Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8312173.1

Orthogroup ID

OG0012250

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 923

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8312173.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 923 bp

accatcccctcgaatttcgagaattgcagaacgctggagacctttaacgtctcgtttaatctgttaaccggtcctattccgtcttccggtgcgatcttcccgaaccttcatcccacgtcgttttccgggaatgaggggctatgcggcgccgttttggccaagccgtgcgcggcggatactctaacggctggagctgttgaggttgatggtcacgagcagccgaagaagacggccggcgcgattgtgtggatcatggcggcggcgttcgggatcggtctcttcgtcctcgtcgccgggacgaggtgcttccacgcgagctacagccgtcggatggaggatagcccccagatcggaccgtggaaattgaccgccttccagcgtttgaatttcacggcggaggatgtgctggagtgtttgcagatgagcgataaggtgatagggatgggtgggaccgggacggtgtataaggcggagatgccaggtggggagatcatagcggtgaagaagctgtgggggaagcagaaggagagcataatccgacggcggagaggggtgctggccgaggtggaggtgttggggaacgtgaggcataggaatatagtgagattgttagggtgctgctgcaacagggactgcaccatgctgctctacgagtacatgcccaatggcaacttggacgacttgttgcatggcaagaacaaggcccagaatttgggcgcggattgggtcacgaggtacaagattgccctcggtgtcgcccaagggatttgctacttacatcacgactgtgatccggtgatcgtccaccgcgatctcaagccgagtaacatcctcttggacggtgacatggaggcgagagtggcggactttggggtggctaagctgatccagagcgatgagtccatgtcggtgatcgccggttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010016 GO:0010065 GO:0010067 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010346 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071944 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

308

Amino Acids

33.47

Weight (kDa)

