Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0018480

Physical Location & Seq

Genomic Coordinates Forward (+)

62292135 .. 62293463

Gene Structure 1329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G034390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGATAAGCCTTACACCTGCAAGATCTGCAACAAGCGCTTCAAAGGTGGCAAGGCCATGGGCGGACACATGAGATCTCATCTCGCCAAGCTTCCGCTCCCTCCCAAACACCCTCCACCTCCCCCGCCGCCGCCAGCGACTCCTTCTCCGCCGCAGCGGCTCGCACACTCGCCGGAGTTTTCATCCTCCTCGACTCATCATAACCTTAGCAACAACCACATCTTCCGAATCCGGAACTTAAACAGCAGCGTGAGCCTCATGCAGATGATGATGATGCAATCTCCTCCGCCGTCTACGGCCCCGGCCCCGGCTCCGGCGACTATTCTGAAGTACCGGGAAGTTGTTGTTGCTGCTGCTGCTGCTGCTGCGGCTCCTCCGTCGTCGATGGACTCGGCGGTGGAGAGCGACAGCACCGAGTCGCAGCAGAAGAACCTGACCCGGAGAAGATCCAAACGTCGTCGTAAGGTGATTGTGAGTGCGGCGCCGCCGCCCCTGGAGGCCGCCGAGGAGCAGCAGGGACACATGGAAAATGAAAAGGAGGAAGACGACGACGTCGTTTTCATCCCCAGGACTACTCCCAAGAGTACTTCTTCTAATAATCAAGGGGGGAAGTACAAGTGTGATACTTGCAAGAAAGAGTTCCAATCCTACCAAGCACTCGGCGGCCACCGAGCCAGCCACAAGAGAGTCCGGCACCAAGTCTTAGAGGAAGACGACGATGACGTGGAAGTCGGCGATGATGATTCCGAGGAGGATGAGGTGTTGGCAGTAGGAGGAAGAGGAGGTGGCAATGGCCGTGGCAGTGGTAATGGTGGTGGTGGTGGTGTCCAGGGGTATAATGGGAAGTCTGCTGTTGTGGAGCATCCTCCTCCCAGGGTATTTGAATGCCCATTTTGTTTCAAGCTGTTTGATTCTGGTCAAGCACTTGGTGGGCACAAGAAGGTGCACTATTATAATAATAATACTAATAACAATACTAGTTATAATAATACCAACAACAACAGCAGCAGCAGCAATGTCCCAGCTGCTAGTAGTACCACCAACACCAATACCAACACCAACAATGCTAGGGCCTCTTCCTCCTCAGCAAACGTATCTTCTGCAAACTATGGAGGCAACAATCTGGTGATTGATCTCAATCTCCCAGCACCAGAAGAAGAGTTCGACTTTTCGACAATTTCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

395

Amino Acids

42.43

Weight (kDa)

7.24

Isoelectric Point (pI)

