superfamily protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g26130 FvH4_7g26130 FvH4_7g26130 FvH4_7g26130 FvH4_7g26130 |
| malus_domestica | MD08G1039700.v1.1 MD15G1034300.v1.1 |
| prunus_persica | Prupe.1G388400_v2.0.a1 |
| pyrus_communis | pycom08g03190 pycom15g03160 |
| rosa_chinensis | RchiOBHm_Chr1g0372571 |
| rosa_laevigata | RLG00000026890 |
| rosa_multiflora | Rmu_ssc0000419.1_g000012 |
| rosa_roxburghii | Rroxscaffold_4G00284840 |
| rosa_rugosa | Rorug01G0372800 |
| rosa_samantha | Rh1AG381400 Rh1BG344800 Rh1CG358200 Rh1DG376000 |
| rosa_wichuraiana | Rw1G033540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 474 |
| Acc36I | ACCTGC | 1 cut(s) | 474 |
| Acc65I | GGTACC | 1 cut(s) | 2346 |
| AccB1I | GGYRCC | 1 cut(s) | 2346 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1003 |
| AccI | GTMKAC | 1 cut(s) | 2080 |
| AciI | CCGC | 3 cut(s) | 504, 2344, 2411 |
| AclWI | GGATC | 4 cut(s) | 1144, 1431, 1733, 2105 |
| AcoI | YGGCCR | 2 cut(s) | 863, 1097 |
| AcsI | RAATTY | 5 cut(s) | 413, 583, 1683, 1890, 1980 |
| AcuI | CTGAAG | 7 cut(s) | 123, 408, 1359, 1495, 1830, 2538, 2674 |
| AfaI | GTAC | 8 cut(s) | 343, 458, 989, 1256, 1865, 2348, 2526, 2817 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 472, 1003, 1798, 1885, 2405, 2521 |
| AjnI | CCWGG | 3 cut(s) | 851, 2071, 2392 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 88, 120 |
| Alw21I | GWGCWC | 1 cut(s) | 2620 |
| AlwI | GGATC | 4 cut(s) | 1144, 1431, 1733, 2105 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1258, 1838 |
| AoxI | GGCC | 4 cut(s) | 863, 981, 1097, 2596 |
| ApoI | RAATTY | 5 cut(s) | 413, 583, 1683, 1890, 1980 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 404, 436, 2422, 2454 |
| AseI | ATTAAT | 1 cut(s) | 2307 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 136, 2684 |
| Asp718I | GGTACC | 1 cut(s) | 2346 |
| AspLEI | GCGC | 1 cut(s) | 1212 |
| AspS9I | GGNCC | 6 cut(s) | 981, 1058, 1789, 2396, 2438, 2597 |
| AsuC2I | CCSGG | 3 cut(s) | 979, 1127, 2187 |
| AsuHPI | GGTGA | 8 cut(s) | 455, 1240, 1408, 1605, 2042, 2114, 2225, 2504 |
| AsuII | TTCGAA | 1 cut(s) | 212 |
| AvaII | GGWCC | 4 cut(s) | 1058, 1789, 2396, 2438 |
| AxyI | CCTNAGG | 2 cut(s) | 1062, 1846 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2516, 2549 |
| BalI | TGGCCA | 1 cut(s) | 865 |
| BanI | GGYRCC | 1 cut(s) | 2346 |
| BanII | GRGCYC | 3 cut(s) | 1565, 1697, 2187 |
| BauI | CACGAG | 2 cut(s) | 785, 1781 |
| BbsI | GAAGAC | 2 cut(s) | 92, 414 |
| Bbv12I | GWGCWC | 1 cut(s) | 2620 |
