Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039763.1

Orthogroup ID

OG0010329

Physical Location & Seq

Genomic Coordinates Forward (+)

1420 .. 1957

Gene Structure 538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039763.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atggcggcgctgctagagccaccgccaccatttctaaacccactctttcctccgagctcaaaccccacccgcccccttccccacaatctcaaattcaaaagattcaacctttctaccaaccccaccctccattcccaacccaccacttgctgcgccgccgctccccgacccgaattccccgacccgacccgcgaccgccgccgagccgtccggctggcctgggagaagcttgtccggtggtcccggtcgttgcgctccaagaacaagacagatgttcttgaacgcactaacaaggtggtggtgctcggaggtgggtcttttgcgacggcgatggcggcccacgttgcagatagaaaggatcagatggaagttaacatgctggtgcgtgatgctcaagtttgtcagtctattaatgagaaccattataatgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko01110 ko04011 map00564 map01110 map04011

Pfam Domains

Protein Families

NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

144

Amino Acids

16.22

Weight (kDa)

10.21

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40690 AT2G40690 AT2G40690
fragaria_vesca	FvH4_7g25990
malus_domestica	MD07G1234300.v1.1
prunus_persica	Prupe.2G264600_v2.0.a1 Prupe.2G264600_v2.0.a1
pyrus_communis	pycom07g21200
rosa_chinensis	RchiOBHm_Chr1g0372371
rosa_laevigata	RLG00000026903
rosa_multiflora	Rmu_sc0001755.1_g000006 Rmu_sc0031421.1_g000001 Rmu_sc0039763.1_g000002
rosa_roxburghii	Rroxscaffold_4G00285000
rosa_rugosa	Rorug01G0371300 Rorug01G0371400
rosa_samantha	Rh1AG380000 Rh1BG343500 Rh1CG357000 Rh1DG374700
rosa_wichuraiana	Rw1G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
AccBSI	CCGCTC	1 cut(s)	161
AccII	CGCG	1 cut(s)	192
AciI	CCGC	9 cut(s)	5, 23, 70, 156, 159, 190, 196, 199, 335
AclWI	GGATC	1 cut(s)	366
AcsI	RAATTY	2 cut(s)	92, 173
AgsI	TTSAA	3 cut(s)	97, 106, 281
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	2 cut(s)	57, 229
AluI	AGCT	2 cut(s)	57, 229
Alw21I	GWGCWC	2 cut(s)	59, 306
AlwI	GGATC	1 cut(s)	366
AoxI	GGCC	2 cut(s)	216, 336
ApeKI	GCWGC	2 cut(s)	10, 150
ApoI	RAATTY	2 cut(s)	92, 173
AseI	ATTAAT	1 cut(s)	411
AspLEI	GCGC	3 cut(s)	10, 155, 255
AspS9I	GGNCC	2 cut(s)	240, 337
AsuC2I	CCSGG	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	59
Bbv12I	GWGCWC	2 cut(s)	59, 306
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	2 cut(s)	325, 358
BceAI	ACGGC	2 cut(s)	191, 342
BciT130I	CCWGG	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	244
BfaI	CTAG	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	11
BisI	GCNGC	7 cut(s)	6, 11, 151, 156, 159, 199, 336
BlsI	GCNGC	7 cut(s)	7, 12, 152, 157, 160, 200, 337
Bme1390I	CCNGG	2 cut(s)	220, 244
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	240, 337
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	2 cut(s)	220, 244
BmsI	GCATC	1 cut(s)	379
BpuEI	CTTGAG	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	192
Bsh1285I	CGRYCG	2 cut(s)	196, 248
BshFI	GGCC	2 cut(s)	218, 338
BsiEI	CGRYCG	2 cut(s)	196, 248
BsiHKAI	GWGCWC	2 cut(s)	59, 306
BsiSI	CCGG	3 cut(s)	211, 235, 244
BslFI	GGGAC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	218, 338
Bsp1286I	GDGCHC	2 cut(s)	59, 306
Bsp143I	GATC	1 cut(s)	358
BspACI	CCGC	9 cut(s)	5, 23, 70, 156, 159, 190, 196, 199, 335
BspANI	GGCC	2 cut(s)	218, 338
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	366
BsrBI	CCGCTC	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	216
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	3 cut(s)	10, 155, 255
BstKTI	GATC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	358
BstMCI	CGRYCG	2 cut(s)	196, 248
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 198, 335, 344
