Rorug01G0371300

Glycerol-3-phosphate dehydrogenase NAD( )

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0010329
Physical Location & Seq
Forward (+)
48510345 .. 48515248
4904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0371300.1

Sequence Viewer

Length: 1086 bp
ATGTCTTCCAACTTGAAGAACTTCTTTTTTAATGAACTGAAAACAGCCACAAGGAACTTTCGTCCTGACAGTATGGTGGGTGAAGGCGGTTTTGGTAGTGTTTTTAAGGGCTGGGTTGATGAGAATGCATTAACAGCTGCCAAGCCTGGTACTGGAATGGTTATTGCTGTGAAGAGGCTTAACCAAGAAGGTCTCCAGGGTCACAAGGAATGGTTGACAGAAATCAACTATCTTGGACAGCTCCGACACCCAAATCTTGTGAAGCTGATTGGTTATTGCCTGGAGGATGACCACCGGCTTCTGGTGTATGAATTCATGCCTCGTGGCAGCTTGGACAATCATCTATTTAGAAGGGCTTCTTACTTTCAACCACTTTCATGGTCCCTTCGTATGAAGATTGCCCTTGGTGCTGCTAAGGGTCTAGCATTTCTTCACAGTGATGAGGCAAAAGTGATCTATCGGGACTTTAAAACTTCTAATATCCTGTTGGATTCAGCCTACAATGCCAAACTCTCTGACTTTGGTTTAGCCAAGGATGGACCAGCAGGTGATAGAAGCCACGTCTCAACAAGGGTTATGGGGACATATGGGTATGCGGCTCCTGAGTATATGGCCACAGGTCATTTAACCGCCAAAAGTGATGTGTATAGTTTTGGGGTTGTTATGCTCGAAATGTTGTCTGGAAGACGAGCTGTGGACAAGAACCGGCCTACAGGGGAACACAGCTTAGTTGAGTGGGCCAAACCTTACCTTGCCAGCAAACGCAAAGTTCTCCAAGTTTTTGACGCTCGTATTGATGGCCAGTACTCTGTGGCTTCAGCTCTTAAAGCAGTTAACCTTGCAATTCGATGCTTATCAACAGAACCCAAGTTTAGGCCAATCATGAATGATGTGGTAAAAGCATTAGAGCAGCTTCAGGAACCTGAAGACATGGAGGGTCCGGGACCCTCCCAAAATGAACCTCGCCAAAATCTTCATGCCAGTTCAAGCAATGGTCCCCAAAATCGAAGGAGAAGTATGAACGGAACCAGCGATGCAAGAAATGCTTCTCTTCACAGGACATCTGCCGCACGCGGAAATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01110 ko04011 map00564 map01110 map04011
Pfam Domains
Protein Families
NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

361

Amino Acids

40.13

Weight (kDa)