6.67

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61480
fragaria_vesca	FvH4_7g27270
malus_domestica	MD01G1181700.v1.1 MD07G1251900.v1.1
prunus_persica	Prupe.2G275500_v2.0.a1
pyrus_communis	pycom01g19150 pycom07g22430
rosa_chinensis	RchiOBHm_Chr1g0374101
rosa_laevigata	RLG00000026763
rosa_multiflora	Rmu_co8312173.1_g000001 Rmu_co8440105.1_g000001 Rmu_sc0006924.1_g000013
rosa_roxburghii	Rroxscaffold_4G00283740
rosa_rugosa	Rorug01G0380800
rosa_samantha	Rh1AG391500 Rh1BG355500 Rh1CG368500 Rh1DG386200
rosa_wichuraiana	Rw1G034410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	712
AccII	CGCG	5 cut(s)	170, 239, 314, 719, 810
AclWI	GGATC	4 cut(s)	257, 278, 785, 880
AcoI	YGGCCR	3 cut(s)	156, 231, 558
AcsI	RAATTY	3 cut(s)	13, 385, 709
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	2 cut(s)	656, 737
AfiI	CCNNNNNNNGG	5 cut(s)	86, 300, 331, 350, 712
AgeI	ACCGGT	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	385
AjiI	CACGTC	1 cut(s)	117
AjnI	CCWGG	1 cut(s)	478
AleI	CACNNNNGTG	1 cut(s)	786
AluBI	AGCT	4 cut(s)	194, 318, 508, 883
AluI	AGCT	4 cut(s)	194, 318, 508, 883
Alw26I	GTCTC	3 cut(s)	32, 55, 281
AlwI	GGATC	4 cut(s)	257, 278, 785, 880
AlwNI	CAGNNNCTG	1 cut(s)	633
AoxI	GGCC	4 cut(s)	156, 231, 558, 702
ApeKI	GCWGC	4 cut(s)	217, 618, 621, 643
ApoI	RAATTY	3 cut(s)	13, 385, 709
AsiGI	ACCGGT	1 cut(s)	68
AspLEI	GCGC	4 cut(s)	149, 170, 239, 719
AspS9I	GGNCC	4 cut(s)	71, 353, 450, 703
AsuC2I	CCSGG	3 cut(s)	127, 295, 454
AsuHPI	GGTGA	5 cut(s)	445, 511, 808, 854, 922
AvaII	GGWCC	3 cut(s)	71, 353, 450
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	146
BauI	CACGAG	2 cut(s)	212, 730
BbsI	GAAGAC	2 cut(s)	75, 233
BbvI	GCAGC	4 cut(s)	229, 605, 608, 630
BccI	CCATC	4 cut(s)	11, 200, 325, 436
BceAI	ACGGC	7 cut(s)	134, 148, 201, 246, 309, 408, 557
BciT130I	CCWGG	1 cut(s)	480
BciVI	GTATCC	1 cut(s)	169
BcnI	CCSGG	3 cut(s)	127, 295, 454
BcoDI	GTCTC	3 cut(s)	32, 55, 281
BfmI	CTRYAG	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	169
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	8 cut(s)	145, 171, 218, 258, 261, 619, 622, 644
BlpI	GCTNAGC	1 cut(s)	879
BlsI	GCNGC	8 cut(s)	146, 172, 219, 259, 262, 620, 623, 645
Bme1390I	CCNGG	4 cut(s)	127, 295, 454, 480
Bme18I	GGWCC	3 cut(s)	71, 353, 450
BmgBI	CACGTC	1 cut(s)	117
BmgT120I	GGNCC	4 cut(s)	71, 353, 450, 703
BmiI	GGNNCC	2 cut(s)	148, 451
BmrFI	CCNGG	4 cut(s)	127, 295, 454, 480
BmsI	GCATC	1 cut(s)	465
BpiI	GAAGAC	2 cut(s)	75, 233
BpmI	CTGGAG	3 cut(s)	56, 210, 428
Bpu1102I	GCTNAGC	1 cut(s)	879
BpuEI	CTTGAG	1 cut(s)	800
BpuMI	CCSGG	3 cut(s)	127, 295, 454
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	2 cut(s)	32, 281
BsaJI	CCNNGG	4 cut(s)	356, 561, 748, 760
BsaWI	WCCGGW	3 cut(s)	68, 86, 793
Bsc4I	CCNNNNNNNGG	5 cut(s)	86, 300, 331, 350, 712
Bse118I	RCCGGY	3 cut(s)	68, 233, 917
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	4 cut(s)	356, 561, 748, 760
BseGI	GGATG	5 cut(s)	109, 336, 406, 447, 828
BseLI	CCNNNNNNNGG	5 cut(s)	86, 300, 331, 350, 712
BseX3I	CGGCCG	1 cut(s)	231
BseXI	GCAGC	4 cut(s)	229, 605, 608, 630
BsgI	GTGCAG	1 cut(s)	619
Bsh1236I	CGCG	5 cut(s)	170, 239, 314, 719, 810
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	4 cut(s)	158, 233, 560, 704
BshNI	GGYRCC	1 cut(s)	146
BshTI	ACCGGT	1 cut(s)	68
BsiEI	CGRYCG	1 cut(s)	234
BsiSI	CCGG	8 cut(s)	69, 87, 126, 234, 294, 453, 794, 918
BslFI	GGGAC	4 cut(s)	310, 463, 469, 644
BslI	CCNNNNNNNGG	5 cut(s)	86, 300, 331, 350, 712
BsmAI	GTCTC	3 cut(s)	32, 55, 281
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	4 cut(s)	310, 463, 469, 644
