Rorug01G0371400

Glycerol-3-phosphate dehydrogenase NAD( )

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0010329
Physical Location & Seq
Forward (+)
48515849 .. 48519234
3386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0371400.1

Sequence Viewer

Length: 1326 bp
ATGAGTGGTGGGCTTCGGACAAGCGTGAAGGGGTACATTATTGCACAACGGGTCACTGGGGCACTGGAAATAAACACAGTGCACGAGAATGAGAATGAGACGAGCATAAATGTAACTAGCAATTCCACAGCTGCTGACTCTGTGGATCATCCACCTCCGCTTTCAGTTCCAGAGACTTCAGCTTCATACGGGCTCAATATCTGTGATGGGAACATTCCTTGCTTTTCAATGTTGAGCTCTGCTGCAGAGTGTATGGCTTCTTATGGGACTACAACCGGTGCTGAGTGTCCTCCTCACGCTGTGCCTTCAACTCCTCGAACAGAGGGTGAAATCTTGCTGTTCCCCACCTTAAAGACCTTCTCCTTTAGTGAACTGAAAAGATCTACCAGGAAATTTCGTTCTGATAATATGTTGGGAGAAGGTAGTTTTGGTTGTGTCTTCAAGGGTTGGGTTGATGGGAATTCACTAACAGCTGCCAAGCCTGGTACTGGCATGGTCATTGCTGTGAAGAGGCTTAACCGACAAAGTCTTCAGGGTCACAAGGAATGGATGACAGAAATTAACTACCTTGGAAGGCTGCGTCATCCGAATCTTGTGAAATTGATTGGTTATTGCACTGAGGATGACGACCGCCTTTTGGTGTACGAATTTATGCCTTGTGGAAGCTTGAATAATCATCTATTTAGAAGGGGTTCTTACTCTCAATCACTGTCATGGACGCTTCGTATGAAGATTGCCTTTGGTGCTGCTAAGGTGCTAGCATTTCTTCACAGTGGTGAGGTAAAAGTGATCCATCGGAACATAAAAAGTTCTAACATCCTGCTGGATTCAACCTACAATGCGAAACTCTGTAGTTTTGGTCTGGCCAAGGATGGGCCAGAAGGTGATAGAAGTCATATCTCAACAAGGGTCGTGGGGACATCTGGATATGCAGCTCCTGAATATATGGCTACAGGTCATTTGACTGCCAAATGTGATGTATATGCGTTTGGAGTTGTTATGCTTGAAACGTTGTCTGGAAAACGAGCTATGGACAGGAACTCGCCAACTGGGAAATCCAATTTGGTTGAGTGGAGTGAATGGACCAATTCTGACATTGTCAGCAAACACAAAGTTCTCCAAATTATCGATGCTCGTGTTGAAGGACAGTACTCTGTTGCTAGAGCTCTTAAAGCAGCTGACCTTGCATTTCGCTGCCTATCAACAGATCCCAAACTTAGGCCAAACATGAATGATGTGGTAAAAGTTTTGGAGGAGCTTCAGGAATCTGGTGACATGTCTCATAACGAACCTCGCCACAATCCTCATGCCAGTTCAAGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01110 ko04011 map00564 map01110 map04011
Pfam Domains
Protein Families
NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

441

Amino Acids

48.23

Weight (kDa)