9.46

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 23 - 300 1.2e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 24 - 302 6.6e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 536
Acc36I ACCTGC 1 cut(s) 536
AccII CGCG 1 cut(s) 1074
AciI CCGC 5 cut(s) 87, 596, 630, 1068, 1074
AcoI YGGCCR 2 cut(s) 612, 799
AcsI RAATTY 1 cut(s) 311
AcuI CTGAAG 3 cut(s) 801, 899, 945
AfaI GTAC 2 cut(s) 151, 806
AfiI CCNNNNNNNGG 3 cut(s) 152, 301, 873
AgsI TTSAA 3 cut(s) 16, 368, 987
AjiI CACGTC 1 cut(s) 562
AjnI CCWGG 3 cut(s) 145, 195, 279
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AluBI AGCT 8 cut(s) 137, 241, 265, 330, 692, 726, 821, 913
AluI AGCT 8 cut(s) 137, 241, 265, 330, 692, 726, 821, 913
Alw26I GTCTC 2 cut(s) 197, 568
AoxI GGCC 5 cut(s) 612, 707, 738, 799, 875
ApeKI GCWGC 4 cut(s) 137, 327, 410, 910
ApoI RAATTY 1 cut(s) 311
Asp700I GAANNNNTTC 3 cut(s) 20, 355, 1045
AspS9I GGNCC 6 cut(s) 381, 539, 738, 938, 944, 995
AsuC2I CCSGG 1 cut(s) 942
AsuHPI GGTGA 2 cut(s) 92, 560
AvaII GGWCC 5 cut(s) 381, 539, 938, 944, 995
BalI TGGCCA 2 cut(s) 614, 801
BauI CACGAG 1 cut(s) 321
BbsI GAAGAC 2 cut(s) 691, 933
BbvI GCAGC 4 cut(s) 124, 339, 397, 922
BccI CCATC 2 cut(s) 530, 791
BciT130I CCWGG 3 cut(s) 147, 197, 281
BcnI CCSGG 1 cut(s) 942
BcoDI GTCTC 2 cut(s) 197, 568
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 711
BfuAI ACCTGC 1 cut(s) 536
BisI GCNGC 6 cut(s) 138, 328, 411, 597, 911, 1068
BlsI GCNGC 6 cut(s) 139, 329, 412, 598, 912, 1069
BmcAI AGTACT 1 cut(s) 806
Bme1390I CCNGG 4 cut(s) 147, 197, 281, 942
Bme18I GGWCC 5 cut(s) 381, 539, 938, 944, 995
BmgBI CACGTC 1 cut(s) 562
BmgT120I GGNCC 6 cut(s) 381, 539, 738, 938, 944, 995
BmiI GGNNCC 8 cut(s) 383, 600, 921, 939, 945, 946, 997, 1027
BmrFI CCNGG 4 cut(s) 147, 197, 281, 942
BmsI GCATC 2 cut(s) 839, 1024
BpiI GAAGAC 2 cut(s) 691, 933
BpmI CTGGAG 2 cut(s) 179, 302
Bpu10I CCTNAGC 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 942
BsaBI GATNNNNATC 1 cut(s) 853
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 3 cut(s) 196, 403, 531
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 301, 873
Bse118I RCCGGY 2 cut(s) 294, 705
Bse1I ACTGG 3 cut(s) 157, 802, 981
Bse3DI GCAATG 1 cut(s) 997
Bse8I GATNNNNATC 1 cut(s) 853
BseBI CCWGG 3 cut(s) 147, 197, 281
BseDI CCNNGG 3 cut(s) 196, 403, 531
BseGI GGATG 2 cut(s) 292, 541
BseJI GATNNNNATC 1 cut(s) 853
BseLI CCNNNNNNNGG 3 cut(s) 152, 301, 873
BseMI GCAATG 1 cut(s) 997
BseMII CTCAG 1 cut(s) 594
BseNI ACTGG 3 cut(s) 157, 802, 981
BseXI GCAGC 4 cut(s) 124, 339, 397, 922
BseYI CCCAGC 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 1074
BshFI GGCC 5 cut(s) 614, 709, 740, 801, 877
BsiSI CCGG 3 cut(s) 295, 706, 941
BslFI GGGAC 5 cut(s) 367, 476, 595, 957, 981
BslI CCNNNNNNNGG 3 cut(s) 152, 301, 873
BsmAI GTCTC 2 cut(s) 197, 568
BsmBI CGTCTC 1 cut(s) 568
BsmFI GGGAC 5 cut(s) 367, 476, 595, 957, 981
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 5 cut(s) 614, 709, 740, 801, 877
Bso31I GGTCTC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 453
BspACI CCGC 5 cut(s) 87, 596, 630, 1068, 1074
BspANI GGCC 5 cut(s) 614, 709, 740, 801, 877
BspCNI CTCAG 1 cut(s) 595
BspFNI CGCG 1 cut(s) 1074
BspHI TCATGA 1 cut(s) 882
BspLI GGNNCC 8 cut(s) 383, 600, 921, 939, 945, 946, 997, 1027
BspMI ACCTGC 1 cut(s) 536
