superfamily protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g26130 FvH4_7g26130 FvH4_7g26130 FvH4_7g26130 FvH4_7g26130 |
| malus_domestica | MD08G1039700.v1.1 MD15G1034300.v1.1 |
| prunus_persica | Prupe.1G388400_v2.0.a1 |
| pyrus_communis | pycom08g03190 pycom15g03160 |
| rosa_chinensis | RchiOBHm_Chr1g0372571 |
| rosa_laevigata | RLG00000026890 |
| rosa_multiflora | Rmu_ssc0000419.1_g000012 |
| rosa_roxburghii | Rroxscaffold_4G00284840 |
| rosa_rugosa | Rorug01G0372800 |
| rosa_samantha | Rh1AG381400 Rh1BG344800 Rh1CG358200 Rh1DG376000 |
| rosa_wichuraiana | Rw1G033540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 2274 |
| AccI | GTMKAC | 1 cut(s) | 2355 |
| AciI | CCGC | 5 cut(s) | 102, 808, 1876, 2103, 2283 |
| AclWI | GGATC | 2 cut(s) | 1023, 1325 |
| AcoI | YGGCCR | 2 cut(s) | 461, 1488 |
| AcsI | RAATTY | 3 cut(s) | 181, 1395, 1590 |
| AcuI | CTGAAG | 5 cut(s) | 512, 1422, 1536, 1627, 2424 |
| AcyI | GRCGYC | 1 cut(s) | 2275 |
| AdeI | CACNNNGTG | 1 cut(s) | 1738 |
| AfaI | GTAC | 4 cut(s) | 5, 56, 854, 2433 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 43, 1390, 1786 |
| AflIII | ACRYGT | 2 cut(s) | 149, 2292 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1548 |
| AjnI | CCWGG | 2 cut(s) | 1792, 1999 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1207, 1239 |
| AleI | CACNNNNGTG | 1 cut(s) | 1216 |
| AluBI | AGCT | 8 cut(s) | 131, 332, 447, 475, 490, 1573, 1720, 2081 |
| AluI | AGCT | 8 cut(s) | 131, 332, 447, 475, 490, 1573, 1720, 2081 |
| Alw26I | GTCTC | 5 cut(s) | 209, 951, 998, 1180, 1622 |
| AlwI | GGATC | 2 cut(s) | 1023, 1325 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 856 |
| AoxI | GGCC | 5 cut(s) | 461, 1488, 1529, 1924, 2203 |
| ApeKI | GCWGC | 5 cut(s) | 1352, 2072, 2100, 2212, 2215 |
| ApoI | RAATTY | 3 cut(s) | 181, 1395, 1590 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 34 |
| AseI | ATTAAT | 1 cut(s) | 1962 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2294 |
| AspLEI | GCGC | 2 cut(s) | 412, 2277 |
| AspS9I | GGNCC | 4 cut(s) | 656, 1381, 2045, 2204 |
| AsuC2I | CCSGG | 2 cut(s) | 541, 646 |
| AsuHPI | GGTGA | 8 cut(s) | 53, 1000, 1649, 1721, 1832, 1865, 1966, 2111 |
| AsuII | TTCGAA | 3 cut(s) | 119, 1587, 2191 |
| AsuNHI | GCTAGC | 1 cut(s) | 328 |
| AvaII | GGWCC | 3 cut(s) | 656, 1381, 2045 |
| AxyI | CCTNAGG | 1 cut(s) | 1435 |
| BaeGI | GKGCMC | 1 cut(s) | 1312 |
| BalI | TGGCCA | 2 cut(s) | 463, 1490 |