7.99

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 134 - 415 3.7e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 135 - 417 1.4e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 158, 631
AclI AACGTT 1 cut(s) 1010
AclWI GGATC 3 cut(s) 153, 784, 1202
AcoI YGGCCR 1 cut(s) 864
AcsI RAATTY 3 cut(s) 392, 460, 647
AcuI CTGAAG 3 cut(s) 162, 515, 1244
AdeI CACNNNGTG 1 cut(s) 301
AfaI GTAC 4 cut(s) 35, 487, 644, 1151
AfiI CCNNNNNNNGG 4 cut(s) 488, 637, 873, 1218
AflIII ACRYGT 1 cut(s) 1275
AgeI ACCGGT 1 cut(s) 275
AgsI TTSAA 8 cut(s) 228, 309, 442, 670, 831, 1007, 1142, 1317
AjnI CCWGG 2 cut(s) 386, 481
AjuI GAANNNNNNNTTGG 4 cut(s) 411, 443, 1046, 1078
AleI CACNNNNGTG 1 cut(s) 774
AloI GAACNNNNNNTCC 2 cut(s) 382, 414
Alw21I GWGCWC 3 cut(s) 84, 239, 1168
Alw26I GTCTC 3 cut(s) 92, 167, 1284
Alw44I GTGCAC 1 cut(s) 80
AlwI GGATC 3 cut(s) 153, 784, 1202
AlwNI CAGNNNCTG 2 cut(s) 134, 938
AoxI GGCC 3 cut(s) 864, 875, 1220
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 8 cut(s) 131, 242, 473, 577, 746, 932, 1175, 1194
ApoI RAATTY 3 cut(s) 392, 460, 647
AsiGI ACCGGT 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 691
AspS9I GGNCC 2 cut(s) 875, 1083
AsuHPI GGTGA 4 cut(s) 338, 788, 896, 1283
AsuNHI GCTAGC 1 cut(s) 757
AvaII GGWCC 1 cut(s) 1083
BaeGI GKGCMC 2 cut(s) 64, 84
BalI TGGCCA 1 cut(s) 866
BanII GRGCYC 3 cut(s) 195, 239, 1168
BauI CACGAG 2 cut(s) 83, 1134
BbsI GAAGAC 2 cut(s) 430, 521
Bbv12I GWGCWC 3 cut(s) 84, 239, 1168
BbvI GCAGC 8 cut(s) 118, 229, 460, 564, 733, 944, 1181, 1187
BccI CCATC 4 cut(s) 200, 449, 801, 866
BciT130I CCWGG 2 cut(s) 388, 483
BcoDI GTCTC 3 cut(s) 92, 167, 1284
BfaI CTAG 3 cut(s) 117, 758, 1161
BfmI CTRYAG 3 cut(s) 243, 850, 951
BglII AGATCT 1 cut(s) 380
BisI GCNGC 8 cut(s) 132, 243, 474, 578, 747, 933, 1176, 1195
BlsI GCNGC 8 cut(s) 133, 244, 475, 579, 748, 934, 1177, 1196
BmcAI AGTACT 1 cut(s) 1151
Bme1390I CCNGG 2 cut(s) 388, 483
Bme18I GGWCC 1 cut(s) 1083
BmgT120I GGNCC 2 cut(s) 875, 1083
BmrFI CCNGG 2 cut(s) 388, 483
BmrI ACTGGG 2 cut(s) 66, 1059
BmsI GCATC 1 cut(s) 1120
BmtI GCTAGC 1 cut(s) 761
BmuI ACTGGG 2 cut(s) 66, 1059
BpiI GAAGAC 2 cut(s) 430, 521
Bpu10I CCTNAGC 1 cut(s) 750
Bsa29I ATCGAT 1 cut(s) 1128
BsaJI CCNNGG 2 cut(s) 568, 867
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 4 cut(s) 488, 637, 873, 1218
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 5 cut(s) 61, 69, 493, 1054, 1311
Bse3DI GCAATG 1 cut(s) 498
BseBI CCWGG 2 cut(s) 388, 483
BseCI ATCGAT 1 cut(s) 1128
BseDI CCNNGG 2 cut(s) 568, 867
BseGI GGATG 6 cut(s) 148, 555, 583, 628, 816, 877
BseLI CCNNNNNNNGG 4 cut(s) 488, 637, 873, 1218
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 2 cut(s) 273, 609
