Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001755.1

Orthogroup ID

OG0010329

Physical Location & Seq

Genomic Coordinates Reverse (-)

17710 .. 19923

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001755.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ctggcctgggagaagcttgtccggtggtcccggtcgttgcgctccaagaacaagacagatgttcttgaacgcactaacaaggtggtggtgctcggaggtgggtcttttgcgacggcgatggcggcccacgttgcagatagaaaggatcagatggaagttaacatgctggtgcgtgatgctcaagtttgtcagtctattaatgagaaccattataatggtaagtacttcccagaacataagctaccggagaatgtgattgcaaccactgatgccaaagctgctttgcttaatgctgactattgcctccatgcagtccctgtgcagttcagcgcatcgtttcttgagggaattgcggaatatgtatatccagagttgccgttcatatctgttagcaagggtttggagctcaatacattgaggacaatgtctcagatcatcccccaagaattgaagaatcctcgccagcctttcattgcgctatcagggccttcttttgctctggagctgatgaacaaattaccaacagcgatggtggtagcgtcaaaagacaaaaaattggctaatgcagttcagcagttactagcttctagctatctaagaatcagcacttcaagtgatgtcacaggggtagaagttacaggtgctctcaagaatgtgcttgcaatagccgcaggtattgtggatgggatgaatcttggtaataattctaaggccgctcttgtttcacagggatgctcagagataagatggctggcaactaagatgggtgcgaagccgacaacaatcactggtctatctggaattggagatattatgcttacatgttttgtaaacctttctagaaacagaacagttggggttcgtcttggatcaggggagaaacttgatgacatacttggttccatgaatcaggtggcagaaggtgtatcgacagcaggagcagtgattgcgctagcgcagaaatataacgtcaagatgccagttttgactgcagtagctcggattattgacaatgaactgacccccaagaaagctgttttcgagctgatgagcctccctcaggttgaagaagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko01110 ko04011 map00564 map01110 map04011

Pfam Domains

Protein Families

NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

358

Amino Acids

38.63

Weight (kDa)

