Rmu_sc0031421.1_g000001

Glycerol-3-phosphate dehydrogenase NAD( )

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031421.1
OG0010329
Physical Location & Seq
Reverse (-)
1 .. 1871
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031421.1_g000001.1.cds

Sequence Viewer

Length: 975 bp
atggcggcgctgctagagccaccgccaccatttctaaacccactccttcctccgagctcaaaccccacccgcccccttccccacaatctcaaattcaaaagattcaacctttctaccaaccccaccctccattcccaacccaccacttgctgcgccgccgctccccgacccgaattccccgacccgacccgcgaccgccgccgagccgtccggctggcctgggagaagcttgtccggtggtcccggtcgttgcgctccaagaacaagacagatgttcttgaacgcactaacaaggtggtggtgctcggaggtgggtcttttgcgacggcgatggcggcccacgttgcagatagaaaggatcagatggaagttaacatgctggtgcgtgatgctcaagtttgtcagtctattaatgagaaccattataatggtaagtacttcccagaacataagctaccggagaatgtgattgcaaccactgatgccaaagctgctttgcttaatgctgactattgcctccatgcagtccctgtgcagttcagcgcatcgtttcttgagggaattgcggaatatgtatatccagagttgccgttcatatctgttagcaagggtttggagctcaatacattgaggacaatgtctcagatcatcccccaagcattgaagaatcctcgccagcctttcattgcgctatcagggccttcttttgctctggagctgatgaacaaattaccaacagcgatggtggtagcgtcaaaagacaaaaaattggctaatgcagttcagcagttactagcttctagctatctaagaatcagcacttcaagtgatgtcacaggggtagaagttacaggtgctctcaagaatgtgcttgcaatagccgcaggtattgtggatgggatgaatcttggtaataattctaaggccgctcttgtttcacagggatgctcagagataagatggctggcaactaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01110 ko04011 map00564 map01110 map04011
Pfam Domains
Protein Families
NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

325

Amino Acids

35.56

Weight (kDa)

