FvH4_7g27290

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018480
Physical Location & Seq
Reverse (-)
20428777 .. 20430423
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27290.t1

Sequence Viewer

Length: 1317 bp
ATGGATAAGCCTCACATCTGCAAGATCTGCAACAAGCGATTCAAAGGTGGCAAGGCCATGGGCGGACACATGAGATCTCATCTCGCCAAGCTTCCTATCCCTCCCAAACAGCCCCCACCTCCTCCTCCGCCGCCAGCGACTCCTTCTCCGCCGCAGCGGCTCGCTCACTCTCCGGAGTTTTCATCCTCCTCGAGTCATTATATCCACAACAATAACAACAACATCCTCCGAATCCGAAACATCAACAGCAGCGTCATGCAGATGATGATGGTGCAGTCTCCTCCTCCGGCTCCGGCGACGGTTCCGGCTTCGTATCTGAAGTACCGGGAAGTTGTTGATGTTACTACTGCTGCGGCTCCTCCGTCGTCGATGGACAGCGACAGCACGGAGTCGATGTCAAAGAAGCCGACAAGGAGAAGATCCAAACGACGTCGTAAGATGGTTGTGAGAGTTGTGCCGCCGCCAGAGGTAAGTTCCGTTACCAACGATACTTTCTCATCGGAAGATTGTGCTCTGTCTCTTATGATGCTGTCAAGGGACACATGGAAAGTGAAAGTCACCAACAATGATCAAGTAGCGCATGTTGAAGAAGAAGAAGAAGAAGATGAAGAAGAAACTGAAGATGAAGAAGAGGAAGAGGAAGAGGAAGAAGACGACGTCGTTTTCGTCGCCAGGGCTACTCCAAAGAGTGCTTCTTCTAATTATCAAGGTGGGAAGTACAAGTGCGACACTTGCAAGAAAGCGTTCCAATCCTACCAAGCGCTCGGCGGCCACCGCGCCAGCCACAAGAGAATCCGCCACCAAGTCTTTGAAGAGGAAGAGGATGACGTGGACGCCGCCGATGATGATGAGGAGTCTGAGGAGGAGGTTGTAGAAGTAGGAGGAGGTGGAAACAATGGCAGAGGTGGTGGTAATGGTGGTGGAGGAAGTGGTGGTGTGCGAGGGTATAACGGTCATTCTGGAGTTGTGGAGCATCCTCCTCCCAGGGTGTTTGAATGTCCATTTTGTTTCAAGCTGTTTGATTCTGGCCAAGCACTTGGTGGGCACAAGAAGGTGCACTATTATAATAATACTAATACTAGTTACTATAATACCAACAACAATGTCAGCAGCAACAAATTCCCTGCTGCTAGTACTAGTAACACCAACACCAACACTGCTGCTAGGGCCTCTTCCTCCTCTGCAAATGTATCTTCTGCAAACTATGGAGACAACAATTTGGTGATTGATCTCAATCTCCCAGCACCAGAAGAAGAGCTGGAGTTTTCGACGAAGGATGAGGACCCAGTTGGGTTTGTTTTAGCTGACATTTATTAA

Protein Analysis

439

Amino Acids

47.98

Weight (kDa)

5.24

Isoelectric Point (pI)

