RLG00000026904

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018877
Physical Location & Seq
Forward (+)
6887550 .. 6890465
2916 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026904

Sequence Viewer

Length: 618 bp
ATGGGGAAGCATCCAAGATGTCGTTGTGGAGATGATGGTGATCAATCCCCTATTGACAATGGAGAAAGAGGACCTGTGTGCAATGATAACCAACTGAAGAACAAGGCTGAGATCCCTGGGAAGAACATAATTAGAAACGTAGAAGATTTGGAATTTGACTTTTGTCAAAACCTACAAATAGTTCACTTAACATGGAAACCTATGATGCCATCGTTGAATATACCTTTGAGGCCTGCAATTATAAGCATATCCAACCTTCCTCATCACCAAGAGCTTAGAGGTGATTTGACTGGTTGGGGGCTTGAAGGAGGAGTAAGATCATATATGGGGAAGCGTCAAGGATGTTGTTCTGGAGGTGATCATGGTGATCAATCTCCGAATAACAATGGAGCTGGAAAGAGTCAATCTCCTAATAACAATGGAGGAGAAAAGAGCCAATCACCTAATAACAATGGAGGAAAGAAGAGCTCACCTAGACGGAATCATAAAAAGGCATCAATATTTAGAGGGATGGGAAGATGTATGTTTGTGAGTTGTTTCCCTGTCATACAACGTTTAGGAGTAGATGAATGTAGGCACCACCACGACGATCAGCCTAAACTTTTTTCAGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.61

Weight (kDa)

8.9

Isoelectric Point (pI)

