Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012250

Physical Location & Seq

Genomic Coordinates Forward (+)

49317677 .. 49322672

Gene Structure 4996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0380800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTGGCCTTCATATCTGCTGTTTAACAAGAGGGAAGATGTAGAAGCATCAGATGGTGAAAATTCTGATTTGGTAGAATCATACCCATGTGAACAGTCACCGAGAGATGGCAAATGTCATCTTTCTGCCTTGCCATGCTCGCACTTTGTTGAAGTCCCACACATAAACCAGCTATATTCTTGGGATTGTGGCCTCGCCTGCGTTCTGATGGTTTTTAGGACCGTTGGCGTTGATAGCTGCGATATTCAGACATTGGCAGAGCTTTGTTGCACAAATAGCATTTGGACTGTTGATCTAGCATATCTGTTACAAAAGTTCTCTGTTAGTTTTTCCTACTACACAGTAACATTTGGAGCAAACCCAAACTATTCTGGCGAGACATTTTACAAGGAGCAATTACCTAATGATTTGGTTCGAGTTGATACACTATTTCAAAAAGCACTGGAAGCTGGAATTAGGATAAAGTGCAGGTCAGTCGGTCAAGAAGAAATTTGTTTCTTGATTCTCTGTGGGAAATACATTGCCATAGTACTGGTTGATCAGTATAAGTTGAGCCCATCTAGTCAGGACAATGTTTTTATCTCAGACCGTTGTGGGAGCAACTCTGATTACACAGGTCATTATGTGATCATATGTGGGTATGACACTGCTACGGATGAGTTTGAGATTAGAGATCCGGCCTGTTCAAGGAAACATGAAAAAGTATCGTCAACATGCTTAGAAGCAGCCCGTAAATCCTTTGGTACTGATGAAGATCTTCTCTTGATCTCTTTGAGGAAGAGTAGGAAGCCAGATAGCCCCTCAATACAACTTTCTCGGAATGATAATATTAATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010016 GO:0010065 GO:0010067 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010346 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071944 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

279

Amino Acids

31.42

Weight (kDa)

