Rroxscaffold_4G00285000

Glycerol-3-phosphate dehydrogenase NAD( )

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0010329
Physical Location & Seq
Reverse (-)
6472383 .. 6475229
2847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00285000.1

Sequence Viewer

Length: 1302 bp
ATGGCGGCGCTGCTAGAGCCACCGCCACCATTTCTAAACCCACTCCTTCCTCCGAGCTCAAACCCCACCCGCCCCCTTCCCCACAATCTCAAATTCAAAAGATTCAACCTTTCTAACAACCCCACCCTCCATTCCCAACCCACCACTTGCTGCGCCGCCGCTCCCCAACCCGAATTCCCCGACCCGACTTCCGAGCCGACCCGCGACCGCCGCCGAGCCGTCCGGCTGGCCTGGGAGAAGCTTGTCCGGTGGTCCCGGTCGTTGCGCTCCAAGAACAAGACAGATGTTCTTGAACGCACTAACAAGGTGGTGGTGCTCGGAGGTGGGTCTTTTGCGACGGCGATGGCGGCCCACGTTGCAAATAGAAAGGATCAGATGGAAGTTAACATGCTGGTGCGTGATGCTCAAGTTTGTCAGTCTATTAATGAGAACCATTATAATGGTAAGTACTTCCCAGAACATAAGCTACCGGAGAATGTGATTGCAACCACTGATGCCAAAGCTGCTTTGCTTAATGCTGACTATTGCCTCCATGCAGTCCCTGTGCAGTTCAGCGCATCGTTTCTTGAGGGAATTGCGGAATATGTATATCCAGAGTTGCCGTTCGTATCTGTTAGCAAGGGTTTGGAGCTCAATACATTGAGGACAATGTCTCAGATCATCCCCCAAGCATTGAAGAATCCTCGCCAGCCTTTCATTGCACTATCAGGGCCTTCTTTTGCTCTGGAGCTGATGAACAAATTACCAACAGCAATGGTGGTAGCGTCAAAAGACAAAAAATTGGCTAATGCTGTTCAGCAGTTACTAGCTTCTAGCTATCTAAGAATCAGCACTTCAAGTGATGTCACAGGGGTAGAAGTTACAGGTGCTCTCAAGAATGTGCTTGCAATAGCCGCAGGTATTGTGGATGGGATGAATCTTGGTAATAATTCTAAGGCAGCTCTTGTTTCACAGGGATGCTCAGAGATAAGATGGCTGGCAACTAAGATGGGTGCGAAGCCGACAACAATTACTGGTCTATCTGGAATTGGAGACATTATGCTTACATGTTTTGTAAACCTTTCTAGAAACAGAACAGTTGGGGTTCGTCTTGGATCAGGGGAGAAACTTGATGACATACTTGGTTCCATGAATCAGGTGGCGGAAGGTGTATCGACAGCAGGAGCAGTGATTGCGCTAGCGCAGAAATATAACGTCAAGATGCCAGTTTTGACTGCAGTAGCGCGGATTATTGACAATGAACTGACCCCCAAGAAAGCTGTTTTCGAGCTGATGAGCCTCCCTCAGGTTGAGGAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01110 ko04011 map00564 map01110 map04011
Pfam Domains
Protein Families
NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

433

Amino Acids

46.9

Weight (kDa)