BsnI	GGCC	4 cut(s)	158, 233, 560, 704
Bso31I	GGTCTC	2 cut(s)	32, 281
Bsp1720I	GCTNAGC	1 cut(s)	879
BspANI	GGCC	4 cut(s)	158, 233, 560, 704
BspFNI	CGCG	5 cut(s)	170, 239, 314, 719, 810
BspLI	GGNNCC	2 cut(s)	148, 451
BspPI	GGATC	4 cut(s)	257, 278, 785, 880
BspT107I	GGYRCC	1 cut(s)	146
BspTNI	GGTCTC	2 cut(s)	32, 281
BsrFI	RCCGGY	3 cut(s)	68, 233, 917
BssAI	RCCGGY	3 cut(s)	68, 233, 917
BssECI	CCNNGG	4 cut(s)	356, 561, 748, 760
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	2 cut(s)	212, 730
BssT1I	CCWWGG	1 cut(s)	760
Bst2BI	CACGAG	2 cut(s)	212, 730
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	4 cut(s)	357, 460, 788, 842
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	235, 316, 558
BstDEI	CTNAG	1 cut(s)	879
BstDSI	CCRYGG	1 cut(s)	356
BstF5I	GGATG	5 cut(s)	109, 336, 406, 447, 828
BstFNI	CGCG	5 cut(s)	170, 239, 314, 719, 810
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	4 cut(s)	149, 170, 239, 719
BstMAI	GTCTC	3 cut(s)	32, 55, 281
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 860
BstNI	CCWGG	1 cut(s)	480
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	4 cut(s)	125, 293, 452, 478
BstSFI	CTRYAG	1 cut(s)	319
BstUI	CGCG	5 cut(s)	170, 239, 314, 719, 810
BstV1I	GCAGC	4 cut(s)	229, 605, 608, 630
BstV2I	GAAGAC	2 cut(s)	75, 233
BstZI	CGGCCG	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	4 cut(s)	158, 233, 560, 704
BtgI	CCRYGG	1 cut(s)	356
BtgZI	GCGATG	1 cut(s)	909
BtrI	CACGTC	1 cut(s)	117
BtsCI	GGATG	5 cut(s)	109, 336, 406, 447, 828
Cac8I	GCNNGC	3 cut(s)	235, 316, 558
CaiI	CAGNNNCTG	1 cut(s)	633
CfoI	GCGC	4 cut(s)	149, 170, 239, 719
Cfr10I	RCCGGY	3 cut(s)	68, 233, 917
Cfr13I	GGNCC	4 cut(s)	71, 353, 450, 703
CpoI	CGGWCCG	1 cut(s)	353
Csp6I	GTAC	2 cut(s)	655, 736
CspAI	ACCGGT	1 cut(s)	68
CspI	CGGWCCG	1 cut(s)	353
CviAII	CATG	6 cut(s)	253, 640, 658, 689, 847, 904
CviQI	GTAC	2 cut(s)	655, 736
DdeI	CTNAG	1 cut(s)	879
DinI	GGCGCC	1 cut(s)	148
EaeI	YGGCCR	3 cut(s)	156, 231, 558
EagI	CGGCCG	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
EciI	GGCGGA	5 cut(s)	188, 410, 485, 559, 878
EclXI	CGGCCG	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	760
Eco31I	GGTCTC	2 cut(s)	32, 281
Eco47I	GGWCC	3 cut(s)	71, 353, 450
Eco52I	CGGCCG	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	760
EgeI	GGCGCC	1 cut(s)	148
EheI	GGCGCC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	760
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	6 cut(s)	256, 643, 661, 692, 850, 907
FaqI	GGGAC	4 cut(s)	310, 463, 469, 644
FatI	CATG	6 cut(s)	252, 639, 657, 688, 846, 903
Fnu4HI	GCNGC	8 cut(s)	145, 171, 218, 258, 261, 619, 622, 644
FokI	GGATG	5 cut(s)	96, 343, 413, 454, 815
Fsp4HI	GCNGC	8 cut(s)	145, 171, 218, 258, 261, 619, 622, 644
GlaI	GCGC	4 cut(s)	148, 169, 238, 718
GluI	GCNGC	8 cut(s)	145, 171, 218, 258, 261, 619, 622, 644
GsuI	CTGGAG	3 cut(s)	56, 210, 428
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	4 cut(s)	158, 233, 560, 704
HapII	CCGG	8 cut(s)	69, 87, 126, 234, 294, 453, 794, 918
HhaI	GCGC	4 cut(s)	149, 170, 239, 719
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	6 cut(s)	256, 643, 661, 692, 850, 907
Hin6I	GCGC	4 cut(s)	147, 168, 237, 717
HinP1I	GCGC	4 cut(s)	147, 168, 237, 717
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	899
HpaI	GTTAAC	1 cut(s)	66
HpaII	CCGG	8 cut(s)	69, 87, 126, 234, 294, 453, 794, 918
HphI	GGTGA	5 cut(s)	445, 511, 808, 854, 922
Hpy166II	GTNNAC	2 cut(s)	66, 805
Hpy188I	TCNGA	3 cut(s)	330, 353, 539
Hpy188III	TCNNGA	7 cut(s)	19, 100, 212, 268, 730, 782, 889