4.88

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C39_2	PF13529	51 - 227	2.6e-06	Peptidase_C39 like family
Guanylate_cyc_2	PF09778	52 - 256	1.3e-74	Guanylylate cyclase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61480
fragaria_vesca	FvH4_7g27270
malus_domestica	MD01G1181700.v1.1 MD07G1251900.v1.1
prunus_persica	Prupe.2G275500_v2.0.a1
pyrus_communis	pycom01g19150 pycom07g22430
rosa_chinensis	RchiOBHm_Chr1g0374101
rosa_laevigata	RLG00000026763
rosa_multiflora	Rmu_co8312173.1_g000001 Rmu_co8440105.1_g000001 Rmu_sc0006924.1_g000013
rosa_roxburghii	Rroxscaffold_4G00283740
rosa_rugosa	Rorug01G0380800
rosa_samantha	Rh1AG391500 Rh1BG355500 Rh1CG368500 Rh1DG386200
rosa_wichuraiana	Rw1G034410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	459
AclWI	GGATC	1 cut(s)	668
AcsI	RAATTY	2 cut(s)	61, 489
AfaI	GTAC	2 cut(s)	531, 745
AfiI	CCNNNNNNNGG	2 cut(s)	107, 687
AgsI	TTSAA	3 cut(s)	152, 434, 687
AluBI	AGCT	4 cut(s)	172, 237, 262, 449
AluI	AGCT	4 cut(s)	172, 237, 262, 449
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	1 cut(s)	668
AoxI	GGCC	3 cut(s)	5, 190, 678
ApeKI	GCWGC	2 cut(s)	237, 725
ApoI	RAATTY	2 cut(s)	61, 489
AseI	ATTAAT	1 cut(s)	831
Asp700I	GAANNNNTTC	1 cut(s)	756
AspS9I	GGNCC	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	68, 90
AvaII	GGWCC	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	557
BbvI	GCAGC	2 cut(s)	224, 737
BccI	CCATC	4 cut(s)	47, 101, 202, 565
BcgI	CGANNNNNNTGC	2 cut(s)	457, 491
BclI	TGATCA	2 cut(s)	538, 627
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	2 cut(s)	296, 561
BfuAI	ACCTGC	1 cut(s)	459
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	2 cut(s)	238, 726
BlsI	GCNGC	2 cut(s)	239, 727
BmcAI	AGTACT	1 cut(s)	531
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmsI	GCATC	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	753
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 687
Bse1I	ACTGG	2 cut(s)	447, 537
Bse3DI	GCAATG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	753
BseGI	GGATG	1 cut(s)	661
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	2 cut(s)	107, 687
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	597
BseNI	ACTGG	2 cut(s)	447, 537
BseXI	GCAGC	2 cut(s)	224, 737
BsgI	GTGCAG	1 cut(s)	487
BshFI	GGCC	3 cut(s)	7, 192, 680
BsiSI	CCGG	1 cut(s)	677
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	107, 687
BsmAI	GTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	3 cut(s)	7, 192, 680
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	6 cut(s)	292, 538, 627, 673, 754, 765
BspANI	GGCC	3 cut(s)	7, 192, 680
BspCNI	CTCAG	1 cut(s)	596
BspMI	ACCTGC	1 cut(s)	459
BspPI	GGATC	1 cut(s)	668
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	2 cut(s)	447, 537
BssMI	GATC	6 cut(s)	292, 538, 627, 673, 754, 765
Bst4CI	ACNGT	5 cut(s)	96, 223, 289, 343, 590
Bst6I	CTCTTC	1 cut(s)	773
BstC8I	GCNNGC	2 cut(s)	140, 199
BstDEI	CTNAG	2 cut(s)	583, 718
BstENI	CCTNNNNNAGG	1 cut(s)	685
BstF5I	GGATG	1 cut(s)	661
BstKTI	GATC	6 cut(s)	295, 541, 630, 676, 757, 768
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	6 cut(s)	292, 538, 627, 673, 754, 765
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 198, 234, 276, 446
BstNSI	RCATGY	1 cut(s)	717
BstV1I	GCAGC	2 cut(s)	224, 737
BstX2I	RGATCY	2 cut(s)	673, 754
BstXI	CCANNNNNNTGG	1 cut(s)	532
BstYI	RGATCY	2 cut(s)	673, 754
BsuRI	GGCC	3 cut(s)	7, 192, 680
BtsCI	GGATG	1 cut(s)	661
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	2 cut(s)	440, 645
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	140, 199
Cfr13I	GGNCC	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	530, 744
CviAII	CATG	4 cut(s)	87, 135, 695, 714