76.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 5 - 29 2e-08 C2H2-type zinc finger
zf-C2H2_6 PF13912 240 - 264 3.2e-12 C2H2-type zinc finger
zf-C2H2_6 PF13912 330 - 353 6.6e-07 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27290
rosa_chinensis RchiOBHm_Chr1g0374121
rosa_laevigata RLG00000026761
rosa_multiflora Rmu_sc0020614.1_g000003 Rmu_sc0026266.1_g000001
rosa_rugosa Rorug01G0380800
rosa_samantha Rh1AG391700 Rh1CG368700 Rh1DG386400
rosa_wichuraiana Rw1G034390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1065
AatII GACGTC 2 cut(s) 433, 660
AccII CGCG 1 cut(s) 777
AccIII TCCGGA 1 cut(s) 172
AclWI GGATC 1 cut(s) 414
AcoI YGGCCR 2 cut(s) 769, 1027
AcsI RAATTY 1 cut(s) 1118
AcuI CTGAAG 2 cut(s) 338, 639
AcyI GRCGYC 3 cut(s) 430, 657, 834
AdeI CACNNNGTG 1 cut(s) 1040
AfaI GTAC 3 cut(s) 323, 719, 1135
AfeI AGCGCT 1 cut(s) 762
AgsI TTSAA 5 cut(s) 43, 587, 812, 995, 1012
AhlI ACTAGT 2 cut(s) 1079, 1136
AjiI CACGTC 1 cut(s) 829
AjnI CCWGG 2 cut(s) 671, 983
AjuI GAANNNNNNNTTGG 4 cut(s) 476, 508, 676, 708
AluBI AGCT 4 cut(s) 91, 1015, 1258, 1304
AluI AGCT 4 cut(s) 91, 1015, 1258, 1304
Alw21I GWGCWC 2 cut(s) 514, 1059
Alw26I GTCTC 3 cut(s) 282, 522, 1203
Alw44I GTGCAC 1 cut(s) 1055
AlwI GGATC 1 cut(s) 414
Ama87I CYCGRG 1 cut(s) 190
Aor13HI TCCGGA 1 cut(s) 172
Aor51HI AGCGCT 1 cut(s) 762
AoxI GGCC 4 cut(s) 54, 769, 1027, 1167
ApaLI GTGCAC 1 cut(s) 1055
ApeKI GCWGC 6 cut(s) 154, 249, 350, 1110, 1127, 1160
ApoI RAATTY 1 cut(s) 1118
ArsI GACNNNNNNTTYG 2 cut(s) 647, 679
Asp700I GAANNNNTTC 1 cut(s) 743
AspLEI GCGC 3 cut(s) 580, 763, 779
AspS9I GGNCC 2 cut(s) 1167, 1282
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 550, 1234
AvaI CYCGRG 1 cut(s) 190
AvaII GGWCC 1 cut(s) 1282
BaeGI GKGCMC 2 cut(s) 1047, 1059
BalI TGGCCA 1 cut(s) 1029
BbsI GAAGAC 1 cut(s) 657
Bbv12I GWGCWC 2 cut(s) 514, 1059
BbvI GCAGC 6 cut(s) 166, 261, 337, 1114, 1122, 1147
BccI CCATC 3 cut(s) 262, 364, 433
BciT130I CCWGG 2 cut(s) 673, 985
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 3 cut(s) 282, 522, 1203
BcuI ACTAGT 2 cut(s) 1079, 1136
BfaI CTAG 4 cut(s) 1080, 1131, 1137, 1164
BfoI RGCGCY 1 cut(s) 764
BglI GCCNNNNNGGC 1 cut(s) 157
BglII AGATCT 2 cut(s) 24, 74
BmcAI AGTACT 1 cut(s) 1135
Bme1390I CCNGG 3 cut(s) 326, 673, 985
Bme18I GGWCC 1 cut(s) 1282
BmeT110I CYCGRG 1 cut(s) 190
BmgBI CACGTC 1 cut(s) 829
BmgT120I GGNCC 2 cut(s) 1167, 1282
BmiI GGNNCC 4 cut(s) 291, 303, 357, 1284
BmrFI CCNGG 3 cut(s) 326, 673, 985
BmrI ACTGGG 1 cut(s) 1280
BmsI GCATC 2 cut(s) 516, 982
BmuI ACTGGG 1 cut(s) 1280
BpiI GAAGAC 1 cut(s) 657
BpmI CTGGAG 2 cut(s) 981, 1280
BpuMI CCSGG 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 1233
BsaHI GRCGYC 3 cut(s) 430, 657, 834
BsaJI CCNNGG 4 cut(s) 57, 672, 983, 984
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 4 cut(s) 130, 160, 380, 410