8.75

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40690 AT2G40690 AT2G40690
fragaria_vesca	FvH4_7g25990
malus_domestica	MD07G1234300.v1.1
prunus_persica	Prupe.2G264600_v2.0.a1 Prupe.2G264600_v2.0.a1
pyrus_communis	pycom07g21200
rosa_chinensis	RchiOBHm_Chr1g0372371
rosa_laevigata	RLG00000026903
rosa_multiflora	Rmu_sc0001755.1_g000006 Rmu_sc0031421.1_g000001 Rmu_sc0039763.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285000
rosa_rugosa	Rorug01G0371300 Rorug01G0371400
rosa_samantha	Rh1AG380000 Rh1BG343500 Rh1CG357000 Rh1DG374700
rosa_wichuraiana	Rw1G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	662
AccBSI	CCGCTC	1 cut(s)	716
AciI	CCGC	4 cut(s)	122, 353, 669, 714
AclWI	GGATC	2 cut(s)	153, 877
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	1060
AflIII	ACRYGT	1 cut(s)	821
AgsI	TTSAA	4 cut(s)	68, 451, 612, 1067
AjnI	CCWGG	1 cut(s)	5
Alw21I	GWGCWC	3 cut(s)	93, 408, 646
Alw26I	GTCTC	1 cut(s)	432
AlwI	GGATC	2 cut(s)	153, 877
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	4 cut(s)	3, 123, 485, 711
ApeKI	GCWGC	1 cut(s)	278
AseI	ATTAAT	1 cut(s)	198
AspLEI	GCGC	5 cut(s)	42, 332, 478, 952, 958
AspS9I	GGNCC	3 cut(s)	27, 124, 485
AsuC2I	CCSGG	1 cut(s)	31
AsuNHI	GCTAGC	1 cut(s)	952
AvaII	GGWCC	1 cut(s)	27
AxyI	CCTNAGG	1 cut(s)	1059
BanII	GRGCYC	1 cut(s)	408
Bbv12I	GWGCWC	3 cut(s)	93, 408, 646
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	6 cut(s)	112, 145, 523, 677, 741, 757
BceAI	ACGGC	2 cut(s)	129, 361
BciT130I	CCWGG	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	4 cut(s)	581, 588, 840, 953
BfmI	CTRYAG	1 cut(s)	990
BfuAI	ACCTGC	1 cut(s)	662
BisI	GCNGC	4 cut(s)	123, 279, 669, 714
BlsI	GCNGC	4 cut(s)	124, 280, 670, 715
BmcAI	AGTACT	1 cut(s)	224
Bme1390I	CCNGG	2 cut(s)	7, 31
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	3 cut(s)	27, 124, 485
BmiI	GGNNCC	2 cut(s)	29, 901
BmrFI	CCNGG	2 cut(s)	7, 31
BmsI	GCATC	5 cut(s)	166, 259, 341, 722, 966
BmtI	GCTAGC	1 cut(s)	956
BplI	GAGNNNNNCTC	2 cut(s)	1042, 1074
BpmI	CTGGAG	1 cut(s)	521
BpuEI	CTTGAG	3 cut(s)	165, 362, 632
BpuMI	CCSGG	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	6
BsaWI	WCCGGW	2 cut(s)	21, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	1060
Bse1I	ACTGG	2 cut(s)	793, 980
Bse21I	CCTNAGG	1 cut(s)	1059
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	4 cut(s)	435, 688, 693, 737
BseLI	CCNNNNNNNGG	1 cut(s)	1060
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	3 cut(s)	443, 750, 1073
BseNI	ACTGG	2 cut(s)	793, 980
BseXI	GCAGC	1 cut(s)	265
BsgI	GTGCAG	1 cut(s)	341
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	4 cut(s)	5, 125, 487, 713
BsiEI	CGRYCG	1 cut(s)	35
BsiHKAI	GWGCWC	3 cut(s)	93, 408, 646
BsiSI	CCGG	3 cut(s)	22, 31, 245
BslFI	GGGAC	2 cut(s)	13, 299
BslI	CCNNNNNNNGG	1 cut(s)	1060
BsmAI	GTCTC	1 cut(s)	432
BsmFI	GGGAC	2 cut(s)	13, 299
BsnI	GGCC	4 cut(s)	5, 125, 487, 713
Bsp1286I	GDGCHC	3 cut(s)	93, 408, 646
Bsp143I	GATC	3 cut(s)	145, 432, 869
BspACI	CCGC	4 cut(s)	122, 353, 669, 714
BspANI	GGCC	4 cut(s)	5, 125, 487, 713
BspCNI	CTCAG	3 cut(s)	442, 749, 1072
BspLI	GGNNCC	2 cut(s)	29, 901