BseNI ACTGG 5 cut(s) 61, 69, 493, 1054, 1311
BseRI GAGGAG 3 cut(s) 282, 303, 1268
BseSI GKGCMC 2 cut(s) 64, 84
BseXI GCAGC 8 cut(s) 118, 229, 460, 564, 733, 944, 1181, 1187
Bsh1285I CGRYCG 1 cut(s) 631
BshFI GGCC 3 cut(s) 866, 877, 1222
BshTI ACCGGT 1 cut(s) 275
BshVI ATCGAT 1 cut(s) 1128
BsiEI CGRYCG 1 cut(s) 631
BsiHKAI GWGCWC 3 cut(s) 84, 239, 1168
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 2 cut(s) 280, 931
BslI CCNNNNNNNGG 4 cut(s) 488, 637, 873, 1218
BsmAI GTCTC 3 cut(s) 92, 167, 1284
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 2 cut(s) 280, 931
BsnI GGCC 3 cut(s) 866, 877, 1222
Bsp1286I GDGCHC 5 cut(s) 64, 84, 195, 239, 1168
Bsp143I GATC 4 cut(s) 145, 380, 789, 1207
BspACI CCGC 2 cut(s) 158, 631
BspANI GGCC 3 cut(s) 866, 877, 1222
BspCNI CTCAG 2 cut(s) 274, 610
BspDI ATCGAT 1 cut(s) 1128
BspMAI CTGCAG 1 cut(s) 247
BspOI GCTAGC 1 cut(s) 761
BspPI GGATC 3 cut(s) 153, 784, 1202
BsrDI GCAATG 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 275
BsrI ACTGG 5 cut(s) 61, 69, 493, 1054, 1311
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 568, 867
BssMI GATC 4 cut(s) 145, 380, 789, 1207
BssSI CACGAG 2 cut(s) 83, 1134
BssT1I CCWWGG 2 cut(s) 568, 867
Bst2BI CACGAG 2 cut(s) 83, 1134
Bst2UI CCWGG 2 cut(s) 388, 483
Bst4CI ACNGT 4 cut(s) 79, 711, 773, 1149
Bst6I CTCTTC 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 759
BstDEI CTNAG 4 cut(s) 282, 618, 750, 1217
BstF5I GGATG 6 cut(s) 148, 555, 583, 628, 816, 877
BstKTI GATC 4 cut(s) 148, 383, 792, 1210
BstMAI GTCTC 3 cut(s) 92, 167, 1284
BstMBI GATC 4 cut(s) 145, 380, 789, 1207
BstMCI CGRYCG 1 cut(s) 631
BstMWI GCNNNNNNNGC 3 cut(s) 743, 1172, 1184
BstNI CCWGG 2 cut(s) 388, 483
BstNSI RCATGY 1 cut(s) 1279
BstSCI CCNGG 2 cut(s) 386, 481
BstSFI CTRYAG 3 cut(s) 243, 850, 951
BstSLI GKGCMC 2 cut(s) 64, 84
BstV1I GCAGC 8 cut(s) 118, 229, 460, 564, 733, 944, 1181, 1187
BstV2I GAAGAC 2 cut(s) 430, 521
BstX2I RGATCY 2 cut(s) 380, 1207
BstYI RGATCY 2 cut(s) 380, 1207
Bsu15I ATCGAT 1 cut(s) 1128
BsuRI GGCC 3 cut(s) 866, 877, 1222
BsuTUI ATCGAT 1 cut(s) 1128
BtsCI GGATG 6 cut(s) 148, 555, 583, 628, 816, 877
BtsIMutI CAGTG 6 cut(s) 54, 62, 84, 615, 707, 778
Cac8I GCNNGC 1 cut(s) 759
CaiI CAGNNNCTG 2 cut(s) 134, 938
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 875, 1083
ClaI ATCGAT 1 cut(s) 1128
CseI GACGC 2 cut(s) 569, 727
Csp6I GTAC 4 cut(s) 34, 486, 643, 1150
CspAI ACCGGT 1 cut(s) 275
CspCI CAANNNNNGTGG 2 cut(s) 894, 929
CviAII CATG 5 cut(s) 493, 714, 1228, 1276, 1307
CviQI GTAC 4 cut(s) 34, 486, 643, 1150
DdeI CTNAG 4 cut(s) 282, 618, 750, 1217
DpnI GATC 4 cut(s) 147, 382, 791, 1209
DpnII GATC 4 cut(s) 145, 380, 789, 1207