Hpy8I	GTNNAC	2 cut(s)	66, 805
Hpy99I	CGWCG	4 cut(s)	121, 293, 330, 543
HpyAV	CCTTC	3 cut(s)	116, 382, 517
HpyCH4III	ACNGT	4 cut(s)	357, 460, 788, 842
HpyCH4IV	ACGT	3 cut(s)	48, 116, 582
HpyCH4V	TGCA	5 cut(s)	27, 418, 624, 636, 688
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 860
HpyF3I	CTNAG	1 cut(s)	879
HpySE526I	ACGT	3 cut(s)	48, 116, 582
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	6 cut(s)	256, 643, 661, 692, 850, 907
HspAI	GCGC	4 cut(s)	147, 168, 237, 717
KasI	GGCGCC	1 cut(s)	146
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
KspAI	GTTAAC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	4 cut(s)	229, 605, 608, 630
LweI	GCATC	1 cut(s)	465
MaeII	ACGT	3 cut(s)	48, 116, 582
MaeIII	GTNAC	4 cut(s)	209, 727, 824, 842
MboII	GAAGA	6 cut(s)	75, 88, 235, 238, 271, 514
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	5 cut(s)	13, 22, 362, 385, 709
MluNI	TGGCCA	1 cut(s)	158
Mly113I	GGCGCC	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	908
MmeI	TCCRAC	2 cut(s)	308, 562
Mox20I	TGGCCA	1 cut(s)	158
MroNI	GCCGGC	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	3 cut(s)	45, 57, 65
MslI	CAYNNNNRTG	3 cut(s)	497, 786, 908
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	8 cut(s)	69, 87, 126, 234, 294, 453, 794, 918
MspR9I	CCNGG	4 cut(s)	127, 295, 454, 480
MvaI	CCWGG	1 cut(s)	480
MvnI	CGCG	5 cut(s)	170, 239, 314, 719, 810
MwoI	GCNNNNNNNGC	2 cut(s)	155, 860
NaeI	GCCGGC	1 cut(s)	235
NarI	GGCGCC	1 cut(s)	147
NciI	CCSGG	3 cut(s)	127, 295, 454
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	6 cut(s)	256, 643, 661, 692, 850, 907
NlaIV	GGNNCC	2 cut(s)	148, 451
NmeAIII	GCCGAG	2 cut(s)	586, 846
NmuCI	GTSAC	3 cut(s)	209, 727, 842
NspI	RCATGY	1 cut(s)	661
OliI	CACNNNNGTG	1 cut(s)	786
PcsI	WCGNNNNNNNCGW	3 cut(s)	236, 279, 807
PdiI	GCCGGC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	712
PfoI	TCCNGGA	1 cut(s)	125
PinAI	ACCGGT	1 cut(s)	68
PkrI	GCNGC	8 cut(s)	146, 172, 219, 259, 262, 620, 623, 645
PleI	GAGTC	1 cut(s)	907
PluTI	GGCGCC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	907
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	2 cut(s)	148, 451
PspPI	GGNCC	4 cut(s)	71, 353, 450, 703
PstNI	CAGNNNCTG	1 cut(s)	633
RsaI	GTAC	2 cut(s)	656, 737
RsaNI	GTAC	2 cut(s)	655, 736
RseI	CAYNNNNRTG	3 cut(s)	497, 786, 908
Rsr2I	CGGWCCG	1 cut(s)	353
RsrII	CGGWCCG	1 cut(s)	353
SaqAI	TTAA	3 cut(s)	45, 57, 65
SatI	GCNGC	8 cut(s)	145, 171, 218, 258, 261, 619, 622, 644
Sau96I	GGNCC	4 cut(s)	71, 353, 450, 703
SchI	GAGTC	1 cut(s)	908
ScrFI	CCNGG	4 cut(s)	127, 295, 454, 480
SfaNI	GCATC	1 cut(s)	465
SfcI	CTRYAG	1 cut(s)	319
SfoI	GGCGCC	1 cut(s)	148
SinI	GGWCC	3 cut(s)	71, 353, 450
SmiMI	CAYNNNNRTG	3 cut(s)	497, 786, 908
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	5 cut(s)	13, 22, 362, 385, 709
SspDI	GGCGCC	1 cut(s)	146
StyD4I	CCNGG	4 cut(s)	125, 293, 452, 478
StyI	CCWWGG	1 cut(s)	760
TaaI	ACNGT	4 cut(s)	357, 460, 788, 842
TaiI	ACGT	3 cut(s)	51, 119, 585
TaqI	TCGA	2 cut(s)	11, 18
TaqII	GACCGA	1 cut(s)	263
TasI	AATT	5 cut(s)	13, 22, 362, 385, 709
TatI	WGTACW	1 cut(s)	654
TauI	GCSGC	4 cut(s)	147, 173, 260, 263
Tru1I	TTAA	3 cut(s)	45, 57, 65
Tru9I	TTAA	3 cut(s)	45, 57, 65
TseFI	GTSAC	3 cut(s)	209, 727, 842
TseI	GCWGC	4 cut(s)	217, 618, 621, 643
Tsp45I	GTSAC	3 cut(s)	209, 727, 842
TspDTI	ATGAA	1 cut(s)	98
TspGWI	ACGGA	1 cut(s)	69
Van91I	CCANNNNNTGG	1 cut(s)	712
VpaK11BI	GGWCC	3 cut(s)	71, 353, 450
XapI	RAATTY	3 cut(s)	13, 385, 709
XceI	RCATGY	1 cut(s)	661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.