| BccI | CCATC | 9 cut(s) | 194, 248, 802, 997, 1268, 1340, 1436, 2203, 2588 |
| BciT130I | CCWGG | 3 cut(s) | 853, 2073, 2394 |
| BciVI | GTATCC | 2 cut(s) | 417, 2579 |
| BclI | TGATCA | 7 cut(s) | 436, 781, 1167, 1576, 2104, 2251, 2299 |
| BcnI | CCSGG | 3 cut(s) | 979, 1127, 2187 |
| BfaI | CTAG | 5 cut(s) | 288, 648, 885, 1680, 2045 |
| BfmI | CTRYAG | 1 cut(s) | 2811 |
| BfuAI | ACCTGC | 1 cut(s) | 474 |
| BfuI | GTATCC | 2 cut(s) | 417, 2579 |
| BglII | AGATCT | 2 cut(s) | 278, 2623 |
| BlpI | GCTNAGC | 1 cut(s) | 1014 |
| BmcAI | AGTACT | 1 cut(s) | 989 |
| Bme1390I | CCNGG | 6 cut(s) | 853, 979, 1127, 2073, 2187, 2394 |
| Bme18I | GGWCC | 4 cut(s) | 1058, 1789, 2396, 2438 |
| BmgT120I | GGNCC | 6 cut(s) | 981, 1058, 1789, 2396, 2438, 2597 |
| BmiI | GGNNCC | 7 cut(s) | 243, 293, 982, 1059, 2274, 2348, 2599 |
| BmrFI | CCNGG | 6 cut(s) | 853, 979, 1127, 2073, 2187, 2394 |
| BmrI | ACTGGG | 4 cut(s) | 1064, 1224, 1235, 1923 |
| BmsI | GCATC | 7 cut(s) | 112, 200, 1148, 1297, 1350, 1747, 1825 |
| BmuI | ACTGGG | 4 cut(s) | 1064, 1224, 1235, 1923 |
| BpiI | GAAGAC | 2 cut(s) | 92, 414 |
| Bpu10I | CCTNAGC | 2 cut(s) | 170, 837 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1014 |
| Bpu14I | TTCGAA | 1 cut(s) | 212 |
| BpuMI | CCSGG | 3 cut(s) | 979, 1127, 2187 |
| BsaBI | GATNNNNATC | 3 cut(s) | 277, 1422, 2109 |
| BsaI | GGTCTC | 1 cut(s) | 210 |
| BsaJI | CCNNGG | 5 cut(s) | 483, 978, 1527, 2209, 2668 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 88, 118, 2229, 2259 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 472, 1003, 1798, 1885, 2405, 2521 |
| Bse21I | CCTNAGG | 2 cut(s) | 1062, 1846 |
| Bse8I | GATNNNNATC | 3 cut(s) | 277, 1422, 2109 |
| BseBI | CCWGG | 3 cut(s) | 853, 2073, 2394 |
| BseDI | CCNNGG | 5 cut(s) | 483, 978, 1527, 2209, 2668 |
| BseGI | GGATG | 7 cut(s) | 127, 813, 1008, 1163, 1279, 1447, 2806 |
| BseJI | GATNNNNATC | 3 cut(s) | 277, 1422, 2109 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 472, 1003, 1798, 1885, 2405, 2521 |
| BseRI | GAGGAG | 1 cut(s) | 2281 |
| BseX3I | CGGCCG | 1 cut(s) | 1097 |
| BseYI | CCCAGC | 1 cut(s) | 10 |
| BsgI | GTGCAG | 1 cut(s) | 2484 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1100, 2665 |
| BshFI | GGCC | 4 cut(s) | 865, 983, 1099, 2598 |
| BshNI | GGYRCC | 1 cut(s) | 2346 |
| BsiEI | CGRYCG | 2 cut(s) | 1100, 2665 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2620 |
| BsiSI | CCGG | 4 cut(s) | 978, 1100, 1126, 2187 |
| BslFI | GGGAC | 1 cut(s) | 1231 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 472, 1003, 1798, 1885, 2405, 2521 |