DraIII CACNNNGTG 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 864
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
Ecl136II GAGCTC 2 cut(s) 237, 1166
Eco130I CCWWGG 2 cut(s) 568, 867
Eco24I GRGCYC 3 cut(s) 195, 239, 1168
Eco47I GGWCC 1 cut(s) 1083
Eco53kI GAGCTC 2 cut(s) 237, 1166
Eco57I CTGAAG 3 cut(s) 162, 515, 1244
EcoICRI GAGCTC 2 cut(s) 237, 1166
EcoRI GAATTC 1 cut(s) 460
EcoRII CCWGG 2 cut(s) 386, 481
EcoT14I CCWWGG 2 cut(s) 568, 867
EcoT38I GRGCYC 3 cut(s) 195, 239, 1168
ErhI CCWWGG 2 cut(s) 568, 867
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 5 cut(s) 496, 717, 1231, 1279, 1310
FalI AAGNNNNNCTT 4 cut(s) 679, 711, 722, 754
FaqI GGGAC 2 cut(s) 280, 931
FatI CATG 5 cut(s) 492, 713, 1227, 1275, 1306
Fnu4HI GCNGC 8 cut(s) 132, 243, 474, 578, 747, 933, 1176, 1195
FokI GGATG 6 cut(s) 135, 562, 570, 635, 803, 884
FriOI GRGCYC 3 cut(s) 195, 239, 1168
Fsp4HI GCNGC 8 cut(s) 132, 243, 474, 578, 747, 933, 1176, 1195
FspBI CTAG 3 cut(s) 117, 758, 1161
GluI GCNGC 8 cut(s) 132, 243, 474, 578, 747, 933, 1176, 1195
HaeIII GGCC 3 cut(s) 866, 877, 1222
HapII CCGG 1 cut(s) 276
HgaI GACGC 2 cut(s) 569, 727
Hin1II CATG 5 cut(s) 496, 717, 1231, 1279, 1310
HindIII AAGCTT 1 cut(s) 664
HinfI GANTC 4 cut(s) 137, 589, 827, 1265
HpaII CCGG 1 cut(s) 276
HphI GGTGA 4 cut(s) 338, 788, 896, 1283
Hpy166II GTNNAC 3 cut(s) 82, 371, 643
Hpy188I TCNGA 5 cut(s) 18, 403, 588, 798, 1093
Hpy188III TCNNGA 5 cut(s) 170, 924, 938, 1017, 1262
Hpy8I GTNNAC 3 cut(s) 82, 371, 643
HpyAV CCTTC 8 cut(s) 22, 315, 367, 413, 567, 681, 875, 1136
HpyCH4III ACNGT 4 cut(s) 79, 711, 773, 1149
HpyCH4IV ACGT 1 cut(s) 1010
HpyCH4V TGCA 6 cut(s) 44, 82, 245, 615, 932, 1187
HpyF10VI GCNNNNNNNGC 3 cut(s) 743, 1172, 1184
HpyF3I CTNAG 4 cut(s) 282, 618, 750, 1217
HpySE526I ACGT 1 cut(s) 1010
Hsp92II CATG 5 cut(s) 496, 717, 1231, 1279, 1310
Kzo9I GATC 4 cut(s) 145, 380, 789, 1207
LmnI GCTCC 2 cut(s) 940, 1255
Lsp1109I GCAGC 8 cut(s) 118, 229, 460, 564, 733, 944, 1181, 1187
LweI GCATC 1 cut(s) 1120
MaeI CTAG 3 cut(s) 117, 758, 1161
MaeII ACGT 1 cut(s) 1010
MaeIII GTNAC 5 cut(s) 52, 112, 536, 1271, 1319
MalI GATC 4 cut(s) 147, 382, 791, 1209
MboI GATC 4 cut(s) 145, 380, 789, 1207
MboII GAAGA 5 cut(s) 430, 520, 521, 742, 758
MflI RGATCY 2 cut(s) 380, 1207
MhlI GDGCHC 5 cut(s) 64, 84, 195, 239, 1168
MlsI TGGCCA 1 cut(s) 866
MluCI AATT 9 cut(s) 121, 392, 460, 558, 599, 647, 1060, 1087, 1122
MluNI TGGCCA 1 cut(s) 866
MlyI GAGTC 1 cut(s) 131
Mox20I TGGCCA 1 cut(s) 866
MroXI GAANNNNTTC 1 cut(s) 691
MscI TGGCCA 1 cut(s) 866
MseI TTAA 4 cut(s) 350, 516, 561, 1170
MslI CAYNNNNRTG 4 cut(s) 87, 503, 712, 774
Msp20I TGGCCA 1 cut(s) 866