9.27

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_Gly3P_dh_N PF01210 102 - 261 3.9e-40 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_Gly3P_dh_C PF07479 281 - 421 8.8e-52 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
GPD_NAD_C_bact PF20618 341 - 407 7.1e-22 Bacterial GPD, NAD-dependent C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
Acc36I ACCTGC 1 cut(s) 887
AccBSI CCGCTC 1 cut(s) 161
AccII CGCG 2 cut(s) 204, 1225
AclWI GGATC 2 cut(s) 378, 1102
AcsI RAATTY 2 cut(s) 92, 173
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 1 cut(s) 1285
AflIII ACRYGT 1 cut(s) 1046
AgsI TTSAA 5 cut(s) 97, 106, 293, 676, 837
AjnI CCWGG 1 cut(s) 230
Alw21I GWGCWC 4 cut(s) 59, 318, 633, 871
Alw26I GTCTC 2 cut(s) 657, 1026
AlwI GGATC 2 cut(s) 378, 1102
AlwNI CAGNNNCTG 1 cut(s) 542
AoxI GGCC 3 cut(s) 228, 348, 710
ApeKI GCWGC 4 cut(s) 10, 150, 503, 938
ApoI RAATTY 2 cut(s) 92, 173
AseI ATTAAT 1 cut(s) 423
AspLEI GCGC 7 cut(s) 10, 155, 267, 557, 1177, 1183, 1225
AspS9I GGNCC 3 cut(s) 252, 349, 710
AsuC2I CCSGG 1 cut(s) 256
AsuNHI GCTAGC 1 cut(s) 1177
AvaII GGWCC 1 cut(s) 252
AxyI CCTNAGG 1 cut(s) 1284
BanII GRGCYC 2 cut(s) 59, 633
Bbv12I GWGCWC 4 cut(s) 59, 318, 633, 871
BbvI GCAGC 3 cut(s) 137, 490, 950
BccI CCATC 5 cut(s) 337, 370, 902, 966, 982
BceAI ACGGC 3 cut(s) 203, 354, 586
BciT130I CCWGG 1 cut(s) 232
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 657, 1026
BfaI CTAG 5 cut(s) 14, 806, 813, 1065, 1178
BfmI CTRYAG 1 cut(s) 1215
BfoI RGCGCY 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 887
BmcAI AGTACT 1 cut(s) 449
Bme1390I CCNGG 2 cut(s) 232, 256
Bme18I GGWCC 1 cut(s) 252
BmgT120I GGNCC 3 cut(s) 252, 349, 710
BmiI GGNNCC 2 cut(s) 254, 1126
BmrFI CCNGG 2 cut(s) 232, 256
BmsI GCATC 5 cut(s) 391, 484, 566, 947, 1191
BmtI GCTAGC 1 cut(s) 1181
BplI GAGNNNNNCTC 2 cut(s) 1267, 1299
BpmI CTGGAG 1 cut(s) 746
BpuEI CTTGAG 3 cut(s) 390, 587, 857
BpuMI CCSGG 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 231
BsaWI WCCGGW 2 cut(s) 246, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 1285
Bse1I ACTGG 2 cut(s) 1018, 1205
Bse21I CCTNAGG 1 cut(s) 1284
Bse3DI GCAATG 2 cut(s) 696, 759
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 4 cut(s) 660, 913, 918, 962
BseLI CCNNNNNNNGG 1 cut(s) 1285
BseMI GCAATG 2 cut(s) 696, 759
BseMII CTCAG 3 cut(s) 668, 975, 1298
BseNI ACTGG 2 cut(s) 1018, 1205
BseXI GCAGC 3 cut(s) 137, 490, 950