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 997
BsrFI RCCGGY 2 cut(s) 294, 705
BsrI ACTGG 3 cut(s) 157, 802, 981
BssAI RCCGGY 2 cut(s) 294, 705
BssECI CCNNGG 3 cut(s) 196, 403, 531
BssMI GATC 1 cut(s) 453
BssSI CACGAG 1 cut(s) 321
BssT1I CCWWGG 2 cut(s) 403, 531
Bst2BI CACGAG 1 cut(s) 321
Bst2UI CCWGG 3 cut(s) 147, 197, 281
Bst4CI ACNGT 2 cut(s) 71, 437
Bst6I CTCTTC 2 cut(s) 167, 1056
BstAPI GCANNNNNTGC 1 cut(s) 1043
BstC8I GCNNGC 2 cut(s) 757, 1072
BstDEI CTNAG 3 cut(s) 414, 603, 727
BstF5I GGATG 2 cut(s) 292, 541
BstFNI CGCG 1 cut(s) 1074
BstKTI GATC 1 cut(s) 456
BstMAI GTCTC 2 cut(s) 197, 568
BstMBI GATC 1 cut(s) 453
BstMWI GCNNNNNNNGC 5 cut(s) 134, 407, 503, 827, 1043
BstNI CCWGG 3 cut(s) 147, 197, 281
BstSCI CCNGG 4 cut(s) 145, 195, 279, 940
BstSFI CTRYAG 1 cut(s) 711
BstUI CGCG 1 cut(s) 1074
BstV1I GCAGC 4 cut(s) 124, 339, 397, 922
BstV2I GAAGAC 2 cut(s) 691, 933
BstXI CCANNNNNNTGG 1 cut(s) 378
BsuRI GGCC 5 cut(s) 614, 709, 740, 801, 877
BtgZI GCGATG 1 cut(s) 1047
BtrI CACGTC 1 cut(s) 562
BtsCI GGATG 2 cut(s) 292, 541
BtsIMutI CAGTG 1 cut(s) 442
BveI ACCTGC 1 cut(s) 536
Cac8I GCNNGC 2 cut(s) 757, 1072
CciI TCATGA 1 cut(s) 882
Cfr10I RCCGGY 2 cut(s) 294, 705
Cfr13I GGNCC 6 cut(s) 381, 539, 738, 938, 944, 995
CseI GACGC 1 cut(s) 794
Csp6I GTAC 2 cut(s) 150, 805
CviAII CATG 5 cut(s) 316, 378, 883, 931, 977
CviQI GTAC 2 cut(s) 150, 805
DdeI CTNAG 3 cut(s) 414, 603, 727
DpnI GATC 1 cut(s) 455
DpnII GATC 1 cut(s) 453
DraI TTTAAA 1 cut(s) 469
EaeI YGGCCR 2 cut(s) 612, 799
Eam1104I CTCTTC 2 cut(s) 167, 1056
EarI CTCTTC 2 cut(s) 167, 1056
Eco130I CCWWGG 2 cut(s) 403, 531
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 5 cut(s) 381, 539, 938, 944, 995
Eco57I CTGAAG 3 cut(s) 801, 899, 945
EcoO109I RGGNCCY 1 cut(s) 944
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 3 cut(s) 145, 195, 279
EcoT14I CCWWGG 2 cut(s) 403, 531
EcoT22I ATGCAT 1 cut(s) 130
ErhI CCWWGG 2 cut(s) 403, 531
Esp3I CGTCTC 1 cut(s) 568
FaeI CATG 5 cut(s) 319, 381, 886, 934, 980
FalI AAGNNNNNCTT 6 cut(s) 8, 40, 343, 375, 1030, 1062
FaqI GGGAC 5 cut(s) 367, 476, 595, 957, 981
FatI CATG 5 cut(s) 315, 377, 882, 930, 976
FauNDI CATATG 1 cut(s) 586
Fnu4HI GCNGC 6 cut(s) 138, 328, 411, 597, 911, 1068
FokI GGATG 2 cut(s) 299, 548
Fsp4HI GCNGC 6 cut(s) 138, 328, 411, 597, 911, 1068
FspBI CTAG 1 cut(s) 422
GluI GCNGC 6 cut(s) 138, 328, 411, 597, 911, 1068
GsaI CCCAGC 1 cut(s) 115
GsuI CTGGAG 2 cut(s) 179, 302
HaeIII GGCC 5 cut(s) 614, 709, 740, 801, 877
HapII CCGG 3 cut(s) 295, 706, 941
HgaI GACGC 1 cut(s) 794
Hin1II CATG 5 cut(s) 319, 381, 886, 934, 980
HincII GTYRAC 2 cut(s) 216, 835
HindII GTYRAC 2 cut(s) 216, 835
HinfI GANTC 1 cut(s) 491
HpaI GTTAAC 1 cut(s) 835
HpaII CCGG 3 cut(s) 295, 706, 941
HphI GGTGA 2 cut(s) 92, 560
Hpy166II GTNNAC 3 cut(s) 216, 697, 835
Hpy188I TCNGA 2 cut(s) 245, 517
Hpy188III TCNNGA 6 cut(s) 65, 461, 602, 681, 883, 917
Hpy8I GTNNAC 3 cut(s) 216, 697, 835
HpyAV CCTTC 5 cut(s) 77, 182, 345, 395, 1002
HpyCH4III ACNGT 2 cut(s) 71, 437
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 3 cut(s) 128, 842, 1037
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 407, 503, 827, 1043
HpyF3I CTNAG 3 cut(s) 414, 603, 727
HpySE526I ACGT 1 cut(s) 561
Hsp92II CATG 5 cut(s) 319, 381, 886, 934, 980
KflI GGGWCCC 1 cut(s) 944