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	218, 242
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	137
BstXI	CCANNNNNNTGG	1 cut(s)	428
BsuRI	GGCC	2 cut(s)	218, 338
BtgZI	GCGATG	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	3 cut(s)	10, 155, 255
Cfr13I	GGNCC	2 cut(s)	240, 337
CviAII	CATG	1 cut(s)	376
CviJI	RGCY	7 cut(s)	19, 57, 206, 214, 218, 229, 338
CviKI_1	RGCY	7 cut(s)	19, 57, 206, 214, 218, 229, 338
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Ecl136II	GAGCTC	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	1 cut(s)	379
FaiI	YATR	2 cut(s)	377, 426
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	1 cut(s)	375
FauI	CCCGC	2 cut(s)	77, 197
Fnu4HI	GCNGC	7 cut(s)	6, 11, 151, 156, 159, 199, 336
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	7 cut(s)	6, 11, 151, 156, 159, 199, 336
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	3 cut(s)	9, 154, 254
GluI	GCNGC	7 cut(s)	6, 11, 151, 156, 159, 199, 336
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	218, 338
HapII	CCGG	3 cut(s)	211, 235, 244
HhaI	GCGC	3 cut(s)	10, 155, 255
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	3 cut(s)	8, 153, 253
HinP1I	GCGC	3 cut(s)	8, 153, 253
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	1 cut(s)	102
HpaI	GTTAAC	1 cut(s)	373
HpaII	CCGG	3 cut(s)	211, 235, 244
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	3 cut(s)	54, 308, 363
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	328
HpyAV	CCTTC	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 198, 335, 344
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	3 cut(s)	8, 153, 253
KspAI	GTTAAC	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	2 cut(s)	166, 260
LpnPI	CCDG	7 cut(s)	200, 205, 224, 232, 248, 257, 365
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	342
MalI	GATC	1 cut(s)	360
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	1 cut(s)	358
MhlI	GDGCHC	2 cut(s)	59, 306
MluCI	AATT	2 cut(s)	92, 173
MnlI	CCTC	3 cut(s)	60, 137, 302
MseI	TTAA	2 cut(s)	372, 411
MslI	CAYNNNNRTG	2 cut(s)	380, 426
MspI	CCGG	3 cut(s)	211, 235, 244
MspR9I	CCNGG	2 cut(s)	220, 244
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	4 cut(s)	16, 198, 335, 344
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	1 cut(s)	242
NmeAIII	GCCGAG	1 cut(s)	227
NspI	RCATGY	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	102
PkrI	GCNGC	7 cut(s)	7, 12, 152, 157, 160, 200, 337
PshBI	ATTAAT	1 cut(s)	411
PsiI	TTATAA	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	2 cut(s)	240, 337
RseI	CAYNNNNRTG	2 cut(s)	380, 426
SacI	GAGCTC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	372, 411
SatI	GCNGC	7 cut(s)	6, 11, 151, 156, 159, 199, 336
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	2 cut(s)	240, 337
ScrFI	CCNGG	2 cut(s)	220, 244
SduI	GDGCHC	2 cut(s)	59, 306
SetI	ASST	6 cut(s)	59, 111, 231, 297, 313, 345
SfaNI	GCATC	1 cut(s)	379
SinI	GGWCC	1 cut(s)	240
SmiMI	CAYNNNNRTG	2 cut(s)	380, 426
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
Sse9I	AATT	2 cut(s)	92, 173
SsiI	CCGC	9 cut(s)	5, 23, 70, 156, 159, 190, 196, 199, 335
SspMI	CTAG	1 cut(s)	14
SstI	GAGCTC	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	218, 242
TaiI	ACGT	1 cut(s)	345
TasI	AATT	2 cut(s)	92, 173
TauI	GCSGC	5 cut(s)	8, 158, 161, 201, 338
TfiI	GAWTC	1 cut(s)	102
Tru1I	TTAA	2 cut(s)	372, 411
Tru9I	TTAA	2 cut(s)	372, 411
TseI	GCWGC	2 cut(s)	10, 150
VpaK11BI	GGWCC	1 cut(s)	240
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	2 cut(s)	92, 173
XceI	RCATGY	1 cut(s)	379
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.