BsgI GTGCAG 1 cut(s) 566
Bsh1236I CGCG 2 cut(s) 204, 1225
Bsh1285I CGRYCG 2 cut(s) 208, 260
BshFI GGCC 3 cut(s) 230, 350, 712
BsiEI CGRYCG 2 cut(s) 208, 260
BsiHKAI GWGCWC 4 cut(s) 59, 318, 633, 871
BsiSI CCGG 4 cut(s) 223, 247, 256, 470
BslFI GGGAC 2 cut(s) 238, 524
BslI CCNNNNNNNGG 1 cut(s) 1285
BsmAI GTCTC 2 cut(s) 657, 1026
BsmFI GGGAC 2 cut(s) 238, 524
BsnI GGCC 3 cut(s) 230, 350, 712
Bsp1286I GDGCHC 4 cut(s) 59, 318, 633, 871
Bsp143I GATC 3 cut(s) 370, 657, 1094
BspANI GGCC 3 cut(s) 230, 350, 712
BspCNI CTCAG 3 cut(s) 667, 974, 1297
BspFNI CGCG 2 cut(s) 204, 1225
BspLI GGNNCC 2 cut(s) 254, 1126
BspMAI CTGCAG 1 cut(s) 1219
BspMI ACCTGC 1 cut(s) 887
BspOI GCTAGC 1 cut(s) 1181
BspPI GGATC 2 cut(s) 378, 1102
BsrBI CCGCTC 1 cut(s) 161
BsrDI GCAATG 2 cut(s) 696, 759
BsrI ACTGG 2 cut(s) 1018, 1205
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 3 cut(s) 370, 657, 1094
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 1078
BstAPI GCANNNNNTGC 1 cut(s) 1172
BstC8I GCNNGC 5 cut(s) 228, 689, 885, 978, 1179
BstDEI CTNAG 6 cut(s) 654, 821, 933, 961, 984, 1284
BstENI CCTNNNNNAGG 1 cut(s) 1283
BstF5I GGATG 4 cut(s) 660, 913, 918, 962
BstFNI CGCG 2 cut(s) 204, 1225
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 7 cut(s) 10, 155, 267, 557, 1177, 1183, 1225
BstKTI GATC 3 cut(s) 373, 660, 1097
BstMAI GTCTC 2 cut(s) 657, 1026
BstMBI GATC 3 cut(s) 370, 657, 1094
BstMCI CGRYCG 2 cut(s) 208, 260
BstMWI GCNNNNNNNGC 7 cut(s) 16, 210, 347, 356, 503, 893, 1172
BstNI CCWGG 1 cut(s) 232
BstNSI RCATGY 2 cut(s) 391, 1050
BstSCI CCNGG 2 cut(s) 230, 254
BstSFI CTRYAG 1 cut(s) 1215
BstUI CGCG 2 cut(s) 204, 1225
BstV1I GCAGC 3 cut(s) 137, 490, 950
BstXI CCANNNNNNTGG 1 cut(s) 440
Bsu36I CCTNAGG 1 cut(s) 1284
BsuRI GGCC 3 cut(s) 230, 350, 712
BtgZI GCGATG 1 cut(s) 356
BtsCI GGATG 4 cut(s) 660, 913, 918, 962
BtsI GCAGTG 1 cut(s) 1173
BtsIMutI CAGTG 2 cut(s) 489, 1173
BveI ACCTGC 1 cut(s) 887
Cac8I GCNNGC 5 cut(s) 228, 689, 885, 978, 1179
CaiI CAGNNNCTG 1 cut(s) 542
CfoI GCGC 7 cut(s) 10, 155, 267, 557, 1177, 1183, 1225
Cfr13I GGNCC 3 cut(s) 252, 349, 710
CseI GACGC 1 cut(s) 753
Csp6I GTAC 1 cut(s) 448
CviAII CATG 4 cut(s) 388, 533, 1047, 1129
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 6 cut(s) 654, 821, 933, 961, 984, 1284
DpnI GATC 3 cut(s) 372, 659, 1096
DpnII GATC 3 cut(s) 370, 657, 1094
EciI GGCGGA 1 cut(s) 1157
Ecl136II GAGCTC 2 cut(s) 57, 631