Bse1I ACTGG 1 cut(s) 1286
Bse8I GATNNNNATC 1 cut(s) 1233
BseAI TCCGGA 1 cut(s) 172
BseBI CCWGG 2 cut(s) 673, 985
BseDI CCNNGG 4 cut(s) 57, 672, 983, 984
BseGI GGATG 5 cut(s) 182, 222, 829, 973, 1282
BseJI GATNNNNATC 1 cut(s) 1233
BseMII CTCAG 1 cut(s) 849
BseNI ACTGG 1 cut(s) 1286
BseSI GKGCMC 2 cut(s) 1047, 1059
BseXI GCAGC 6 cut(s) 166, 261, 337, 1114, 1122, 1147
BseYI CCCAGC 1 cut(s) 1240
BsgI GTGCAG 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 777
BshFI GGCC 4 cut(s) 56, 771, 1029, 1169
BsiHKAI GWGCWC 2 cut(s) 514, 1059
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 5 cut(s) 173, 287, 293, 305, 325
BslFI GGGAC 1 cut(s) 551
BsmAI GTCTC 3 cut(s) 282, 522, 1203
BsmFI GGGAC 1 cut(s) 551
BsnI GGCC 4 cut(s) 56, 771, 1029, 1169
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 3 cut(s) 514, 1047, 1059
Bsp13I TCCGGA 1 cut(s) 172
Bsp143I GATC 5 cut(s) 24, 74, 419, 568, 1228
Bsp19I CCATGG 1 cut(s) 57
BspANI GGCC 4 cut(s) 56, 771, 1029, 1169
BspCNI CTCAG 1 cut(s) 850
BspEI TCCGGA 1 cut(s) 172
BspFNI CGCG 1 cut(s) 777
BspLI GGNNCC 4 cut(s) 291, 303, 357, 1284
BspPI GGATC 1 cut(s) 414
BspQI GCTCTTC 1 cut(s) 1248
BsrI ACTGG 1 cut(s) 1286
BssECI CCNNGG 4 cut(s) 57, 672, 983, 984
BssMI GATC 5 cut(s) 24, 74, 419, 568, 1228
BssNI GRCGYC 3 cut(s) 430, 657, 834
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 2 cut(s) 673, 985
Bst4CI ACNGT 2 cut(s) 301, 953
Bst6I CTCTTC 7 cut(s) 624, 630, 636, 807, 813, 1177, 1248
BstACI GRCGYC 3 cut(s) 430, 657, 834
BstAPI GCANNNNNTGC 1 cut(s) 27
BstC8I GCNNGC 3 cut(s) 135, 162, 781
BstDEI CTNAG 1 cut(s) 858
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 5 cut(s) 182, 222, 829, 973, 1282
BstFNI CGCG 1 cut(s) 777
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 3 cut(s) 580, 763, 779
BstKTI GATC 5 cut(s) 27, 77, 422, 571, 1231
BstMAI GTCTC 3 cut(s) 282, 522, 1203
BstMBI GATC 5 cut(s) 24, 74, 419, 568, 1228
BstMWI GCNNNNNNNGC 5 cut(s) 27, 157, 732, 774, 1166
BstNI CCWGG 2 cut(s) 673, 985
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 3 cut(s) 324, 671, 983
BstSLI GKGCMC 2 cut(s) 1047, 1059
BstUI CGCG 1 cut(s) 777
BstV1I GCAGC 6 cut(s) 166, 261, 337, 1114, 1122, 1147
BstV2I GAAGAC 1 cut(s) 657
BstX2I RGATCY 3 cut(s) 24, 74, 419
BstXI CCANNNNNNTGG 1 cut(s) 1037
BstYI RGATCY 3 cut(s) 24, 74, 419
BsuRI GGCC 4 cut(s) 56, 771, 1029, 1169
BtgI CCRYGG 1 cut(s) 57
BtrI CACGTC 1 cut(s) 829
BtsCI GGATG 5 cut(s) 182, 222, 829, 973, 1282
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 1 cut(s) 1155
Cac8I GCNNGC 3 cut(s) 135, 162, 781
CfoI GCGC 3 cut(s) 580, 763, 779
Cfr13I GGNCC 2 cut(s) 1167, 1282
CseI GACGC 2 cut(s) 241, 842
Csp6I GTAC 3 cut(s) 322, 718, 1134
CviAII CATG 5 cut(s) 58, 70, 256, 543, 581
CviQI GTAC 3 cut(s) 322, 718, 1134
DdeI CTNAG 1 cut(s) 858
DpnI GATC 5 cut(s) 26, 76, 421, 570, 1230
DpnII GATC 5 cut(s) 24, 74, 419, 568, 1228