| BsmBI | CGTCTC | 1 cut(s) | 93 |
| BsmFI | GGGAC | 1 cut(s) | 1231 |
| BsmI | GAATGC | 1 cut(s) | 383 |
| BsnI | GGCC | 4 cut(s) | 865, 983, 1099, 2598 |
| Bso31I | GGTCTC | 1 cut(s) | 210 |
| Bsp119I | TTCGAA | 1 cut(s) | 212 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1565, 1697, 2187, 2620 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1014 |
| BspACI | CCGC | 3 cut(s) | 504, 2344, 2411 |
| BspANI | GGCC | 4 cut(s) | 865, 983, 1099, 2598 |
| BspHI | TCATGA | 1 cut(s) | 2107 |
| BspLI | GGNNCC | 7 cut(s) | 243, 293, 982, 1059, 2274, 2348, 2599 |
| BspMI | ACCTGC | 1 cut(s) | 474 |
| BspPI | GGATC | 4 cut(s) | 1144, 1431, 1733, 2105 |
| BspT104I | TTCGAA | 1 cut(s) | 212 |
| BspT107I | GGYRCC | 1 cut(s) | 2346 |
| BspTNI | GGTCTC | 1 cut(s) | 210 |
| BssECI | CCNNGG | 5 cut(s) | 483, 978, 1527, 2209, 2668 |
| BssSI | CACGAG | 2 cut(s) | 785, 1781 |
| BssT1I | CCWWGG | 3 cut(s) | 483, 2209, 2668 |
| Bst2BI | CACGAG | 2 cut(s) | 785, 1781 |
| Bst2UI | CCWGG | 3 cut(s) | 853, 2073, 2394 |
| Bst6I | CTCTTC | 3 cut(s) | 1493, 1809, 2091 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 332, 2471 |
| BstBI | TTCGAA | 1 cut(s) | 212 |
| BstC8I | GCNNGC | 4 cut(s) | 1365, 1450, 1655, 2648 |
| BstEII | GGTNACC | 1 cut(s) | 2388 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 470, 2403 |
| BstF5I | GGATG | 7 cut(s) | 127, 813, 1008, 1163, 1279, 1447, 2806 |
| BstHHI | GCGC | 1 cut(s) | 1212 |
| BstMCI | CGRYCG | 2 cut(s) | 1100, 2665 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 332, 818, 898, 1729, 2425, 2471, 2765 |
| BstNI | CCWGG | 3 cut(s) | 853, 2073, 2394 |
| BstNSI | RCATGY | 2 cut(s) | 543, 1034 |
| BstPI | GGTNACC | 1 cut(s) | 2388 |
| BstSCI | CCNGG | 6 cut(s) | 851, 977, 1125, 2071, 2185, 2392 |
| BstSFI | CTRYAG | 1 cut(s) | 2811 |
| BstV2I | GAAGAC | 2 cut(s) | 92, 414 |
| BstX2I | RGATCY | 4 cut(s) | 278, 1136, 1738, 2623 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1629 |
| BstYI | RGATCY | 4 cut(s) | 278, 1136, 1738, 2623 |
| BstZI | CGGCCG | 1 cut(s) | 1097 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1062, 1846 |
| BsuI | GTATCC | 2 cut(s) | 417, 2579 |
| BsuRI | GGCC | 4 cut(s) | 865, 983, 1099, 2598 |
| BtsCI | GGATG | 7 cut(s) | 127, 813, 1008, 1163, 1279, 1447, 2806 |
| BtsI | GCAGTG | 1 cut(s) | 2500 |
| BveI | ACCTGC | 1 cut(s) | 474 |
| Cac8I | GCNNGC | 4 cut(s) | 1365, 1450, 1655, 2648 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1258, 1838 |
| CciI | TCATGA | 1 cut(s) | 2107 |
| CfoI | GCGC | 1 cut(s) | 1212 |