| BanI | GGYRCC | 1 cut(s) | 2274 |
| BanII | GRGCYC | 3 cut(s) | 546, 1154, 1286 |
| BauI | CACGAG | 1 cut(s) | 2030 |
| BbsI | GAAGAC | 3 cut(s) | 12, 752, 1761 |
| BbvI | GCAGC | 5 cut(s) | 1339, 2059, 2112, 2224, 2227 |
| BccI | CCATC | 8 cut(s) | 400, 595, 866, 875, 1006, 1028, 1514, 2195 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2146, 2180 |
| BciT130I | CCWGG | 2 cut(s) | 1794, 2001 |
| BclI | TGATCA | 4 cut(s) | 379, 765, 1165, 1906 |
| BcnI | CCSGG | 2 cut(s) | 541, 646 |
| BcoDI | GTCTC | 5 cut(s) | 209, 951, 998, 1180, 1622 |
| BfaI | CTAG | 7 cut(s) | 246, 329, 483, 677, 1500, 1970, 2114 |
| BfmI | CTRYAG | 1 cut(s) | 2076 |
| BfoI | RGCGCY | 1 cut(s) | 2278 |
| BisI | GCNGC | 6 cut(s) | 1353, 2073, 2101, 2104, 2213, 2216 |
| BlpI | GCTNAGC | 2 cut(s) | 612, 1721 |
| BlsI | GCNGC | 6 cut(s) | 1354, 2074, 2102, 2105, 2214, 2217 |
| Bme1390I | CCNGG | 4 cut(s) | 541, 646, 1794, 2001 |
| Bme18I | GGWCC | 3 cut(s) | 656, 1381, 2045 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1548 |
| BmgT120I | GGNCC | 4 cut(s) | 656, 1381, 2045, 2204 |
| BmiI | GGNNCC | 4 cut(s) | 657, 1791, 1881, 2276 |
| BmrFI | CCNGG | 4 cut(s) | 541, 646, 1794, 2001 |
| BmrI | ACTGGG | 2 cut(s) | 585, 822 |
| BmsI | GCATC | 5 cut(s) | 631, 889, 1339, 2184, 2330 |
| BmtI | GCTAGC | 1 cut(s) | 332 |
| BmuI | ACTGGG | 2 cut(s) | 585, 822 |
| BpiI | GAAGAC | 3 cut(s) | 12, 752, 1761 |
| BpmI | CTGGAG | 2 cut(s) | 1815, 2412 |
| Bpu10I | CCTNAGC | 2 cut(s) | 435, 1389 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 612, 1721 |
| Bpu14I | TTCGAA | 3 cut(s) | 119, 1587, 2191 |
| BpuMI | CCSGG | 2 cut(s) | 541, 646 |
| BsaHI | GRCGYC | 1 cut(s) | 2275 |
| BsaI | GGTCTC | 1 cut(s) | 951 |
| BsaJI | CCNNGG | 2 cut(s) | 1816, 2278 |
| BsaWI | WCCGGW | 2 cut(s) | 556, 2434 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 43, 1390, 1786 |
| Bse118I | RCCGGY | 1 cut(s) | 1896 |
| Bse1I | ACTGG | 9 cut(s) | 16, 391, 407, 580, 751, 817, 823, 1136, 2429 |
| Bse21I | CCTNAGG | 1 cut(s) | 1435 |
| BseBI | CCWGG | 2 cut(s) | 1794, 2001 |
| BseDI | CCNNGG | 2 cut(s) | 1816, 2278 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 43, 1390, 1786 |
| BseMII | CTCAG | 8 cut(s) | 204, 626, 848, 863, 1330, 1449, 1875, 1957 |
| BseNI | ACTGG | 9 cut(s) | 16, 391, 407, 580, 751, 817, 823, 1136, 2429 |
| BseRI | GAGGAG | 3 cut(s) | 65, 529, 532 |
| BseSI | GKGCMC | 1 cut(s) | 1312 |