DraIII CACNNNGTG 1 cut(s) 1040
EaeI YGGCCR 2 cut(s) 769, 1027
Eam1104I CTCTTC 7 cut(s) 624, 630, 636, 807, 813, 1177, 1248
EarI CTCTTC 7 cut(s) 624, 630, 636, 807, 813, 1177, 1248
EciI GGCGGA 4 cut(s) 78, 117, 138, 785
Eco130I CCWWGG 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 1282
Eco47III AGCGCT 1 cut(s) 762
Eco57I CTGAAG 2 cut(s) 338, 639
Eco88I CYCGRG 1 cut(s) 190
EcoO109I RGGNCCY 2 cut(s) 1167, 1282
EcoRII CCWGG 2 cut(s) 671, 983
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 5 cut(s) 61, 73, 259, 546, 584
FaqI GGGAC 1 cut(s) 551
FatI CATG 5 cut(s) 57, 69, 255, 542, 580
FbaI TGATCA 1 cut(s) 568
FokI GGATG 5 cut(s) 169, 209, 836, 960, 1289
FspBI CTAG 4 cut(s) 1080, 1131, 1137, 1164
GlaI GCGC 3 cut(s) 579, 762, 778
GsaI CCCAGC 1 cut(s) 1244
GsuI CTGGAG 2 cut(s) 981, 1280
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 4 cut(s) 56, 771, 1029, 1169
HapII CCGG 5 cut(s) 173, 287, 293, 305, 325
HgaI GACGC 2 cut(s) 241, 842
HhaI GCGC 3 cut(s) 580, 763, 779
Hin1I GRCGYC 3 cut(s) 430, 657, 834
Hin1II CATG 5 cut(s) 61, 73, 259, 546, 584
Hin6I GCGC 3 cut(s) 578, 761, 777
HinP1I GCGC 3 cut(s) 578, 761, 777
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 8 cut(s) 39, 139, 193, 231, 389, 792, 854, 1022
HpaII CCGG 5 cut(s) 173, 287, 293, 305, 325
HphI GGTGA 2 cut(s) 550, 1234
Hpy166II GTNNAC 2 cut(s) 832, 1057
Hpy188I TCNGA 5 cut(s) 230, 236, 318, 502, 859
Hpy188III TCNNGA 2 cut(s) 173, 960
Hpy8I GTNNAC 2 cut(s) 832, 1057
Hpy99I CGWCG 9 cut(s) 301, 367, 370, 432, 435, 659, 662, 671, 1273
HpyAV CCTTC 3 cut(s) 153, 1045, 1267
HpyCH4III ACNGT 2 cut(s) 301, 953
HpyCH4IV ACGT 3 cut(s) 430, 657, 828
HpyCH4V TGCA 8 cut(s) 21, 30, 259, 274, 735, 1057, 1184, 1199
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 157, 732, 774, 1166
HpyF3I CTNAG 1 cut(s) 858
HpySE526I ACGT 3 cut(s) 430, 657, 828
Hsp92I GRCGYC 3 cut(s) 430, 657, 834
Hsp92II CATG 5 cut(s) 61, 73, 259, 546, 584
HspAI GCGC 3 cut(s) 578, 761, 777
Kpn2I TCCGGA 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 5 cut(s) 24, 74, 419, 568, 1228
LguI GCTCTTC 1 cut(s) 1248
LmnI GCTCC 3 cut(s) 295, 361, 970
Lsp1109I GCAGC 6 cut(s) 166, 261, 337, 1114, 1122, 1147
LweI GCATC 2 cut(s) 516, 982
MaeI CTAG 4 cut(s) 1080, 1131, 1137, 1164
MaeII ACGT 3 cut(s) 430, 657, 828
MaeIII GTNAC 5 cut(s) 340, 478, 556, 1082, 1139
MalI GATC 5 cut(s) 26, 76, 421, 570, 1230
MboI GATC 5 cut(s) 24, 74, 419, 568, 1228
MflI RGATCY 3 cut(s) 24, 74, 419
MhlI GDGCHC 3 cut(s) 514, 1047, 1059
MlsI TGGCCA 1 cut(s) 1029
MluCI AATT 3 cut(s) 700, 1118, 1216
MluNI TGGCCA 1 cut(s) 1029
MlyI GAGTC 4 cut(s) 133, 202, 398, 863
Mox20I TGGCCA 1 cut(s) 1029
MroI TCCGGA 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 743
MscI TGGCCA 1 cut(s) 1029
MseI TTAA 1 cut(s) 1315
MslI CAYNNNNRTG 1 cut(s) 260
Msp20I TGGCCA 1 cut(s) 1029