| Cfr13I | GGNCC | 6 cut(s) | 981, 1058, 1789, 2396, 2438, 2597 |
| CseI | GACGC | 1 cut(s) | 1052 |
| CsiI | ACCWGGT | 1 cut(s) | 2392 |
| Csp6I | GTAC | 8 cut(s) | 342, 457, 988, 1255, 1864, 2347, 2525, 2816 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 310, 345 |
| CviQI | GTAC | 8 cut(s) | 342, 457, 988, 1255, 1864, 2347, 2525, 2816 |
| DraI | TTTAAA | 2 cut(s) | 724, 859 |
| EaeI | YGGCCR | 2 cut(s) | 863, 1097 |
| EagI | CGGCCG | 1 cut(s) | 1097 |
| Eam1104I | CTCTTC | 3 cut(s) | 1493, 1809, 2091 |
| EarI | CTCTTC | 3 cut(s) | 1493, 1809, 2091 |
| EclXI | CGGCCG | 1 cut(s) | 1097 |
| Eco130I | CCWWGG | 3 cut(s) | 483, 2209, 2668 |
| Eco24I | GRGCYC | 3 cut(s) | 1565, 1697, 2187 |
| Eco31I | GGTCTC | 1 cut(s) | 210 |
| Eco32I | GATATC | 2 cut(s) | 640, 2166 |
| Eco47I | GGWCC | 4 cut(s) | 1058, 1789, 2396, 2438 |
| Eco52I | CGGCCG | 1 cut(s) | 1097 |
| Eco57I | CTGAAG | 7 cut(s) | 123, 408, 1359, 1495, 1830, 2538, 2674 |
| Eco81I | CCTNAGG | 2 cut(s) | 1062, 1846 |
| Eco91I | GGTNACC | 1 cut(s) | 2388 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 470, 2403 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1058 |
| EcoO65I | GGTNACC | 1 cut(s) | 2388 |
| EcoRI | GAATTC | 1 cut(s) | 1683 |
| EcoRII | CCWGG | 3 cut(s) | 851, 2071, 2392 |
| EcoRV | GATATC | 2 cut(s) | 640, 2166 |
| EcoT14I | CCWWGG | 3 cut(s) | 483, 2209, 2668 |
| EcoT38I | GRGCYC | 3 cut(s) | 1565, 1697, 2187 |
| ErhI | CCWWGG | 3 cut(s) | 483, 2209, 2668 |
| Esp3I | CGTCTC | 1 cut(s) | 93 |
| FaqI | GGGAC | 1 cut(s) | 1231 |
| FauI | CCCGC | 1 cut(s) | 2404 |
| FbaI | TGATCA | 7 cut(s) | 436, 781, 1167, 1576, 2104, 2251, 2299 |
| FblI | GTMKAC | 1 cut(s) | 2080 |
| FokI | GGATG | 7 cut(s) | 134, 820, 1015, 1170, 1286, 1454, 2813 |
| FriOI | GRGCYC | 3 cut(s) | 1565, 1697, 2187 |
| FspBI | CTAG | 5 cut(s) | 288, 648, 885, 1680, 2045 |
| GlaI | GCGC | 1 cut(s) | 1211 |
| GsaI | CCCAGC | 1 cut(s) | 14 |
| HaeIII | GGCC | 4 cut(s) | 865, 983, 1099, 2598 |
| HapII | CCGG | 4 cut(s) | 978, 1100, 1126, 2187 |
| HgaI | GACGC | 1 cut(s) | 1052 |
| HhaI | GCGC | 1 cut(s) | 1212 |
| Hin6I | GCGC | 1 cut(s) | 1210 |
| HinP1I | GCGC | 1 cut(s) | 1210 |
| HincII | GTYRAC | 2 cut(s) | 771, 1315 |
| HindII | GTYRAC | 2 cut(s) | 771, 1315 |
| HindIII | AAGCTT | 1 cut(s) | 1655 |
| HpaII | CCGG | 4 cut(s) | 978, 1100, 1126, 2187 |
| HphI | GGTGA | 8 cut(s) | 455, 1240, 1408, 1605, 2042, 2114, 2225, 2504 |
| Hpy166II | GTNNAC | 7 cut(s) | 771, 1052, 1315, 1355, 1383, 1613, 2081 |
| Hpy8I | GTNNAC | 7 cut(s) | 771, 1052, 1315, 1355, 1383, 1613, 2081 |