63.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	5 - 29	3.5e-08	C2H2-type zinc finger
zf-C2H2_6	PF13912	205 - 229	2e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	293 - 316	5.8e-07	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018480)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27290
rosa_chinensis	RchiOBHm_Chr1g0374121
rosa_laevigata	RLG00000026761
rosa_multiflora	Rmu_sc0020614.1_g000003 Rmu_sc0026266.1_g000001
rosa_rugosa	Rorug01G0380800
rosa_samantha	Rh1AG391700 Rh1CG368700 Rh1DG386400
rosa_wichuraiana	Rw1G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	954, 984
AarI	CACCTGC	1 cut(s)	26
AasI	GACNNNNNNGTC	2 cut(s)	551, 728
AatII	GACGTC	1 cut(s)	555
Acc36I	ACCTGC	1 cut(s)	26
AccB1I	GGYRCC	2 cut(s)	481, 693
AccBSI	CCGCTC	1 cut(s)	97
AccI	GTMKAC	1 cut(s)	293
AccIII	TCCGGA	1 cut(s)	231
AclWI	GGATC	1 cut(s)	441
AcoI	YGGCCR	2 cut(s)	664, 793
AcuI	CTGAAG	1 cut(s)	347
AcyI	GRCGYC	2 cut(s)	482, 552
AdeI	CACNNNGTG	1 cut(s)	929
AfaI	GTAC	4 cut(s)	332, 586, 614, 1036
AfeI	AGCGCT	1 cut(s)	38
AfiI	CCNNNNNNNGG	2 cut(s)	307, 313
AgsI	TTSAA	3 cut(s)	43, 884, 901
AhlI	ACTAGT	1 cut(s)	977
AjiI	CACGTC	1 cut(s)	724
AjnI	CCWGG	4 cut(s)	492, 566, 828, 872
AluBI	AGCT	3 cut(s)	91, 904, 1025
AluI	AGCT	3 cut(s)	91, 904, 1025
Alw21I	GWGCWC	1 cut(s)	948
Alw44I	GTGCAC	1 cut(s)	944
AlwI	GGATC	1 cut(s)	441
Aor13HI	TCCGGA	1 cut(s)	231
Aor51HI	AGCGCT	1 cut(s)	38
AoxI	GGCC	7 cut(s)	54, 297, 303, 498, 664, 793, 1071
ApaLI	GTGCAC	1 cut(s)	944
Asp700I	GAANNNNTTC	1 cut(s)	638
AspLEI	GCGC	2 cut(s)	39, 484
AspS9I	GGNCC	3 cut(s)	298, 304, 1071
AsuC2I	CCSGG	4 cut(s)	302, 308, 335, 439
AsuHPI	GGTGA	2 cut(s)	478, 1138
BaeGI	GKGCMC	2 cut(s)	936, 948
BanI	GGYRCC	2 cut(s)	481, 693
BbsI	GAAGAC	2 cut(s)	549, 717
Bbv12I	GWGCWC	1 cut(s)	948
BbvCI	CCTCAGC	1 cut(s)	1084
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	3 cut(s)	274, 312, 780
BciT130I	CCWGG	4 cut(s)	494, 568, 830, 874
BcnI	CCSGG	4 cut(s)	302, 308, 335, 439
BcuI	ACTAGT	1 cut(s)	977
BfaI	CTAG	3 cut(s)	978, 1029, 1068
BfoI	RGCGCY	2 cut(s)	40, 485
BfuAI	ACCTGC	1 cut(s)	26
BglI	GCCNNNNNGGC	1 cut(s)	157
BglII	AGATCT	2 cut(s)	24, 74
BmcAI	AGTACT	1 cut(s)	586
Bme1390I	CCNGG	8 cut(s)	302, 308, 335, 439, 494, 568, 830, 874
BmgBI	CACGTC	1 cut(s)	724
BmgT120I	GGNCC	3 cut(s)	298, 304, 1071
BmiI	GGNNCC	6 cut(s)	300, 306, 312, 372, 483, 695
BmrFI	CCNGG	8 cut(s)	302, 308, 335, 439, 494, 568, 830, 874
BmsI	GCATC	2 cut(s)	264, 871
BpiI	GAAGAC	2 cut(s)	549, 717
BpmI	CTGGAG	1 cut(s)	515
Bpu10I	CCTNAGC	2 cut(s)	206, 1084
BpuMI	CCSGG	4 cut(s)	302, 308, 335, 439
BsaBI	GATNNNNATC	1 cut(s)	1137