CviQI	GTAC	2 cut(s)	530, 744
DdeI	CTNAG	2 cut(s)	583, 718
DpnI	GATC	6 cut(s)	294, 540, 629, 675, 756, 767
DpnII	GATC	6 cut(s)	292, 538, 627, 673, 754, 765
Eam1104I	CTCTTC	1 cut(s)	773
EarI	CTCTTC	1 cut(s)	773
Eco24I	GRGCYC	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	685
EcoT38I	GRGCYC	1 cut(s)	557
FaeI	CATG	4 cut(s)	90, 138, 698, 717
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	4 cut(s)	86, 134, 694, 713
FauNDI	CATATG	1 cut(s)	632
FbaI	TGATCA	2 cut(s)	538, 627
Fnu4HI	GCNGC	2 cut(s)	238, 726
FokI	GGATG	1 cut(s)	668
FriOI	GRGCYC	1 cut(s)	557
Fsp4HI	GCNGC	2 cut(s)	238, 726
FspBI	CTAG	2 cut(s)	296, 561
GluI	GCNGC	2 cut(s)	238, 726
HaeIII	GGCC	3 cut(s)	7, 192, 680
HapII	CCGG	1 cut(s)	677
Hin1II	CATG	4 cut(s)	90, 138, 698, 717
HincII	GTYRAC	1 cut(s)	711
HindII	GTYRAC	1 cut(s)	711
HinfI	GANTC	2 cut(s)	77, 502
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	2 cut(s)	68, 90
Hpy166II	GTNNAC	2 cut(s)	92, 711
Hpy188I	TCNGA	7 cut(s)	52, 67, 207, 249, 586, 607, 819
Hpy188III	TCNNGA	5 cut(s)	482, 499, 566, 763, 837
Hpy8I	GTNNAC	2 cut(s)	92, 711
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	5 cut(s)	96, 223, 289, 343, 590
HpyCH4V	TGCA	2 cut(s)	270, 468
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 198, 234, 276, 446
HpyF3I	CTNAG	2 cut(s)	583, 718
Hsp92II	CATG	4 cut(s)	90, 138, 698, 717
Ksp22I	TGATCA	2 cut(s)	538, 627
Kzo9I	GATC	6 cut(s)	292, 538, 627, 673, 754, 765
LmnI	GCTCC	3 cut(s)	353, 391, 597
Lsp1109I	GCAGC	2 cut(s)	224, 737
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	2 cut(s)	296, 561
MaeIII	GTNAC	3 cut(s)	96, 306, 343
MalI	GATC	6 cut(s)	294, 540, 629, 675, 756, 767
MboI	GATC	6 cut(s)	292, 538, 627, 673, 754, 765
MboII	GAAGA	5 cut(s)	47, 497, 749, 764, 790
MflI	RGATCY	2 cut(s)	673, 754
MhlI	GDGCHC	1 cut(s)	557
MluCI	AATT	5 cut(s)	61, 395, 453, 489, 832
MnlI	CCTC	4 cut(s)	24, 203, 768, 811
MroXI	GAANNNNTTC	1 cut(s)	756
MseI	TTAA	2 cut(s)	24, 831
MslI	CAYNNNNRTG	1 cut(s)	85
MspI	CCGG	1 cut(s)	677
MwoI	GCNNNNNNNGC	5 cut(s)	139, 198, 234, 276, 446
NdeI	CATATG	1 cut(s)	632
NdeII	GATC	6 cut(s)	292, 538, 627, 673, 754, 765
NlaIII	CATG	4 cut(s)	90, 138, 698, 717
NmuCI	GTSAC	1 cut(s)	96
NspI	RCATGY	1 cut(s)	717
PdmI	GAANNNNTTC	1 cut(s)	756
PfeI	GAWTC	2 cut(s)	77, 502
PkrI	GCNGC	2 cut(s)	239, 727
PshBI	ATTAAT	1 cut(s)	831
PspPI	GGNCC	1 cut(s)	219
PsuI	RGATCY	2 cut(s)	673, 754
RsaI	GTAC	2 cut(s)	531, 745
RsaNI	GTAC	2 cut(s)	530, 744
RseI	CAYNNNNRTG	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	24, 831
SatI	GCNGC	2 cut(s)	238, 726
Sau3AI	GATC	6 cut(s)	292, 538, 627, 673, 754, 765
Sau96I	GGNCC	1 cut(s)	219
ScaI	AGTACT	1 cut(s)	531
SduI	GDGCHC	1 cut(s)	557
SetI	ASST	7 cut(s)	174, 239, 264, 403, 451, 473, 619
SfaNI	GCATC	1 cut(s)	56
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	85
Sse9I	AATT	5 cut(s)	61, 395, 453, 489, 832
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	2 cut(s)	296, 561
TaaI	ACNGT	5 cut(s)	96, 223, 289, 343, 590
TaqI	TCGA	1 cut(s)	415
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	5 cut(s)	61, 395, 453, 489, 832
TatI	WGTACW	1 cut(s)	529
TfiI	GAWTC	2 cut(s)	77, 502
Tru1I	TTAA	2 cut(s)	24, 831
Tru9I	TTAA	2 cut(s)	24, 831
TscAI	CASTG	2 cut(s)	447, 652
TseFI	GTSAC	1 cut(s)	96
TseI	GCWGC	2 cut(s)	237, 725
Tsp45I	GTSAC	1 cut(s)	96
TspDTI	ATGAA	2 cut(s)	711, 765
TspGWI	ACGGA	1 cut(s)	668
TspRI	CASTG	2 cut(s)	447, 652
VpaK11BI	GGWCC	1 cut(s)	219
VspI	ATTAAT	1 cut(s)	831
XagI	CCTNNNNNAGG	1 cut(s)	685
XapI	RAATTY	2 cut(s)	61, 489
XceI	RCATGY	1 cut(s)	717
XmnI	GAANNNNTTC	1 cut(s)	756
XspI	CTAG	2 cut(s)	296, 561
ZrmI	AGTACT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.