| HpyAV | CCTTC | 8 cut(s) | 87, 147, 922, 2021, 2046, 2228, 2399, 2789 |
| HpyCH4IV | ACGT | 1 cut(s) | 2636 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 332, 818, 898, 1729, 2425, 2471, 2765 |
| HpySE526I | ACGT | 1 cut(s) | 2636 |
| HspAI | GCGC | 1 cut(s) | 1210 |
| KpnI | GGTACC | 1 cut(s) | 2350 |
| Ksp22I | TGATCA | 7 cut(s) | 436, 781, 1167, 1576, 2104, 2251, 2299 |
| LmnI | GCTCC | 6 cut(s) | 247, 297, 889, 1445, 2272, 2615 |
| LweI | GCATC | 7 cut(s) | 112, 200, 1148, 1297, 1350, 1747, 1825 |
| MabI | ACCWGGT | 1 cut(s) | 2392 |
| MaeI | CTAG | 5 cut(s) | 288, 648, 885, 1680, 2045 |
| MaeII | ACGT | 1 cut(s) | 2636 |
| MaeIII | GTNAC | 9 cut(s) | 461, 590, 973, 1776, 2030, 2365, 2373, 2388, 2704 |
| MfeI | CAATTG | 3 cut(s) | 152, 1024, 2356 |
| MflI | RGATCY | 4 cut(s) | 278, 1136, 1738, 2623 |
| MhlI | GDGCHC | 4 cut(s) | 1565, 1697, 2187, 2620 |
| MlsI | TGGCCA | 1 cut(s) | 865 |
| MluNI | TGGCCA | 1 cut(s) | 865 |
| MlyI | GAGTC | 5 cut(s) | 353, 1198, 1424, 1510, 1532 |
| MmeI | TCCRAC | 1 cut(s) | 2270 |
| Mox20I | TGGCCA | 1 cut(s) | 865 |
| MroXI | GAANNNNTTC | 2 cut(s) | 136, 2684 |
| MscI | TGGCCA | 1 cut(s) | 865 |
| MseI | TTAA | 9 cut(s) | 36, 723, 858, 1718, 1797, 1944, 2307, 2478, 2726 |
| MslI | CAYNNNNRTG | 2 cut(s) | 538, 1627 |
| Msp20I | TGGCCA | 1 cut(s) | 865 |
| MspA1I | CMGCKG | 2 cut(s) | 1763, 2468 |
| MspI | CCGG | 4 cut(s) | 978, 1100, 1126, 2187 |
| MspR9I | CCNGG | 6 cut(s) | 853, 979, 1127, 2073, 2187, 2394 |
| MunI | CAATTG | 3 cut(s) | 152, 1024, 2356 |
| Mva1269I | GAATGC | 1 cut(s) | 383 |
| MvaI | CCWGG | 3 cut(s) | 853, 2073, 2394 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 332, 818, 898, 1729, 2425, 2471, 2765 |
| NciI | CCSGG | 3 cut(s) | 979, 1127, 2187 |
| NlaIV | GGNNCC | 7 cut(s) | 243, 293, 982, 1059, 2274, 2348, 2599 |
| NmuCI | GTSAC | 3 cut(s) | 461, 1776, 2030 |
| NspI | RCATGY | 2 cut(s) | 543, 1034 |
| NspV | TTCGAA | 1 cut(s) | 212 |
| PagI | TCATGA | 1 cut(s) | 2107 |
| PaqCI | CACCTGC | 1 cut(s) | 474 |
| PctI | GAATGC | 1 cut(s) | 383 |
| PdmI | GAANNNNTTC | 2 cut(s) | 136, 2684 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1003 |
| PleI | GAGTC | 5 cut(s) | 353, 1197, 1424, 1509, 1531 |
| PpsI | GAGTC | 5 cut(s) | 353, 1197, 1424, 1509, 1531 |
| PpuMI | RGGWCCY | 1 cut(s) | 1058 |
| PshBI | ATTAAT | 1 cut(s) | 2307 |
| Psp5II | RGGWCCY | 1 cut(s) | 1058 |
| Psp6I | CCWGG | 3 cut(s) | 851, 2071, 2392 |
| PspEI | GGTNACC | 1 cut(s) | 2388 |
| PspFI | CCCAGC | 1 cut(s) | 10 |
| PspGI | CCWGG | 3 cut(s) | 851, 2071, 2392 |