60.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018877)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25980
prunus_persica Prupe.6G294500_v2.0.a1 Prupe.6G294500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372361
rosa_laevigata RLG00000026904
rosa_roxburghii Rroxscaffold_4G00285010
rosa_rugosa Rorug01G0371300
rosa_samantha Rh1CG356900 Rh1DG374600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 576
AclI AACGTT 1 cut(s) 553
AclWI GGATC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 217, 305
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 3 cut(s) 274, 392, 468
AluI AGCT 3 cut(s) 274, 392, 468
Alw21I GWGCWC 1 cut(s) 470
AlwI GGATC 1 cut(s) 106
AoxI GGCC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 7 cut(s) 50, 257, 293, 368, 377, 432, 462
AvaII GGWCC 1 cut(s) 71
BanI GGYRCC 1 cut(s) 576
BanII GRGCYC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 470
BccI CCATC 3 cut(s) 29, 217, 505
BciT130I CCWGG 1 cut(s) 117
BclI TGATCA 3 cut(s) 40, 358, 367
BfaI CTAG 1 cut(s) 474
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 578
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 3 cut(s) 19, 195, 503
BoxI GACNNNNGTC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 391, 423
BpmI CTGGAG 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 115, 116
Bse1I ACTGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 115, 116
BseGI GGATG 3 cut(s) 10, 347, 516
BseJI GATNNNNATC 1 cut(s) 39
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 2 cut(s) 324, 438
BshFI GGCC 1 cut(s) 232
BshNI GGYRCC 1 cut(s) 576
BsiHKAI GWGCWC 1 cut(s) 470
BsnI GGCC 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 6 cut(s) 40, 111, 317, 358, 367, 589
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 578
BspPI GGATC 1 cut(s) 106
BspQI GCTCTTC 1 cut(s) 458
BspT107I GGYRCC 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 115, 116
BssMI GATC 6 cut(s) 40, 111, 317, 358, 367, 589
Bst2UI CCWGG 1 cut(s) 117
Bst6I CTCTTC 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 108, 275
BstF5I GGATG 3 cut(s) 10, 347, 516
BstKTI GATC 6 cut(s) 43, 114, 320, 361, 370, 592
BstMBI GATC 6 cut(s) 40, 111, 317, 358, 367, 589
BstNI CCWGG 1 cut(s) 117
BstPAI GACNNNNGTC 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 3 cut(s) 10, 347, 516
Cac8I GCNNGC 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 71
CseI GACGC 1 cut(s) 323
CviAII CATG 2 cut(s) 192, 362
CviJI RGCY 8 cut(s) 107, 232, 274, 301, 392, 435, 468, 595
CviKI_1 RGCY 8 cut(s) 107, 232, 274, 301, 392, 435, 468, 595
DdeI CTNAG 2 cut(s) 108, 275
DpnI GATC 6 cut(s) 42, 113, 319, 360, 369, 591
DpnII GATC 6 cut(s) 40, 111, 317, 358, 367, 589
Eam1104I CTCTTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 458
Ecl136II GAGCTC 1 cut(s) 468
Eco147I AGGCCT 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 468
EcoO109I RGGNCCY 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 470
FaeI CATG 2 cut(s) 195, 365
FatI CATG 2 cut(s) 191, 361
FbaI TGATCA 3 cut(s) 40, 358, 367
FokI GGATG 2 cut(s) 354, 523
FriOI GRGCYC 1 cut(s) 470
FspBI CTAG 1 cut(s) 474
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 1 cut(s) 232
HgaI GACGC 1 cut(s) 323
Hin1II CATG 2 cut(s) 195, 365
HinfI GANTC 2 cut(s) 400, 481
HphI GGTGA 7 cut(s) 50, 257, 293, 368, 377, 432, 462
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 378
Hpy188III TCNNGA 2 cut(s) 351, 609
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 1 cut(s) 590
HpyAV CCTTC 2 cut(s) 266, 299
HpyCH4IV ACGT 2 cut(s) 138, 553
HpyCH4V TGCA 2 cut(s) 81, 236
HpyF3I CTNAG 2 cut(s) 108, 275
HpySE526I ACGT 2 cut(s) 138, 553
Hsp92II CATG 2 cut(s) 195, 365
Ksp22I TGATCA 3 cut(s) 40, 358, 367
Kzo9I GATC 6 cut(s) 40, 111, 317, 358, 367, 589
LguI GCTCTTC 1 cut(s) 458
LmnI GCTCC 1 cut(s) 389
LpnPI CCDG 9 cut(s) 87, 102, 129, 246, 276, 336, 378, 555, 594
LweI GCATC 3 cut(s) 19, 195, 503
MaeI CTAG 1 cut(s) 474
MaeII ACGT 2 cut(s) 138, 553
MalI GATC 6 cut(s) 42, 113, 319, 360, 369, 591
MboI GATC 6 cut(s) 40, 111, 317, 358, 367, 589
MboII GAAGA 5 cut(s) 109, 133, 155, 475, 528
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 470
MluCI AATT 3 cut(s) 129, 152, 237
MlyI GAGTC 1 cut(s) 409
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 9 cut(s) 62, 222, 270, 272, 302, 347, 416, 449, 500
MseI TTAA 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
NdeII GATC 6 cut(s) 40, 111, 317, 358, 367, 589
NlaIII CATG 2 cut(s) 195, 365
NlaIV GGNNCC 1 cut(s) 578
PasI CCCWGGG 1 cut(s) 116
PceI AGGCCT 1 cut(s) 232
PciSI GCTCTTC 1 cut(s) 458
PfeI GAWTC 1 cut(s) 481
PleI GAGTC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 408
PpuMI RGGWCCY 1 cut(s) 71
PshAI GACNNNNGTC 1 cut(s) 162
PsiI TTATAA 1 cut(s) 242
Psp124BI GAGCTC 1 cut(s) 470
Psp1406I AACGTT 1 cut(s) 553
Psp5II RGGWCCY 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 578
PspPI GGNCC 1 cut(s) 71
PspPPI RGGWCCY 1 cut(s) 71
PsuI RGATCY 1 cut(s) 111
SacI GAGCTC 1 cut(s) 470
SapI GCTCTTC 1 cut(s) 458
SaqAI TTAA 1 cut(s) 188
Sau3AI GATC 6 cut(s) 40, 111, 317, 358, 367, 589
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 1 cut(s) 409
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 470
SfaNI GCATC 3 cut(s) 19, 195, 503
SinI GGWCC 1 cut(s) 71
Sse9I AATT 3 cut(s) 129, 152, 237
SseBI AGGCCT 1 cut(s) 232
SspI AATATT 1 cut(s) 501
SspMI CTAG 1 cut(s) 474
SstI GAGCTC 1 cut(s) 470
StuI AGGCCT 1 cut(s) 232
StyD4I CCNGG 1 cut(s) 115
TaiI ACGT 2 cut(s) 141, 556
TasI AATT 3 cut(s) 129, 152, 237
TfiI GAWTC 1 cut(s) 481
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 582
TspGWI ACGGA 1 cut(s) 493
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 1 cut(s) 152
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.