9.51

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 426
Acc36I ACCTGC 1 cut(s) 875
AccBSI CCGCTC 2 cut(s) 161, 929
AccII CGCG 1 cut(s) 192
AclWI GGATC 1 cut(s) 366
AcsI RAATTY 2 cut(s) 92, 173
AfaI GTAC 1 cut(s) 437
AgsI TTSAA 5 cut(s) 97, 106, 281, 664, 825
AjnI CCWGG 1 cut(s) 218
AluBI AGCT 8 cut(s) 57, 229, 454, 491, 619, 718, 797, 804
AluI AGCT 8 cut(s) 57, 229, 454, 491, 619, 718, 797, 804
Alw21I GWGCWC 4 cut(s) 59, 306, 621, 859
Alw26I GTCTC 1 cut(s) 645
AlwI GGATC 1 cut(s) 366
AlwNI CAGNNNCTG 1 cut(s) 530
AoxI GGCC 4 cut(s) 216, 336, 698, 924
ApeKI GCWGC 3 cut(s) 10, 150, 491
ApoI RAATTY 2 cut(s) 92, 173
AseI ATTAAT 1 cut(s) 411
AspLEI GCGC 5 cut(s) 10, 155, 255, 545, 691
AspS9I GGNCC 3 cut(s) 240, 337, 698
AsuC2I CCSGG 1 cut(s) 244
AvaII GGWCC 1 cut(s) 240
BanII GRGCYC 2 cut(s) 59, 621
Bbv12I GWGCWC 4 cut(s) 59, 306, 621, 859
BbvI GCAGC 2 cut(s) 137, 478
BccI CCATC 5 cut(s) 325, 358, 736, 890, 954
BceAI ACGGC 3 cut(s) 191, 342, 574
BciT130I CCWGG 1 cut(s) 220
BcnI CCSGG 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 645
BfaI CTAG 3 cut(s) 14, 794, 801
BfoI RGCGCY 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 875
BmcAI AGTACT 1 cut(s) 437
Bme1390I CCNGG 2 cut(s) 220, 244
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 3 cut(s) 240, 337, 698
BmiI GGNNCC 1 cut(s) 242
BmrFI CCNGG 2 cut(s) 220, 244
BmsI GCATC 4 cut(s) 379, 472, 554, 935
BpmI CTGGAG 1 cut(s) 734
BpuEI CTTGAG 3 cut(s) 378, 575, 845
BpuMI CCSGG 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 2 cut(s) 234, 457
Bse3DI GCAATG 1 cut(s) 684
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 4 cut(s) 648, 901, 906, 950
BseMI GCAATG 1 cut(s) 684
BseMII CTCAG 2 cut(s) 656, 963
BseXI GCAGC 2 cut(s) 137, 478
BsgI GTGCAG 1 cut(s) 554
Bsh1236I CGCG 1 cut(s) 192
Bsh1285I CGRYCG 2 cut(s) 196, 248
BshFI GGCC 4 cut(s) 218, 338, 700, 926
BsiEI CGRYCG 2 cut(s) 196, 248
BsiHKAI GWGCWC 4 cut(s) 59, 306, 621, 859
BsiSI CCGG 4 cut(s) 211, 235, 244, 458
BslFI GGGAC 2 cut(s) 226, 512
BsmAI GTCTC 1 cut(s) 645
BsmFI GGGAC 2 cut(s) 226, 512
BsnI GGCC 4 cut(s) 218, 338, 700, 926
Bsp1286I GDGCHC 4 cut(s) 59, 306, 621, 859
Bsp143I GATC 2 cut(s) 358, 645
BspANI GGCC 4 cut(s) 218, 338, 700, 926
BspCNI CTCAG 2 cut(s) 655, 962
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 242
BspMI ACCTGC 1 cut(s) 875
BspPI GGATC 1 cut(s) 366
BsrBI CCGCTC 2 cut(s) 161, 929
BsrDI GCAATG 1 cut(s) 684
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 358, 645
Bst2UI CCWGG 1 cut(s) 220
BstC8I GCNNGC 4 cut(s) 216, 677, 873, 966
BstDEI CTNAG 5 cut(s) 642, 809, 921, 949, 972
BstF5I GGATG 4 cut(s) 648, 901, 906, 950
BstFNI CGCG 1 cut(s) 192
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 5 cut(s) 10, 155, 255, 545, 691
BstKTI GATC 2 cut(s) 361, 648
BstMAI GTCTC 1 cut(s) 645
BstMBI GATC 2 cut(s) 358, 645
BstMCI CGRYCG 2 cut(s) 196, 248
BstMWI GCNNNNNNNGC 7 cut(s) 16, 198, 335, 344, 491, 697, 881
BstNI CCWGG 1 cut(s) 220
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 218, 242
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 137, 478
BstXI CCANNNNNNTGG 1 cut(s) 428
BsuRI GGCC 4 cut(s) 218, 338, 700, 926
BtgZI GCGATG 2 cut(s) 344, 755
BtsCI GGATG 4 cut(s) 648, 901, 906, 950
BtsIMutI CAGTG 1 cut(s) 477
BveI ACCTGC 1 cut(s) 875
Cac8I GCNNGC 4 cut(s) 216, 677, 873, 966
CaiI CAGNNNCTG 1 cut(s) 530
CfoI GCGC 5 cut(s) 10, 155, 255, 545, 691
Cfr13I GGNCC 3 cut(s) 240, 337, 698
CseI GACGC 1 cut(s) 741
Csp6I GTAC 1 cut(s) 436
CviAII CATG 2 cut(s) 376, 521
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 5 cut(s) 642, 809, 921, 949, 972
DpnI GATC 2 cut(s) 360, 647
DpnII GATC 2 cut(s) 358, 645
Ecl136II GAGCTC 2 cut(s) 57, 619
Eco24I GRGCYC 2 cut(s) 59, 621
Eco47I GGWCC 1 cut(s) 240
Eco53kI GAGCTC 2 cut(s) 57, 619
EcoICRI GAGCTC 2 cut(s) 57, 619
EcoO109I RGGNCCY 1 cut(s) 698
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 218
EcoT38I GRGCYC 2 cut(s) 59, 621
FaeI CATG 2 cut(s) 379, 524