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 5 cut(s) 173, 287, 293, 305, 325
MspR9I CCNGG 3 cut(s) 326, 673, 985
MvaI CCWGG 2 cut(s) 673, 985
MvnI CGCG 1 cut(s) 777
MwoI GCNNNNNNNGC 5 cut(s) 27, 157, 732, 774, 1166
NciI CCSGG 1 cut(s) 326
NcoI CCATGG 1 cut(s) 57
NdeII GATC 5 cut(s) 24, 74, 419, 568, 1228
NlaIII CATG 5 cut(s) 61, 73, 259, 546, 584
NlaIV GGNNCC 4 cut(s) 291, 303, 357, 1284
NmeAIII GCCGAG 1 cut(s) 744
NmuCI GTSAC 1 cut(s) 556
NspI RCATGY 1 cut(s) 584
PaeR7I CTCGAG 1 cut(s) 190
PasI CCCWGGG 1 cut(s) 984
PciSI GCTCTTC 1 cut(s) 1248
PcsI WCGNNNNNNNCGW 1 cut(s) 663
PdmI GAANNNNTTC 1 cut(s) 743
PfeI GAWTC 4 cut(s) 39, 231, 792, 1022
PflFI GACNNNGTC 1 cut(s) 656
PleI GAGTC 4 cut(s) 133, 201, 397, 862
PpsI GAGTC 4 cut(s) 133, 201, 397, 862
PpuMI RGGWCCY 1 cut(s) 1282
PsiI TTATAA 1 cut(s) 1065
Psp5II RGGWCCY 1 cut(s) 1282
Psp6I CCWGG 2 cut(s) 671, 983
PspFI CCCAGC 1 cut(s) 1240
PspGI CCWGG 2 cut(s) 671, 983
PspN4I GGNNCC 4 cut(s) 291, 303, 357, 1284
PspPI GGNCC 2 cut(s) 1167, 1282
PspPPI RGGWCCY 1 cut(s) 1282
PspXI VCTCGAGB 1 cut(s) 190
PsuI RGATCY 3 cut(s) 24, 74, 419
PsyI GACNNNGTC 1 cut(s) 656
RsaI GTAC 3 cut(s) 323, 719, 1135
RsaNI GTAC 3 cut(s) 322, 718, 1134
RseI CAYNNNNRTG 1 cut(s) 260
SapI GCTCTTC 1 cut(s) 1248
SaqAI TTAA 1 cut(s) 1315
Sau3AI GATC 5 cut(s) 24, 74, 419, 568, 1228
Sau96I GGNCC 2 cut(s) 1167, 1282
ScaI AGTACT 1 cut(s) 1135
SchI GAGTC 4 cut(s) 133, 202, 398, 863
ScrFI CCNGG 3 cut(s) 326, 673, 985
SduI GDGCHC 3 cut(s) 514, 1047, 1059
SfaNI GCATC 2 cut(s) 516, 982
Sfr274I CTCGAG 1 cut(s) 190
SinI GGWCC 1 cut(s) 1282
SlaI CTCGAG 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
SpeI ACTAGT 2 cut(s) 1079, 1136
Sse9I AATT 3 cut(s) 700, 1118, 1216
SspMI CTAG 4 cut(s) 1080, 1131, 1137, 1164
StyD4I CCNGG 3 cut(s) 324, 671, 983
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 301, 953
TaiI ACGT 3 cut(s) 433, 660, 831
TaqI TCGA 4 cut(s) 191, 368, 392, 1268
TasI AATT 3 cut(s) 700, 1118, 1216
TatI WGTACW 2 cut(s) 717, 1133
TauI GCSGC 8 cut(s) 133, 154, 160, 356, 460, 463, 771, 839
TfiI GAWTC 4 cut(s) 39, 231, 792, 1022
Tru1I TTAA 1 cut(s) 1315
Tru9I TTAA 1 cut(s) 1315
TscAI CASTG 1 cut(s) 1162
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 6 cut(s) 154, 249, 350, 1110, 1127, 1160
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 3 cut(s) 171, 621, 639
TspGWI ACGGA 3 cut(s) 351, 401, 466
TspRI CASTG 1 cut(s) 1162
Tth111I GACNNNGTC 1 cut(s) 656
VneI GTGCAC 1 cut(s) 1055
VpaK11BI GGWCC 1 cut(s) 1282
XapI RAATTY 1 cut(s) 1118
XceI RCATGY 1 cut(s) 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 1037
XhoI CTCGAG 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 743
XspI CTAG 4 cut(s) 1080, 1131, 1137, 1164
ZraI GACGTC 2 cut(s) 431, 658
ZrmI AGTACT 1 cut(s) 1135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.