| BseXI | GCAGC | 5 cut(s) | 1339, 2059, 2112, 2224, 2227 |
| BsgI | GTGCAG | 1 cut(s) | 2054 |
| BshFI | GGCC | 5 cut(s) | 463, 1490, 1531, 1926, 2205 |
| BshNI | GGYRCC | 1 cut(s) | 2274 |
| BsiSI | CCGG | 6 cut(s) | 540, 557, 645, 1379, 1897, 2435 |
| BslFI | GGGAC | 2 cut(s) | 829, 2241 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 43, 1390, 1786 |
| BsmAI | GTCTC | 5 cut(s) | 209, 951, 998, 1180, 1622 |
| BsmFI | GGGAC | 2 cut(s) | 829, 2241 |
| BsnI | GGCC | 5 cut(s) | 463, 1490, 1531, 1926, 2205 |
| Bso31I | GGTCTC | 1 cut(s) | 951 |
| Bsp119I | TTCGAA | 3 cut(s) | 119, 1587, 2191 |
| Bsp1286I | GDGCHC | 4 cut(s) | 546, 1154, 1286, 1312 |
| Bsp143I | GATC | 9 cut(s) | 379, 765, 1015, 1165, 1330, 1711, 1906, 2052, 2233 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 612, 1721 |
| BspACI | CCGC | 5 cut(s) | 102, 808, 1876, 2103, 2283 |
| BspANI | GGCC | 5 cut(s) | 463, 1490, 1531, 1926, 2205 |
| BspCNI | CTCAG | 8 cut(s) | 205, 625, 849, 862, 1329, 1448, 1876, 1956 |
| BspHI | TCATGA | 1 cut(s) | 382 |
| BspLI | GGNNCC | 4 cut(s) | 657, 1791, 1881, 2276 |
| BspOI | GCTAGC | 1 cut(s) | 332 |
| BspPI | GGATC | 2 cut(s) | 1023, 1325 |
| BspT104I | TTCGAA | 3 cut(s) | 119, 1587, 2191 |
| BspT107I | GGYRCC | 1 cut(s) | 2274 |
| BspTNI | GGTCTC | 1 cut(s) | 951 |
| BsrFI | RCCGGY | 1 cut(s) | 1896 |
| BsrI | ACTGG | 9 cut(s) | 16, 391, 407, 580, 751, 817, 823, 1136, 2429 |
| BssAI | RCCGGY | 1 cut(s) | 1896 |
| BssECI | CCNNGG | 2 cut(s) | 1816, 2278 |
| BssMI | GATC | 9 cut(s) | 379, 765, 1015, 1165, 1330, 1711, 1906, 2052, 2233 |
| BssNAI | GTATAC | 1 cut(s) | 2356 |
| BssNI | GRCGYC | 1 cut(s) | 2275 |
| BssSI | CACGAG | 1 cut(s) | 2030 |
| BssT1I | CCWWGG | 2 cut(s) | 1816, 2278 |
| Bst1107I | GTATAC | 1 cut(s) | 2356 |
| Bst2BI | CACGAG | 1 cut(s) | 2030 |
| Bst2UI | CCWGG | 2 cut(s) | 1794, 2001 |
| Bst4CI | ACNGT | 5 cut(s) | 138, 301, 911, 1562, 1613 |
| Bst6I | CTCTTC | 2 cut(s) | 1047, 1082 |
| BstACI | GRCGYC | 1 cut(s) | 2275 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 634 |
| BstBI | TTCGAA | 3 cut(s) | 119, 1587, 2191 |
| BstC8I | GCNNGC | 6 cut(s) | 78, 330, 787, 791, 957, 2258 |
| BstEII | GGTNACC | 1 cut(s) | 1995 |
| BstH2I | RGCGCY | 1 cut(s) | 2278 |
| BstHHI | GCGC | 2 cut(s) | 412, 2277 |
| BstKTI | GATC | 9 cut(s) | 382, 768, 1018, 1168, 1333, 1714, 1909, 2055, 2236 |
| BstMAI | GTCTC | 5 cut(s) | 209, 951, 998, 1180, 1622 |