FaiI YATR 7 cut(s) 377, 426, 450, 522, 573, 577, 596
FaqI GGGAC 2 cut(s) 226, 512
FatI CATG 2 cut(s) 375, 520
FauI CCCGC 2 cut(s) 77, 197
FokI GGATG 4 cut(s) 635, 908, 913, 957
FriOI GRGCYC 2 cut(s) 59, 621
FspBI CTAG 3 cut(s) 14, 794, 801
GlaI GCGC 5 cut(s) 9, 154, 254, 544, 690
GsuI CTGGAG 1 cut(s) 734
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 4 cut(s) 218, 338, 700, 926
HapII CCGG 4 cut(s) 211, 235, 244, 458
HgaI GACGC 1 cut(s) 741
HhaI GCGC 5 cut(s) 10, 155, 255, 545, 691
Hin1II CATG 2 cut(s) 379, 524
Hin6I GCGC 5 cut(s) 8, 153, 253, 543, 689
HinP1I GCGC 5 cut(s) 8, 153, 253, 543, 689
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 4 cut(s) 102, 667, 813, 904
HpaI GTTAAC 1 cut(s) 373
HpaII CCGG 4 cut(s) 211, 235, 244, 458
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 5 cut(s) 54, 308, 363, 645, 952
Hpy188III TCNNGA 5 cut(s) 278, 554, 581, 713, 862
Hpy8I GTNNAC 1 cut(s) 373
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 3 cut(s) 56, 86, 711
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 6 cut(s) 347, 473, 524, 535, 779, 875
HpyF10VI GCNNNNNNNGC 7 cut(s) 16, 198, 335, 344, 491, 697, 881
HpyF3I CTNAG 5 cut(s) 642, 809, 921, 949, 972
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 2 cut(s) 379, 524
HspAI GCGC 5 cut(s) 8, 153, 253, 543, 689
KspAI GTTAAC 1 cut(s) 373
Kzo9I GATC 2 cut(s) 358, 645
LmnI GCTCC 4 cut(s) 166, 260, 616, 715
Lsp1109I GCAGC 2 cut(s) 137, 478
LweI GCATC 4 cut(s) 379, 472, 554, 935
MaeI CTAG 3 cut(s) 14, 794, 801
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 3 cut(s) 789, 832, 847
MalI GATC 2 cut(s) 360, 647
MbiI CCGCTC 2 cut(s) 161, 929
MboI GATC 2 cut(s) 358, 645
MboII GAAGA 1 cut(s) 676
MhlI GDGCHC 4 cut(s) 59, 306, 621, 859
MluCI AATT 6 cut(s) 92, 173, 561, 728, 767, 916
MnlI CCTC 7 cut(s) 60, 137, 302, 527, 550, 624, 681
MseI TTAA 3 cut(s) 372, 411, 501
MslI CAYNNNNRTG 3 cut(s) 380, 426, 943
MspI CCGG 4 cut(s) 211, 235, 244, 458
MspR9I CCNGG 2 cut(s) 220, 244
MvaI CCWGG 1 cut(s) 220
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 7 cut(s) 16, 198, 335, 344, 491, 697, 881
NciI CCSGG 1 cut(s) 244
NdeII GATC 2 cut(s) 358, 645
NlaIII CATG 2 cut(s) 379, 524
NlaIV GGNNCC 1 cut(s) 242
NmeAIII GCCGAG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 832
NspI RCATGY 1 cut(s) 379
PfeI GAWTC 4 cut(s) 102, 667, 813, 904
PflFI GACNNNGTC 1 cut(s) 637
PshBI ATTAAT 1 cut(s) 411
PsiI TTATAA 1 cut(s) 426
Psp124BI GAGCTC 2 cut(s) 59, 621
Psp6I CCWGG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 242
PspPI GGNCC 3 cut(s) 240, 337, 698
PsrI GAACNNNNNNTAC 2 cut(s) 438, 470
PstNI CAGNNNCTG 1 cut(s) 530
PsyI GACNNNGTC 1 cut(s) 637
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 3 cut(s) 380, 426, 943
SacI GAGCTC 2 cut(s) 59, 621
SaqAI TTAA 3 cut(s) 372, 411, 501
Sau3AI GATC 2 cut(s) 358, 645
Sau96I GGNCC 3 cut(s) 240, 337, 698
ScaI AGTACT 1 cut(s) 437
ScrFI CCNGG 2 cut(s) 220, 244
SduI GDGCHC 4 cut(s) 59, 306, 621, 859
SfaNI GCATC 4 cut(s) 379, 472, 554, 935
SinI GGWCC 1 cut(s) 240
SmiMI CAYNNNNRTG 3 cut(s) 380, 426, 943
SmlI CTYRAG 3 cut(s) 393, 554, 860
SmoI CTYRAG 3 cut(s) 393, 554, 860
Sse9I AATT 6 cut(s) 92, 173, 561, 728, 767, 916
SspMI CTAG 3 cut(s) 14, 794, 801
SstI GAGCTC 2 cut(s) 59, 621
StyD4I CCNGG 2 cut(s) 218, 242
TaiI ACGT 1 cut(s) 345
TasI AATT 6 cut(s) 92, 173, 561, 728, 767, 916
TatI WGTACW 1 cut(s) 435
TauI GCSGC 7 cut(s) 8, 158, 161, 201, 338, 884, 929
TfiI GAWTC 4 cut(s) 102, 667, 813, 904
Tru1I TTAA 3 cut(s) 372, 411, 501
Tru9I TTAA 3 cut(s) 372, 411, 501
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 1 cut(s) 832
TseI GCWGC 3 cut(s) 10, 150, 491
Tsp45I GTSAC 1 cut(s) 832
TspDTI ATGAA 4 cut(s) 583, 673, 737, 917
TspRI CASTG 1 cut(s) 484
Tth111I GACNNNGTC 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 240
VspI ATTAAT 1 cut(s) 411
XapI RAATTY 2 cut(s) 92, 173
XceI RCATGY 1 cut(s) 379
XspI CTAG 3 cut(s) 14, 794, 801
ZrmI AGTACT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.