut(s) 313
SduI GDGCHC 1 cut(s) 374
SetI ASST 8 cut(s) 93, 155, 174, 198, 221, 298, 374, 379
SfaNI GCATC 2 cut(s) 239, 407
SfcI CTRYAG 1 cut(s) 185
SfuI TTCGAA 1 cut(s) 51
Sse9I AATT 1 cut(s) 68
SsiI CCGC 1 cut(s) 246
SspI AATATT 2 cut(s) 56, 405
SspMI CTAG 2 cut(s) 348, 378
SstI GAGCTC 1 cut(s) 374
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 51, 168
TasI AATT 1 cut(s) 68
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 2 cut(s) 21, 222
Tru9I TTAA 2 cut(s) 21, 222
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspGWI ACGGA 2 cut(s) 62, 397
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 127
XspI CTAG 2 cut(s) 348, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.