MspA1I CMGCKG 3 cut(s) 131, 473, 1178
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 2 cut(s) 388, 483
MvaI CCWGG 2 cut(s) 388, 483
MwoI GCNNNNNNNGC 3 cut(s) 743, 1172, 1184
NdeII GATC 4 cut(s) 145, 380, 789, 1207
NheI GCTAGC 1 cut(s) 757
NlaIII CATG 5 cut(s) 496, 717, 1231, 1279, 1310
NmuCI GTSAC 3 cut(s) 52, 536, 1271
NspI RCATGY 1 cut(s) 1279
OliI CACNNNNGTG 1 cut(s) 774
PciI ACATGT 1 cut(s) 1275
PdmI GAANNNNTTC 1 cut(s) 691
PfeI GAWTC 3 cut(s) 589, 827, 1265
PflFI GACNNNGTC 2 cut(s) 525, 1097
PinAI ACCGGT 1 cut(s) 275
PkrI GCNGC 8 cut(s) 133, 244, 475, 579, 748, 934, 1177, 1196
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PscI ACATGT 1 cut(s) 1275
Psp124BI GAGCTC 2 cut(s) 239, 1168
Psp1406I AACGTT 1 cut(s) 1010
Psp6I CCWGG 2 cut(s) 386, 481
PspGI CCWGG 2 cut(s) 386, 481
PspPI GGNCC 2 cut(s) 875, 1083
PstI CTGCAG 1 cut(s) 247
PstNI CAGNNNCTG 2 cut(s) 134, 938
PsuI RGATCY 2 cut(s) 380, 1207
PsyI GACNNNGTC 2 cut(s) 525, 1097
PvuII CAGCTG 3 cut(s) 131, 473, 1178
RsaI GTAC 4 cut(s) 35, 487, 644, 1151
RsaNI GTAC 4 cut(s) 34, 486, 643, 1150
RseI CAYNNNNRTG 4 cut(s) 87, 503, 712, 774
SacI GAGCTC 2 cut(s) 239, 1168
SaqAI TTAA 4 cut(s) 350, 516, 561, 1170
SatI GCNGC 8 cut(s) 132, 243, 474, 578, 747, 933, 1176, 1195
Sau3AI GATC 4 cut(s) 145, 380, 789, 1207
Sau96I GGNCC 2 cut(s) 875, 1083
ScaI AGTACT 1 cut(s) 1151
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 388, 483
SduI GDGCHC 5 cut(s) 64, 84, 195, 239, 1168
SfaNI GCATC 1 cut(s) 1120
SfcI CTRYAG 3 cut(s) 243, 850, 951
SinI GGWCC 1 cut(s) 1083
SmiMI CAYNNNNRTG 4 cut(s) 87, 503, 712, 774
Sse9I AATT 9 cut(s) 121, 392, 460, 558, 599, 647, 1060, 1087, 1122
SsiI CCGC 2 cut(s) 158, 631
SspMI CTAG 3 cut(s) 117, 758, 1161
SstI GAGCTC 2 cut(s) 239, 1168
StyD4I CCNGG 2 cut(s) 386, 481
StyI CCWWGG 2 cut(s) 568, 867
TaaI ACNGT 4 cut(s) 79, 711, 773, 1149
TaiI ACGT 1 cut(s) 1013
TaqI TCGA 2 cut(s) 316, 1128
TasI AATT 9 cut(s) 121, 392, 460, 558, 599, 647, 1060, 1087, 1122
TatI WGTACW 1 cut(s) 1149
TfiI GAWTC 3 cut(s) 589, 827, 1265
Tru1I TTAA 4 cut(s) 350, 516, 561, 1170
Tru9I TTAA 4 cut(s) 350, 516, 561, 1170
TscAI CASTG 6 cut(s) 61, 69, 84, 622, 714, 778
TseFI GTSAC 3 cut(s) 52, 536, 1271
TseI GCWGC 8 cut(s) 131, 242, 473, 577, 746, 932, 1175, 1194
Tsp45I GTSAC 3 cut(s) 52, 536, 1271
TspDTI ATGAA 3 cut(s) 174, 743, 1244
TspRI CASTG 6 cut(s) 61, 69, 84, 622, 714, 778
Tth111I GACNNNGTC 2 cut(s) 525, 1097
VneI GTGCAC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 1083
XapI RAATTY 3 cut(s) 392, 460, 647
XceI RCATGY 1 cut(s) 1279
XmnI GAANNNNTTC 1 cut(s) 691
XspI CTAG 3 cut(s) 117, 758, 1161
ZrmI AGTACT 1 cut(s) 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.