| BstMBI | GATC | 9 cut(s) | 379, 765, 1015, 1165, 1330, 1711, 1906, 2052, 2233 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 416, 496, 634, 2032, 2078, 2375 |
| BstNI | CCWGG | 2 cut(s) | 1794, 2001 |
| BstNSI | RCATGY | 3 cut(s) | 153, 632, 2296 |
| BstPI | GGTNACC | 1 cut(s) | 1995 |
| BstSCI | CCNGG | 4 cut(s) | 539, 644, 1792, 1999 |
| BstSFI | CTRYAG | 1 cut(s) | 2076 |
| BstSLI | GKGCMC | 1 cut(s) | 1312 |
| BstV1I | GCAGC | 5 cut(s) | 1339, 2059, 2112, 2224, 2227 |
| BstV2I | GAAGAC | 3 cut(s) | 12, 752, 1761 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1218 |
| BstZ17I | GTATAC | 1 cut(s) | 2356 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1435 |
| BsuRI | GGCC | 5 cut(s) | 463, 1490, 1531, 1926, 2205 |
| BtgZI | GCGATG | 1 cut(s) | 2307 |
| BtsI | GCAGTG | 1 cut(s) | 1428 |
| BtsIMutI | CAGTG | 4 cut(s) | 602, 1108, 1428, 1618 |
| Cac8I | GCNNGC | 6 cut(s) | 78, 330, 787, 791, 957, 2258 |
| CaiI | CAGNNNCTG | 1 cut(s) | 856 |
| CciI | TCATGA | 1 cut(s) | 382 |
| CfoI | GCGC | 2 cut(s) | 412, 2277 |
| Cfr10I | RCCGGY | 1 cut(s) | 1896 |
| Cfr13I | GGNCC | 4 cut(s) | 656, 1381, 2045, 2204 |
| CsiI | ACCWGGT | 1 cut(s) | 1999 |
| Csp6I | GTAC | 4 cut(s) | 4, 55, 853, 2432 |
| CviQI | GTAC | 4 cut(s) | 4, 55, 853, 2432 |
| DinI | GGCGCC | 1 cut(s) | 2276 |
| DpnI | GATC | 9 cut(s) | 381, 767, 1017, 1167, 1332, 1713, 1908, 2054, 2235 |
| DpnII | GATC | 9 cut(s) | 379, 765, 1015, 1165, 1330, 1711, 1906, 2052, 2233 |
| DraI | TTTAAA | 2 cut(s) | 322, 457 |
| DraIII | CACNNNGTG | 1 cut(s) | 1738 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1548 |
| EaeI | YGGCCR | 2 cut(s) | 461, 1488 |
| Eam1104I | CTCTTC | 2 cut(s) | 1047, 1082 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1548 |
| EarI | CTCTTC | 2 cut(s) | 1047, 1082 |
| EciI | GGCGGA | 1 cut(s) | 823 |
| Eco130I | CCWWGG | 2 cut(s) | 1816, 2278 |
| Eco147I | AGGCCT | 1 cut(s) | 1926 |
| Eco24I | GRGCYC | 3 cut(s) | 546, 1154, 1286 |
| Eco31I | GGTCTC | 1 cut(s) | 951 |
| Eco32I | GATATC | 1 cut(s) | 1955 |
| Eco47I | GGWCC | 3 cut(s) | 656, 1381, 2045 |
| Eco57I | CTGAAG | 5 cut(s) | 512, 1422, 1536, 1627, 2424 |
| Eco81I | CCTNAGG | 1 cut(s) | 1435 |
| Eco91I | GGTNACC | 1 cut(s) | 1995 |
| EcoO109I | RGGNCCY | 1 cut(s) | 656 |
| EcoO65I | GGTNACC | 1 cut(s) | 1995 |
| EcoRI | GAATTC | 1 cut(s) | 1395 |
| EcoRII | CCWGG | 2 cut(s) | 1792, 1999 |
| EcoRV | GATATC | 1 cut(s) | 1955 |
| EcoT14I | CCWWGG | 2 cut(s) | 1816, 2278 |