BspMAI	CTGCAG	1 cut(s)	994
BspMI	ACCTGC	1 cut(s)	662
BspOI	GCTAGC	1 cut(s)	956
BspPI	GGATC	2 cut(s)	153, 877
BsrBI	CCGCTC	1 cut(s)	716
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	793, 980
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	3 cut(s)	145, 432, 869
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	853
BstAPI	GCANNNNNTGC	1 cut(s)	947
BstC8I	GCNNGC	4 cut(s)	464, 660, 753, 954
BstDEI	CTNAG	6 cut(s)	429, 596, 708, 736, 759, 1059
BstENI	CCTNNNNNAGG	1 cut(s)	1058
BstF5I	GGATG	4 cut(s)	435, 688, 693, 737
BstHHI	GCGC	5 cut(s)	42, 332, 478, 952, 958
BstKTI	GATC	3 cut(s)	148, 435, 872
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	3 cut(s)	145, 432, 869
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	6 cut(s)	122, 131, 278, 484, 668, 947
BstNI	CCWGG	1 cut(s)	7
BstNSI	RCATGY	2 cut(s)	166, 825
BstSCI	CCNGG	2 cut(s)	5, 29
BstSFI	CTRYAG	1 cut(s)	990
BstV1I	GCAGC	1 cut(s)	265
BstXI	CCANNNNNNTGG	1 cut(s)	215
Bsu36I	CCTNAGG	1 cut(s)	1059
BsuRI	GGCC	4 cut(s)	5, 125, 487, 713
BtgZI	GCGATG	2 cut(s)	131, 542
BtsCI	GGATG	4 cut(s)	435, 688, 693, 737
BtsI	GCAGTG	1 cut(s)	948
BtsIMutI	CAGTG	3 cut(s)	264, 786, 948
BveI	ACCTGC	1 cut(s)	662
Cac8I	GCNNGC	4 cut(s)	464, 660, 753, 954
CaiI	CAGNNNCTG	1 cut(s)	317
CfoI	GCGC	5 cut(s)	42, 332, 478, 952, 958
Cfr13I	GGNCC	3 cut(s)	27, 124, 485
CseI	GACGC	1 cut(s)	528
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	4 cut(s)	163, 308, 822, 904
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	6 cut(s)	429, 596, 708, 736, 759, 1059
DpnI	GATC	3 cut(s)	147, 434, 871
DpnII	GATC	3 cut(s)	145, 432, 869
Ecl136II	GAGCTC	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	406
Eco81I	CCTNAGG	1 cut(s)	1059
EcoICRI	GAGCTC	1 cut(s)	406
EcoNI	CCTNNNNNAGG	1 cut(s)	1058
EcoO109I	RGGNCCY	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	408
FaeI	CATG	4 cut(s)	166, 311, 825, 907
FaqI	GGGAC	2 cut(s)	13, 299
FatI	CATG	4 cut(s)	162, 307, 821, 903
Fnu4HI	GCNGC	4 cut(s)	123, 279, 669, 714
FokI	GGATG	4 cut(s)	422, 695, 700, 744
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	4 cut(s)	123, 279, 669, 714
FspBI	CTAG	4 cut(s)	581, 588, 840, 953
GlaI	GCGC	5 cut(s)	41, 331, 477, 951, 957
GluI	GCNGC	4 cut(s)	123, 279, 669, 714
GsuI	CTGGAG	1 cut(s)	521
HaeIII	GGCC	4 cut(s)	5, 125, 487, 713
HapII	CCGG	3 cut(s)	22, 31, 245
HgaI	GACGC	1 cut(s)	528
HhaI	GCGC	5 cut(s)	42, 332, 478, 952, 958
Hin1II	CATG	4 cut(s)	166, 311, 825, 907
Hin6I	GCGC	5 cut(s)	40, 330, 476, 950, 956
HinP1I	GCGC	5 cut(s)	40, 330, 476, 950, 956
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	4 cut(s)	454, 600, 691, 907
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	3 cut(s)	22, 31, 245
Hpy166II	GTNNAC	2 cut(s)	160, 832
Hpy188I	TCNGA	6 cut(s)	95, 150, 432, 739, 1002, 1076
Hpy188III	TCNNGA	8 cut(s)	65, 341, 368, 500, 649, 798, 840, 973
Hpy8I	GTNNAC	2 cut(s)	160, 832
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	2 cut(s)	498, 914
HpyCH4III	ACNGT	1 cut(s)	853
HpyCH4IV	ACGT	2 cut(s)	129, 969
HpyCH4V	TGCA	7 cut(s)	134, 260, 311, 322, 566, 662, 992
HpyF10VI	GCNNNNNNNGC	6 cut(s)	122, 131, 278, 484, 668, 947