Eco24I GRGCYC 2 cut(s) 59, 633
Eco47I GGWCC 1 cut(s) 252
Eco53kI GAGCTC 2 cut(s) 57, 631
Eco81I CCTNAGG 1 cut(s) 1284
EcoICRI GAGCTC 2 cut(s) 57, 631
EcoNI CCTNNNNNAGG 1 cut(s) 1283
EcoO109I RGGNCCY 1 cut(s) 710
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 230
EcoT38I GRGCYC 2 cut(s) 59, 633
FaeI CATG 4 cut(s) 391, 536, 1050, 1132
FaqI GGGAC 2 cut(s) 238, 524
FatI CATG 4 cut(s) 387, 532, 1046, 1128
FauI CCCGC 2 cut(s) 77, 209
FokI GGATG 4 cut(s) 647, 920, 925, 969
FriOI GRGCYC 2 cut(s) 59, 633
FspBI CTAG 5 cut(s) 14, 806, 813, 1065, 1178
GlaI GCGC 7 cut(s) 9, 154, 266, 556, 1176, 1182, 1224
GsuI CTGGAG 1 cut(s) 746
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 3 cut(s) 230, 350, 712
HapII CCGG 4 cut(s) 223, 247, 256, 470
HgaI GACGC 1 cut(s) 753
HhaI GCGC 7 cut(s) 10, 155, 267, 557, 1177, 1183, 1225
Hin1II CATG 4 cut(s) 391, 536, 1050, 1132
Hin6I GCGC 7 cut(s) 8, 153, 265, 555, 1175, 1181, 1223
HinP1I GCGC 7 cut(s) 8, 153, 265, 555, 1175, 1181, 1223
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 5 cut(s) 102, 679, 825, 916, 1132
HpaI GTTAAC 1 cut(s) 385
HpaII CCGG 4 cut(s) 223, 247, 256, 470
Hpy166II GTNNAC 2 cut(s) 385, 1057
Hpy188I TCNGA 7 cut(s) 54, 193, 320, 375, 657, 964, 1301
Hpy188III TCNNGA 8 cut(s) 290, 566, 593, 725, 874, 1023, 1065, 1198
Hpy8I GTNNAC 2 cut(s) 385, 1057
Hpy99I CGWCG 1 cut(s) 340
HpyAV CCTTC 4 cut(s) 56, 86, 723, 1139
HpyCH4III ACNGT 1 cut(s) 1078
HpyCH4IV ACGT 2 cut(s) 354, 1194
HpyCH4V TGCA 7 cut(s) 359, 485, 536, 547, 701, 887, 1217
HpyF10VI GCNNNNNNNGC 7 cut(s) 16, 210, 347, 356, 503, 893, 1172
HpyF3I CTNAG 6 cut(s) 654, 821, 933, 961, 984, 1284
HpySE526I ACGT 2 cut(s) 354, 1194
Hsp92II CATG 4 cut(s) 391, 536, 1050, 1132
HspAI GCGC 7 cut(s) 8, 153, 265, 555, 1175, 1181, 1223
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 3 cut(s) 370, 657, 1094
LmnI GCTCC 5 cut(s) 166, 272, 628, 727, 1163
Lsp1109I GCAGC 3 cut(s) 137, 490, 950
LweI GCATC 5 cut(s) 391, 484, 566, 947, 1191
MaeI CTAG 5 cut(s) 14, 806, 813, 1065, 1178
MaeII ACGT 2 cut(s) 354, 1194
MaeIII GTNAC 3 cut(s) 801, 844, 859
MalI GATC 3 cut(s) 372, 659, 1096
MbiI CCGCTC 1 cut(s) 161
MboI GATC 3 cut(s) 370, 657, 1094
MboII GAAGA 1 cut(s) 688
MhlI GDGCHC 4 cut(s) 59, 318, 633, 871
MluCI AATT 8 cut(s) 92, 173, 573, 740, 779, 928, 1008, 1026
MseI TTAA 3 cut(s) 384, 423, 513
MslI CAYNNNNRTG 3 cut(s) 392, 438, 955
MspI CCGG 4 cut(s) 223, 247, 256, 470