| EcoT38I | GRGCYC | 3 cut(s) | 546, 1154, 1286 |
| EgeI | GGCGCC | 1 cut(s) | 2276 |
| EheI | GGCGCC | 1 cut(s) | 2276 |
| ErhI | CCWWGG | 2 cut(s) | 1816, 2278 |
| FaqI | GGGAC | 2 cut(s) | 829, 2241 |
| FauI | CCCGC | 1 cut(s) | 1869 |
| FauNDI | CATATG | 2 cut(s) | 951, 1182 |
| FbaI | TGATCA | 4 cut(s) | 379, 765, 1165, 1906 |
| FblI | GTMKAC | 1 cut(s) | 2355 |
| Fnu4HI | GCNGC | 6 cut(s) | 1353, 2073, 2101, 2104, 2213, 2216 |
| FriOI | GRGCYC | 3 cut(s) | 546, 1154, 1286 |
| Fsp4HI | GCNGC | 6 cut(s) | 1353, 2073, 2101, 2104, 2213, 2216 |
| FspBI | CTAG | 7 cut(s) | 246, 329, 483, 677, 1500, 1970, 2114 |
| GlaI | GCGC | 2 cut(s) | 411, 2276 |
| GluI | GCNGC | 6 cut(s) | 1353, 2073, 2101, 2104, 2213, 2216 |
| GsuI | CTGGAG | 2 cut(s) | 1815, 2412 |
| HaeII | RGCGCY | 1 cut(s) | 2278 |
| HaeIII | GGCC | 5 cut(s) | 463, 1490, 1531, 1926, 2205 |
| HapII | CCGG | 6 cut(s) | 540, 557, 645, 1379, 1897, 2435 |
| HhaI | GCGC | 2 cut(s) | 412, 2277 |
| Hin1I | GRCGYC | 1 cut(s) | 2275 |
| Hin6I | GCGC | 2 cut(s) | 410, 2275 |
| HinP1I | GCGC | 2 cut(s) | 410, 2275 |
| HincII | GTYRAC | 2 cut(s) | 369, 2269 |
| HindII | GTYRAC | 2 cut(s) | 369, 2269 |
| HindIII | AAGCTT | 1 cut(s) | 473 |
| HpaI | GTTAAC | 1 cut(s) | 2269 |
| HpaII | CCGG | 6 cut(s) | 540, 557, 645, 1379, 1897, 2435 |
| HphI | GGTGA | 8 cut(s) | 53, 1000, 1649, 1721, 1832, 1865, 1966, 2111 |
| Hpy166II | GTNNAC | 8 cut(s) | 159, 369, 400, 907, 975, 2119, 2269, 2356 |
| Hpy8I | GTNNAC | 8 cut(s) | 159, 369, 400, 907, 975, 2119, 2269, 2356 |
| Hpy99I | CGWCG | 1 cut(s) | 2398 |
| HpyCH4III | ACNGT | 5 cut(s) | 138, 301, 911, 1562, 1613 |
| HpyCH4IV | ACGT | 1 cut(s) | 1217 |
| HpyCH4V | TGCA | 9 cut(s) | 80, 179, 317, 536, 793, 902, 1324, 2035, 2256 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 416, 496, 634, 2032, 2078, 2375 |
| HpySE526I | ACGT | 1 cut(s) | 1217 |
| Hsp92I | GRCGYC | 1 cut(s) | 2275 |
| HspAI | GCGC | 2 cut(s) | 410, 2275 |
| KasI | GGCGCC | 1 cut(s) | 2274 |
| Ksp22I | TGATCA | 4 cut(s) | 379, 765, 1165, 1906 |
| KspAI | GTTAAC | 1 cut(s) | 2269 |
| Kzo9I | GATC | 9 cut(s) | 379, 765, 1015, 1165, 1330, 1711, 1906, 2052, 2233 |
| LmnI | GCTCC | 3 cut(s) | 487, 1789, 1879 |
| Lsp1109I | GCAGC | 5 cut(s) | 1339, 2059, 2112, 2224, 2227 |
| LweI | GCATC | 5 cut(s) | 631, 889, 1339, 2184, 2330 |
| MabI | ACCWGGT | 1 cut(s) | 1999 |
| MaeI | CTAG | 7 cut(s) | 246, 329, 483, 677, 1500, 1970, 2114 |