HpyF3I	CTNAG	6 cut(s)	429, 596, 708, 736, 759, 1059
HpySE526I	ACGT	2 cut(s)	129, 969
Hsp92II	CATG	4 cut(s)	166, 311, 825, 907
HspAI	GCGC	5 cut(s)	40, 330, 476, 950, 956
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	145, 432, 869
LmnI	GCTCC	4 cut(s)	47, 403, 502, 938
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	5 cut(s)	166, 259, 341, 722, 966
MaeI	CTAG	4 cut(s)	581, 588, 840, 953
MaeII	ACGT	2 cut(s)	129, 969
MaeIII	GTNAC	3 cut(s)	576, 619, 634
MalI	GATC	3 cut(s)	147, 434, 871
MbiI	CCGCTC	1 cut(s)	716
MboI	GATC	3 cut(s)	145, 432, 869
MboII	GAAGA	1 cut(s)	463
MhlI	GDGCHC	3 cut(s)	93, 408, 646
MluCI	AATT	6 cut(s)	348, 446, 515, 554, 703, 801
MnlI	CCTC	7 cut(s)	89, 314, 337, 411, 468, 1064, 1068
MseI	TTAA	3 cut(s)	159, 198, 288
MslI	CAYNNNNRTG	3 cut(s)	167, 213, 730
MspI	CCGG	3 cut(s)	22, 31, 245
MspR9I	CCNGG	2 cut(s)	7, 31
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	6 cut(s)	122, 131, 278, 484, 668, 947
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	3 cut(s)	145, 432, 869
NheI	GCTAGC	1 cut(s)	952
NlaIII	CATG	4 cut(s)	166, 311, 825, 907
NlaIV	GGNNCC	2 cut(s)	29, 901
NmuCI	GTSAC	1 cut(s)	619
NspI	RCATGY	2 cut(s)	166, 825
PciI	ACATGT	1 cut(s)	821
PfeI	GAWTC	4 cut(s)	454, 600, 691, 907
PflFI	GACNNNGTC	1 cut(s)	424
PkrI	GCNGC	4 cut(s)	124, 280, 670, 715
PscI	ACATGT	1 cut(s)	821
PshBI	ATTAAT	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	29, 901
PspPI	GGNCC	3 cut(s)	27, 124, 485
PsrI	GAACNNNNNNTAC	2 cut(s)	225, 257
PstI	CTGCAG	1 cut(s)	994
PstNI	CAGNNNCTG	1 cut(s)	317
PsyI	GACNNNGTC	1 cut(s)	424
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	3 cut(s)	167, 213, 730
SacI	GAGCTC	1 cut(s)	408
SaqAI	TTAA	3 cut(s)	159, 198, 288
SatI	GCNGC	4 cut(s)	123, 279, 669, 714
Sau3AI	GATC	3 cut(s)	145, 432, 869
Sau96I	GGNCC	3 cut(s)	27, 124, 485
ScaI	AGTACT	1 cut(s)	224
ScrFI	CCNGG	2 cut(s)	7, 31
SduI	GDGCHC	3 cut(s)	93, 408, 646
SfaNI	GCATC	5 cut(s)	166, 259, 341, 722, 966
SfcI	CTRYAG	1 cut(s)	990
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	3 cut(s)	167, 213, 730
SmlI	CTYRAG	3 cut(s)	180, 341, 647
SmoI	CTYRAG	3 cut(s)	180, 341, 647
Sse9I	AATT	6 cut(s)	348, 446, 515, 554, 703, 801
SsiI	CCGC	4 cut(s)	122, 353, 669, 714
SspMI	CTAG	4 cut(s)	581, 588, 840, 953
SstI	GAGCTC	1 cut(s)	408
StyD4I	CCNGG	2 cut(s)	5, 29
TaaI	ACNGT	1 cut(s)	853
TaiI	ACGT	2 cut(s)	132, 972
TaqI	TCGA	2 cut(s)	929, 1041
TasI	AATT	6 cut(s)	348, 446, 515, 554, 703, 801
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	3 cut(s)	125, 671, 716
TfiI	GAWTC	4 cut(s)	454, 600, 691, 907
Tru1I	TTAA	3 cut(s)	159, 198, 288
Tru9I	TTAA	3 cut(s)	159, 198, 288
TscAI	CASTG	3 cut(s)	271, 793, 948
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	6 cut(s)	370, 460, 524, 704, 920, 1029
TspRI	CASTG	3 cut(s)	271, 793, 948
Tth111I	GACNNNGTC	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	27
VspI	ATTAAT	1 cut(s)	198
XagI	CCTNNNNNAGG	1 cut(s)	1058
XbaI	TCTAGA	1 cut(s)	839
XceI	RCATGY	2 cut(s)	166, 825
XcmI	CCANNNNNNNNNTGG	1 cut(s)	910
XspI	CTAG	4 cut(s)	581, 588, 840, 953
ZrmI	AGTACT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.