KspAI GTTAAC 1 cut(s) 835
Kzo9I GATC 1 cut(s) 453
LmnI GCTCC 2 cut(s) 246, 604
Lsp1109I GCAGC 4 cut(s) 124, 339, 397, 922
LweI GCATC 2 cut(s) 839, 1024
MaeI CTAG 1 cut(s) 422
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 455
MboI GATC 1 cut(s) 453
MboII GAAGA 8 cut(s) 28, 184, 406, 422, 696, 938, 965, 1043
MlsI TGGCCA 2 cut(s) 614, 801
MluCI AATT 2 cut(s) 311, 843
MluNI TGGCCA 2 cut(s) 614, 801
MmeI TCCRAC 3 cut(s) 33, 268, 468
MnlI CCTC 7 cut(s) 168, 277, 330, 436, 928, 958, 972
Mox20I TGGCCA 2 cut(s) 614, 801
Mph1103I ATGCAT 1 cut(s) 130
MroXI GAANNNNTTC 3 cut(s) 20, 355, 1045
MscI TGGCCA 2 cut(s) 614, 801
MseI TTAA 8 cut(s) 30, 105, 131, 180, 468, 626, 825, 834
MslI CAYNNNNRTG 2 cut(s) 376, 438
Msp20I TGGCCA 2 cut(s) 614, 801
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 3 cut(s) 295, 706, 941
MspR9I CCNGG 4 cut(s) 147, 197, 281, 942
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 3 cut(s) 147, 197, 281
MvnI CGCG 1 cut(s) 1074
MwoI GCNNNNNNNGC 5 cut(s) 134, 407, 503, 827, 1043
NciI CCSGG 1 cut(s) 942
NdeI CATATG 1 cut(s) 586
NdeII GATC 1 cut(s) 453
NlaIII CATG 5 cut(s) 319, 381, 886, 934, 980
NlaIV GGNNCC 8 cut(s) 383, 600, 921, 939, 945, 946, 997, 1027
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 130
PagI TCATGA 1 cut(s) 882
PaqCI CACCTGC 1 cut(s) 536
PcsI WCGNNNNNNNCGW 1 cut(s) 1029
PctI GAATGC 1 cut(s) 130
PdmI GAANNNNTTC 3 cut(s) 20, 355, 1045
PfeI GAWTC 1 cut(s) 491
PfoI TCCNGGA 1 cut(s) 940
PkrI GCNGC 6 cut(s) 139, 329, 412, 598, 912, 1069
PpuMI RGGWCCY 1 cut(s) 944
Psp5II RGGWCCY 1 cut(s) 944
Psp6I CCWGG 3 cut(s) 145, 195, 279
PspFI CCCAGC 1 cut(s) 111
PspGI CCWGG 3 cut(s) 145, 195, 279
PspN4I GGNNCC 8 cut(s) 383, 600, 921, 939, 945, 946, 997, 1027
PspPI GGNCC 6 cut(s) 381, 539, 738, 938, 944, 995
PspPPI RGGWCCY 1 cut(s) 944
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 2 cut(s) 151, 806
RsaNI GTAC 2 cut(s) 150, 805
RseI CAYNNNNRTG 2 cut(s) 376, 438
SaqAI TTAA 8 cut(s) 30, 105, 131, 180, 468, 626, 825, 834
SatI GCNGC 6 cut(s) 138, 328, 411, 597, 911, 1068
Sau3AI GATC 1 cut(s) 453
Sau96I GGNCC 6 cut(s) 381, 539, 738, 938, 944, 995
ScaI AGTACT 1 cut(s) 806
ScrFI CCNGG 4 cut(s) 147, 197, 281, 942
SfaNI GCATC 2 cut(s) 839, 1024
SfcI CTRYAG 1 cut(s) 711
SinI GGWCC 5 cut(s) 381, 539, 938, 944, 995
SmiMI CAYNNNNRTG 2 cut(s) 376, 438
Sse9I AATT 2 cut(s) 311, 843
SsiI CCGC 5 cut(s) 87, 596, 630, 1068, 1074
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 4 cut(s) 145, 195, 279, 940
StyI CCWWGG 2 cut(s) 403, 531
TaaI ACNGT 2 cut(s) 71, 437
TaiI ACGT 1 cut(s) 564
TaqI TCGA 3 cut(s) 669, 847, 1006
TasI AATT 2 cut(s) 311, 843
TatI WGTACW 1 cut(s) 804
TauI GCSGC 2 cut(s) 599, 1070
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 8 cut(s) 30, 105, 131, 180, 468, 626, 825, 834
Tru9I TTAA 8 cut(s) 30, 105, 131, 180, 468, 626, 825, 834
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 4 cut(s) 137, 327, 410, 910
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 9 cut(s) 48, 304, 324, 366, 407, 899, 965, 972, 1034
TspGWI ACGGA 1 cut(s) 1038
TspRI CASTG 1 cut(s) 442
VpaK11BI GGWCC 5 cut(s) 381, 539, 938, 944, 995
XapI RAATTY 1 cut(s) 311
XmnI GAANNNNTTC 3 cut(s) 20, 355, 1045
XspI CTAG 1 cut(s) 422
ZrmI AGTACT 1 cut(s) 806
Zsp2I ATGCAT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.