MspR9I CCNGG 2 cut(s) 232, 256
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 2 cut(s) 204, 1225
MwoI GCNNNNNNNGC 7 cut(s) 16, 210, 347, 356, 503, 893, 1172
NciI CCSGG 1 cut(s) 256
NdeII GATC 3 cut(s) 370, 657, 1094
NheI GCTAGC 1 cut(s) 1177
NlaIII CATG 4 cut(s) 391, 536, 1050, 1132
NlaIV GGNNCC 2 cut(s) 254, 1126
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 844
NspI RCATGY 2 cut(s) 391, 1050
PciI ACATGT 1 cut(s) 1046
PfeI GAWTC 5 cut(s) 102, 679, 825, 916, 1132
PflFI GACNNNGTC 1 cut(s) 649
PscI ACATGT 1 cut(s) 1046
PshBI ATTAAT 1 cut(s) 423
PsiI TTATAA 1 cut(s) 438
Psp124BI GAGCTC 2 cut(s) 59, 633
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 254, 1126
PspPI GGNCC 3 cut(s) 252, 349, 710
PsrI GAACNNNNNNTAC 2 cut(s) 450, 482
PstI CTGCAG 1 cut(s) 1219
PstNI CAGNNNCTG 1 cut(s) 542
PsyI GACNNNGTC 1 cut(s) 649
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
RseI CAYNNNNRTG 3 cut(s) 392, 438, 955
SacI GAGCTC 2 cut(s) 59, 633
SaqAI TTAA 3 cut(s) 384, 423, 513
Sau3AI GATC 3 cut(s) 370, 657, 1094
Sau96I GGNCC 3 cut(s) 252, 349, 710
ScaI AGTACT 1 cut(s) 449
ScrFI CCNGG 2 cut(s) 232, 256
SduI GDGCHC 4 cut(s) 59, 318, 633, 871
SfaNI GCATC 5 cut(s) 391, 484, 566, 947, 1191
SfcI CTRYAG 1 cut(s) 1215
SinI GGWCC 1 cut(s) 252
SmiMI CAYNNNNRTG 3 cut(s) 392, 438, 955
SmlI CTYRAG 3 cut(s) 405, 566, 872
SmoI CTYRAG 3 cut(s) 405, 566, 872
Sse9I AATT 8 cut(s) 92, 173, 573, 740, 779, 928, 1008, 1026
SspMI CTAG 5 cut(s) 14, 806, 813, 1065, 1178
SstI GAGCTC 2 cut(s) 59, 633
StyD4I CCNGG 2 cut(s) 230, 254
TaaI ACNGT 1 cut(s) 1078
TaiI ACGT 2 cut(s) 357, 1197
TaqI TCGA 2 cut(s) 1154, 1266
TasI AATT 8 cut(s) 92, 173, 573, 740, 779, 928, 1008, 1026
TatI WGTACW 1 cut(s) 447
TauI GCSGC 6 cut(s) 8, 158, 161, 213, 350, 896
TfiI GAWTC 5 cut(s) 102, 679, 825, 916, 1132
Tru1I TTAA 3 cut(s) 384, 423, 513
Tru9I TTAA 3 cut(s) 384, 423, 513
TscAI CASTG 2 cut(s) 496, 1173
TseFI GTSAC 1 cut(s) 844
TseI GCWGC 4 cut(s) 10, 150, 503, 938
Tsp45I GTSAC 1 cut(s) 844
TspDTI ATGAA 5 cut(s) 685, 749, 929, 1145, 1254
TspRI CASTG 2 cut(s) 496, 1173
Tth111I GACNNNGTC 1 cut(s) 649
VpaK11BI GGWCC 1 cut(s) 252
VspI ATTAAT 1 cut(s) 423
XagI CCTNNNNNAGG 1 cut(s) 1283
XapI RAATTY 2 cut(s) 92, 173
XbaI TCTAGA 1 cut(s) 1064
XceI RCATGY 2 cut(s) 391, 1050
XcmI CCANNNNNNNNNTGG 1 cut(s) 1135
XspI CTAG 5 cut(s) 14, 806, 813, 1065, 1178
ZrmI AGTACT 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.