| MaeII | ACGT | 1 cut(s) | 1217 |
| MalI | GATC | 9 cut(s) | 381, 767, 1017, 1167, 1332, 1713, 1908, 2054, 2235 |
| MboI | GATC | 9 cut(s) | 379, 765, 1015, 1165, 1330, 1711, 1906, 2052, 2233 |
| MfeI | CAATTG | 1 cut(s) | 622 |
| MhlI | GDGCHC | 4 cut(s) | 546, 1154, 1286, 1312 |
| MlsI | TGGCCA | 2 cut(s) | 463, 1490 |
| MluNI | TGGCCA | 2 cut(s) | 463, 1490 |
| Mly113I | GGCGCC | 1 cut(s) | 2275 |
| MlyI | GAGTC | 3 cut(s) | 1016, 1099, 1121 |
| MmeI | TCCRAC | 1 cut(s) | 147 |
| Mox20I | TGGCCA | 2 cut(s) | 463, 1490 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2294 |
| MscI | TGGCCA | 2 cut(s) | 463, 1490 |
| MseI | TTAA | 8 cut(s) | 321, 456, 1554, 1914, 1962, 2085, 2268, 2452 |
| MslI | CAYNNNNRTG | 3 cut(s) | 282, 1216, 2251 |
| Msp20I | TGGCCA | 2 cut(s) | 463, 1490 |
| MspA1I | CMGCKG | 1 cut(s) | 2103 |
| MspI | CCGG | 6 cut(s) | 540, 557, 645, 1379, 1897, 2435 |
| MspR9I | CCNGG | 4 cut(s) | 541, 646, 1794, 2001 |
| MunI | CAATTG | 1 cut(s) | 622 |
| MvaI | CCWGG | 2 cut(s) | 1794, 2001 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 416, 496, 634, 2032, 2078, 2375 |
| NarI | GGCGCC | 1 cut(s) | 2275 |
| NciI | CCSGG | 2 cut(s) | 541, 646 |
| NdeI | CATATG | 2 cut(s) | 951, 1182 |
| NdeII | GATC | 9 cut(s) | 379, 765, 1015, 1165, 1330, 1711, 1906, 2052, 2233 |
| NheI | GCTAGC | 1 cut(s) | 328 |
| NlaIV | GGNNCC | 4 cut(s) | 657, 1791, 1881, 2276 |
| NmeAIII | GCCGAG | 1 cut(s) | 2145 |
| NmuCI | GTSAC | 7 cut(s) | 571, 1261, 1368, 1637, 1730, 1820, 1972 |
| NspI | RCATGY | 3 cut(s) | 153, 632, 2296 |
| NspV | TTCGAA | 3 cut(s) | 119, 1587, 2191 |
| OliI | CACNNNNGTG | 1 cut(s) | 1216 |
| PagI | TCATGA | 1 cut(s) | 382 |
| PceI | AGGCCT | 1 cut(s) | 1926 |
| PciI | ACATGT | 2 cut(s) | 149, 2292 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2294 |
| PkrI | GCNGC | 6 cut(s) | 1354, 2074, 2102, 2105, 2214, 2217 |
| PleI | GAGTC | 3 cut(s) | 1016, 1098, 1120 |
| PluTI | GGCGCC | 1 cut(s) | 2278 |
| PpsI | GAGTC | 3 cut(s) | 1016, 1098, 1120 |
| PpuMI | RGGWCCY | 1 cut(s) | 656 |
| PscI | ACATGT | 2 cut(s) | 149, 2292 |
| PshBI | ATTAAT | 1 cut(s) | 1962 |
| Psp5II | RGGWCCY | 1 cut(s) | 656 |
| Psp6I | CCWGG | 2 cut(s) | 1792, 1999 |
| PspEI | GGTNACC | 1 cut(s) | 1995 |
| PspGI | CCWGG | 2 cut(s) | 1792, 1999 |
| PspN4I | GGNNCC | 4 cut(s) | 657, 1791, 1881, 2276 |
| PspPI | GGNCC | 4 cut(s) | 656, 1381, 2045, 2204 |
| PspPPI | RGGWCCY | 1 cut(s) | 656 |