| PspN4I | GGNNCC | 7 cut(s) | 243, 293, 982, 1059, 2274, 2348, 2599 |
| PspPI | GGNCC | 6 cut(s) | 981, 1058, 1789, 2396, 2438, 2597 |
| PspPPI | RGGWCCY | 1 cut(s) | 1058 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 945, 977 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1258, 1838 |
| PsuI | RGATCY | 4 cut(s) | 278, 1136, 1738, 2623 |
| PvuII | CAGCTG | 2 cut(s) | 1763, 2468 |
| RsaI | GTAC | 8 cut(s) | 343, 458, 989, 1256, 1865, 2348, 2526, 2817 |
| RsaNI | GTAC | 8 cut(s) | 342, 457, 988, 1255, 1864, 2347, 2525, 2816 |
| RseI | CAYNNNNRTG | 2 cut(s) | 538, 1627 |
| SaqAI | TTAA | 9 cut(s) | 36, 723, 858, 1718, 1797, 1944, 2307, 2478, 2726 |
| Sau96I | GGNCC | 6 cut(s) | 981, 1058, 1789, 2396, 2438, 2597 |
| ScaI | AGTACT | 1 cut(s) | 989 |
| SchI | GAGTC | 5 cut(s) | 353, 1198, 1424, 1510, 1532 |
| ScrFI | CCNGG | 6 cut(s) | 853, 979, 1127, 2073, 2187, 2394 |
| SduI | GDGCHC | 4 cut(s) | 1565, 1697, 2187, 2620 |
| SexAI | ACCWGGT | 1 cut(s) | 2392 |
| SfaNI | GCATC | 7 cut(s) | 112, 200, 1148, 1297, 1350, 1747, 1825 |
| SfcI | CTRYAG | 1 cut(s) | 2811 |
| SfuI | TTCGAA | 1 cut(s) | 212 |
| SinI | GGWCC | 4 cut(s) | 1058, 1789, 2396, 2438 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 538, 1627 |
| SsiI | CCGC | 3 cut(s) | 504, 2344, 2411 |
| SspMI | CTAG | 5 cut(s) | 288, 648, 885, 1680, 2045 |
| StyD4I | CCNGG | 6 cut(s) | 851, 977, 1125, 2071, 2185, 2392 |
| StyI | CCWWGG | 3 cut(s) | 483, 2209, 2668 |
| TaiI | ACGT | 1 cut(s) | 2639 |
| TaqI | TCGA | 2 cut(s) | 212, 350 |
| TatI | WGTACW | 3 cut(s) | 456, 987, 1863 |
| Tru1I | TTAA | 9 cut(s) | 36, 723, 858, 1718, 1797, 1944, 2307, 2478, 2726 |
| Tru9I | TTAA | 9 cut(s) | 36, 723, 858, 1718, 1797, 1944, 2307, 2478, 2726 |
| TseFI | GTSAC | 3 cut(s) | 461, 1776, 2030 |
| Tsp45I | GTSAC | 3 cut(s) | 461, 1776, 2030 |
| TspDTI | ATGAA | 9 cut(s) | 393, 1096, 1338, 1511, 1527, 1665, 1749, 2418, 2469 |
| TspGWI | ACGGA | 1 cut(s) | 1864 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1003 |
| VpaK11BI | GGWCC | 4 cut(s) | 1058, 1789, 2396, 2438 |
| VspI | ATTAAT | 1 cut(s) | 2307 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 470, 2403 |
| XapI | RAATTY | 5 cut(s) | 413, 583, 1683, 1890, 1980 |
| XbaI | TCTAGA | 1 cut(s) | 1679 |
| XceI | RCATGY | 2 cut(s) | 543, 1034 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 602, 1994 |
| XmiI | GTMKAC | 1 cut(s) | 2080 |
| XmnI | GAANNNNTTC | 2 cut(s) | 136, 2684 |
| XspI | CTAG | 5 cut(s) | 288, 648, 885, 1680, 2045 |
| ZrmI | AGTACT | 1 cut(s) | 989 |