BsaHI	GRCGYC	2 cut(s)	482, 552
BsaWI	WCCGGW	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 313
Bse3DI	GCAATG	2 cut(s)	796, 1021
Bse8I	GATNNNNATC	1 cut(s)	1137
BseAI	TCCGGA	1 cut(s)	231
BseBI	CCWGG	4 cut(s)	494, 568, 830, 874
BseGI	GGATG	4 cut(s)	182, 561, 760, 862
BseJI	GATNNNNATC	1 cut(s)	1137
BseLI	CCNNNNNNNGG	2 cut(s)	307, 313
BseMI	GCAATG	2 cut(s)	796, 1021
BseMII	CTCAG	1 cut(s)	1098
BseRI	GAGGAG	8 cut(s)	178, 273, 363, 521, 764, 795, 858, 1072
BseSI	GKGCMC	2 cut(s)	936, 948
BseYI	CCCAGC	2 cut(s)	1021, 1144
BshFI	GGCC	7 cut(s)	56, 299, 305, 500, 666, 795, 1073
BshNI	GGYRCC	2 cut(s)	481, 693
BsiHKAI	GWGCWC	1 cut(s)	948
BsiSI	CCGG	8 cut(s)	173, 232, 302, 308, 314, 334, 439, 691
BslFI	GGGAC	2 cut(s)	531, 1004
BslI	CCNNNNNNNGG	2 cut(s)	307, 313
BsmFI	GGGAC	2 cut(s)	531, 1004
BsmI	GAATGC	1 cut(s)	890
BsnI	GGCC	7 cut(s)	56, 299, 305, 500, 666, 795, 1073
Bsp1286I	GDGCHC	2 cut(s)	936, 948
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	24, 74, 446, 1132
Bsp19I	CCATGG	1 cut(s)	57
BspANI	GGCC	7 cut(s)	56, 299, 305, 500, 666, 795, 1073
BspCNI	CTCAG	1 cut(s)	1097
BspEI	TCCGGA	1 cut(s)	231
BspLI	GGNNCC	6 cut(s)	300, 306, 312, 372, 483, 695
BspMI	ACCTGC	1 cut(s)	26
BspPI	GGATC	1 cut(s)	441
BspT107I	GGYRCC	2 cut(s)	481, 693
BsrBI	CCGCTC	1 cut(s)	97
BsrDI	GCAATG	2 cut(s)	796, 1021
BssMI	GATC	4 cut(s)	24, 74, 446, 1132
BssNI	GRCGYC	2 cut(s)	482, 552
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	4 cut(s)	494, 568, 830, 874
Bst6I	CTCTTC	3 cut(s)	772, 1081, 1152
BstACI	GRCGYC	2 cut(s)	482, 552
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	135, 162, 676
BstDEI	CTNAG	3 cut(s)	206, 703, 1084
BstDSI	CCRYGG	2 cut(s)	57, 796
BstF5I	GGATG	4 cut(s)	182, 561, 760, 862
BstH2I	RGCGCY	2 cut(s)	40, 485
BstHHI	GCGC	2 cut(s)	39, 484
BstKTI	GATC	4 cut(s)	27, 77, 449, 1135
BstMBI	GATC	4 cut(s)	24, 74, 446, 1132
BstNI	CCWGG	4 cut(s)	494, 568, 830, 874
BstSCI	CCNGG	8 cut(s)	300, 306, 333, 437, 492, 566, 828, 872
BstSLI	GKGCMC	2 cut(s)	936, 948
BstV2I	GAAGAC	2 cut(s)	549, 717
BstX2I	RGATCY	3 cut(s)	24, 74, 446
BstYI	RGATCY	3 cut(s)	24, 74, 446
BsuRI	GGCC	7 cut(s)	56, 299, 305, 500, 666, 795, 1073
BtgI	CCRYGG	2 cut(s)	57, 796
BtgZI	GCGATG	1 cut(s)	750
BtrI	CACGTC	1 cut(s)	724
BtsCI	GGATG	4 cut(s)	182, 561, 760, 862
BtsI	GCAGTG	1 cut(s)	808
BtsIMutI	CAGTG	1 cut(s)	808
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	3 cut(s)	135, 162, 676
CfoI	GCGC	2 cut(s)	39, 484
Cfr13I	GGNCC	3 cut(s)	298, 304, 1071
Csp6I	GTAC	4 cut(s)	331, 585, 613, 1035
CspCI	CAANNNNNGTGG	2 cut(s)	778, 813
CviAII	CATG	4 cut(s)	58, 70, 259, 523