| PsrI | GAACNNNNNNTAC | 1 cut(s) | 28 |
| PstNI | CAGNNNCTG | 1 cut(s) | 856 |
| RsaI | GTAC | 4 cut(s) | 5, 56, 854, 2433 |
| RsaNI | GTAC | 4 cut(s) | 4, 55, 853, 2432 |
| RseI | CAYNNNNRTG | 3 cut(s) | 282, 1216, 2251 |
| SaqAI | TTAA | 8 cut(s) | 321, 456, 1554, 1914, 1962, 2085, 2268, 2452 |
| SatI | GCNGC | 6 cut(s) | 1353, 2073, 2101, 2104, 2213, 2216 |
| Sau3AI | GATC | 9 cut(s) | 379, 765, 1015, 1165, 1330, 1711, 1906, 2052, 2233 |
| Sau96I | GGNCC | 4 cut(s) | 656, 1381, 2045, 2204 |
| SchI | GAGTC | 3 cut(s) | 1016, 1099, 1121 |
| ScrFI | CCNGG | 4 cut(s) | 541, 646, 1794, 2001 |
| SduI | GDGCHC | 4 cut(s) | 546, 1154, 1286, 1312 |
| SexAI | ACCWGGT | 1 cut(s) | 1999 |
| SfaNI | GCATC | 5 cut(s) | 631, 889, 1339, 2184, 2330 |
| SfcI | CTRYAG | 1 cut(s) | 2076 |
| SfoI | GGCGCC | 1 cut(s) | 2276 |
| SfuI | TTCGAA | 3 cut(s) | 119, 1587, 2191 |
| SinI | GGWCC | 3 cut(s) | 656, 1381, 2045 |
| SmiI | ATTTAAAT | 1 cut(s) | 322 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 282, 1216, 2251 |
| SseBI | AGGCCT | 1 cut(s) | 1926 |
| SsiI | CCGC | 5 cut(s) | 102, 808, 1876, 2103, 2283 |
| SspDI | GGCGCC | 1 cut(s) | 2274 |
| SspMI | CTAG | 7 cut(s) | 246, 329, 483, 677, 1500, 1970, 2114 |
| StuI | AGGCCT | 1 cut(s) | 1926 |
| StyD4I | CCNGG | 4 cut(s) | 539, 644, 1792, 1999 |
| StyI | CCWWGG | 2 cut(s) | 1816, 2278 |
| SwaI | ATTTAAAT | 1 cut(s) | 322 |
| TaaI | ACNGT | 5 cut(s) | 138, 301, 911, 1562, 1613 |
| TaiI | ACGT | 1 cut(s) | 1220 |
| TatI | WGTACW | 1 cut(s) | 54 |
| TauI | GCSGC | 1 cut(s) | 2106 |
| Tru1I | TTAA | 8 cut(s) | 321, 456, 1554, 1914, 1962, 2085, 2268, 2452 |
| Tru9I | TTAA | 8 cut(s) | 321, 456, 1554, 1914, 1962, 2085, 2268, 2452 |
| TscAI | CASTG | 4 cut(s) | 602, 1108, 1435, 1618 |
| TseFI | GTSAC | 7 cut(s) | 571, 1261, 1368, 1637, 1730, 1820, 1972 |
| TseI | GCWGC | 5 cut(s) | 1352, 2072, 2100, 2212, 2215 |
| Tsp45I | GTSAC | 7 cut(s) | 571, 1261, 1368, 1637, 1730, 1820, 1972 |
| TspDTI | ATGAA | 6 cut(s) | 694, 1100, 1116, 2025, 2076, 2433 |
| TspGWI | ACGGA | 1 cut(s) | 219 |
| TspRI | CASTG | 4 cut(s) | 602, 1108, 1435, 1618 |
| VpaK11BI | GGWCC | 3 cut(s) | 656, 1381, 2045 |
| VspI | ATTAAT | 1 cut(s) | 1962 |
| XapI | RAATTY | 3 cut(s) | 181, 1395, 1590 |
| XceI | RCATGY | 3 cut(s) | 153, 632, 2296 |
| XmiI | GTMKAC | 1 cut(s) | 2355 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2294 |
| XspI | CTAG | 7 cut(s) | 246, 329, 483, 677, 1500, 1970, 2114 |