CviQI	GTAC	4 cut(s)	331, 585, 613, 1035
DdeI	CTNAG	3 cut(s)	206, 703, 1084
DinI	GGCGCC	1 cut(s)	483
DpnI	GATC	4 cut(s)	26, 76, 448, 1134
DpnII	GATC	4 cut(s)	24, 74, 446, 1132
DraIII	CACNNNGTG	1 cut(s)	929
DrdI	GACNNNNNNGTC	2 cut(s)	551, 728
DseDI	GACNNNNNNGTC	2 cut(s)	551, 728
EaeI	YGGCCR	2 cut(s)	664, 793
Eam1104I	CTCTTC	3 cut(s)	772, 1081, 1152
EarI	CTCTTC	3 cut(s)	772, 1081, 1152
EciI	GGCGGA	3 cut(s)	78, 138, 276
Eco130I	CCWWGG	1 cut(s)	57
Eco47III	AGCGCT	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	1071
EcoRII	CCWGG	4 cut(s)	492, 566, 828, 872
EcoT14I	CCWWGG	1 cut(s)	57
EgeI	GGCGCC	1 cut(s)	483
EheI	GGCGCC	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	4 cut(s)	61, 73, 262, 526
FaiI	YATR	9 cut(s)	59, 71, 201, 260, 524, 837, 954, 984, 1110
FaqI	GGGAC	2 cut(s)	531, 1004
FatI	CATG	4 cut(s)	57, 69, 258, 522
FauI	CCCGC	1 cut(s)	132
FblI	GTMKAC	1 cut(s)	293
FokI	GGATG	4 cut(s)	169, 548, 767, 849
FspBI	CTAG	3 cut(s)	978, 1029, 1068
GlaI	GCGC	2 cut(s)	38, 483
GsaI	CCCAGC	2 cut(s)	1025, 1148
GsuI	CTGGAG	1 cut(s)	515
HaeII	RGCGCY	2 cut(s)	40, 485
HaeIII	GGCC	7 cut(s)	56, 299, 305, 500, 666, 795, 1073
HapII	CCGG	8 cut(s)	173, 232, 302, 308, 314, 334, 439, 691
HhaI	GCGC	2 cut(s)	39, 484
Hin1I	GRCGYC	2 cut(s)	482, 552
Hin1II	CATG	4 cut(s)	61, 73, 262, 526
Hin6I	GCGC	2 cut(s)	37, 482
HinP1I	GCGC	2 cut(s)	37, 482
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	8 cut(s)	139, 193, 228, 389, 416, 687, 743, 911
HpaII	CCGG	8 cut(s)	173, 232, 302, 308, 314, 334, 439, 691
HphI	GGTGA	2 cut(s)	478, 1138
Hpy166II	GTNNAC	2 cut(s)	294, 946
Hpy188I	TCNGA	4 cut(s)	227, 327, 748, 1183
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	2 cut(s)	294, 946
Hpy99I	CGWCG	8 cut(s)	382, 385, 459, 462, 551, 554, 557, 719
HpyAV	CCTTC	2 cut(s)	153, 934
HpyCH4IV	ACGT	4 cut(s)	454, 552, 723, 1092
HpyCH4V	TGCA	7 cut(s)	21, 30, 262, 277, 630, 946, 1103
HpyF3I	CTNAG	3 cut(s)	206, 703, 1084
HpySE526I	ACGT	4 cut(s)	454, 552, 723, 1092
Hsp92I	GRCGYC	2 cut(s)	482, 552
Hsp92II	CATG	4 cut(s)	61, 73, 262, 526
HspAI	GCGC	2 cut(s)	37, 482
KasI	GGCGCC	1 cut(s)	481
Kpn2I	TCCGGA	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	24, 74, 446, 1132
LmnI	GCTCC	5 cut(s)	102, 316, 376, 508, 859
LweI	GCATC	2 cut(s)	264, 871
MaeI	CTAG	3 cut(s)	978, 1029, 1068
MaeII	ACGT	4 cut(s)	454, 552, 723, 1092
MalI	GATC	4 cut(s)	26, 76, 448, 1134
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	4 cut(s)	24, 74, 446, 1132
MflI	RGATCY	3 cut(s)	24, 74, 446
MhlI	GDGCHC	2 cut(s)	936, 948
MluCI	AATT	1 cut(s)	1176
Mly113I	GGCGCC	1 cut(s)	482
MlyI	GAGTC	5 cut(s)	133, 187, 383, 425, 696
MroI	TCCGGA	1 cut(s)	231
MroXI	GAANNNNTTC	1 cut(s)	638
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	157, 1025
MspI	CCGG	8 cut(s)	173, 232, 302, 308, 314, 334, 439, 691
MspR9I	CCNGG	8 cut(s)	302, 308, 335, 439, 494, 568, 830, 874
Mva1269I	GAATGC	1 cut(s)	890
MvaI	CCWGG	4 cut(s)	494, 568, 830, 874
NarI	GGCGCC	1 cut(s)	482
NciI	CCSGG	4 cut(s)	302, 308, 335, 439
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	4 cut(s)	24, 74, 446, 1132
NlaIII	CATG	4 cut(s)	61, 73, 262, 526
NlaIV	GGNNCC	6 cut(s)	300, 306, 312, 372, 483, 695
NmeAIII	GCCGAG	3 cut(s)	371, 529, 639
PaqCI	CACCTGC	1 cut(s)	26
PasI	CCCWGGG	1 cut(s)	873
PcsI	WCGNNNNNNNCGW	2 cut(s)	552, 720
PctI	GAATGC	1 cut(s)	890
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	3 cut(s)	228, 743, 911
PflFI	GACNNNGTC	1 cut(s)	551
PleI	GAGTC	5 cut(s)	133, 187, 383, 424, 695
PluTI	GGCGCC	1 cut(s)	485
PpsI	GAGTC	5 cut(s)	133, 187, 383, 424, 695
PsiI	TTATAA	2 cut(s)	954, 984
Psp6I	CCWGG	4 cut(s)	492, 566, 828, 872
PspFI	CCCAGC	2 cut(s)	1021, 1144
PspGI	CCWGG	4 cut(s)	492, 566, 828, 872
PspN4I	GGNNCC	6 cut(s)	300, 306, 312, 372, 483, 695
PspPI	GGNCC	3 cut(s)	298, 304, 1071
PsuI	RGATCY	3 cut(s)	24, 74, 446
PsyI	GACNNNGTC	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	1025
RsaI	GTAC	4 cut(s)	332, 586, 614, 1036
RsaNI	GTAC	4 cut(s)	331, 585, 613, 1035
RseI	CAYNNNNRTG	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	239
Sau3AI	GATC	4 cut(s)	24, 74, 446, 1132
Sau96I	GGNCC	3 cut(s)	298, 304, 1071
ScaI	AGTACT	1 cut(s)	586
SchI	GAGTC	5 cut(s)	133, 187, 383, 425, 696
ScrFI	CCNGG	8 cut(s)	302, 308, 335, 439, 494, 568, 830, 874
SduI	GDGCHC	2 cut(s)	936, 948
SfaNI	GCATC	2 cut(s)	264, 871
SfoI	GGCGCC	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	263
SpeI	ACTAGT	1 cut(s)	977
Sse9I	AATT	1 cut(s)	1176
SspDI	GGCGCC	1 cut(s)	481
SspMI	CTAG	3 cut(s)	978, 1029, 1068
StyD4I	CCNGG	8 cut(s)	300, 306, 333, 437, 492, 566, 828, 872
StyI	CCWWGG	1 cut(s)	57
TaiI	ACGT	4 cut(s)	457, 555, 726, 1095
TaqI	TCGA	4 cut(s)	191, 383, 1164, 1172
TasI	AATT	1 cut(s)	1176
TatI	WGTACW	2 cut(s)	584, 612
TfiI	GAWTC	3 cut(s)	228, 743, 911
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	1 cut(s)	808
TspDTI	ATGAA	3 cut(s)	171, 546, 550
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	808
Tth111I	GACNNNGTC	1 cut(s)	551
VneI	GTGCAC	1 cut(s)	944
XcmI	CCANNNNNNNNNTGG	1 cut(s)	836
XmiI	GTMKAC	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	3 cut(s)	978, 1029, 1068
ZraI	GACGTC	1 cut(s)	553
ZrmI	AGTACT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.