Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8440105.1

Orthogroup ID

OG0012250

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1352

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8440105.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1351 bp

atgaaacctccctttcttcgctttctcttcttcttctctctcttctttcttcaagcatccatagtcctctgtgcttcaaattctgcaccttcccaactcagtgccttgctctccctcaaatcctcactcaaggatcctctctttacattcaatggctgggagagcaaggctaatactgaaggtccagtttggtgttcatggtctggaatcaaatgccaccccaacacatccctagtagtctctctagacctctctcaccgcaatctttccggtacaataccagctgaaattcgctacttgtcgagcttgattcacctaaacttgagcggaaacagctttgctggacttctgcaaccagccattttccaactcacccagctcagaatccttgacataagccacaacgacttcaacttaactttcccgcctgggatttccaagctcaagttcttgagggtcttcaatgcttacagcaacagcttcactggtcctttacctcaagaaatcatccgactcaggttcctcgagaagctcaaccttagtggaagctacttcgaaggtaatattccaccagggtatggaaatattccccaactccgggagcttggcctcgctggaaatgttcttaaaggcgcaataccacctcaactggggttgttatcagagctcactcgcatggagatcggctacaacggcttcacaggtgggcttccggtacaattgacattactatcaaacctcacctacttagacatctccaataacttgctttccgggtcactcccacctgagcttggcaatttaaccatgctcaacacattgttcctcttcaaaaaccaattttcgggcactatcccacccaccctcggaaacttacaagctctccaattcctcgacttatcagataatcagctttcgggttccatcccagccgccattgctacgctgaaacagctcaacaggctgagcttaatgaacaattttttagttggcgaaatcccatcccaaatcggagagcttccctacttggataccctccttctctggaacaactccctcacagggtccctcccccaaaacctcggctccaatgcgaagctcgtcctcgtcgacctctcttccaactccctcacaggtccaattcccccaactctctgcaaaggcaacacactcgtcaagctcatcctcttctcaaacagattcaccagccatcttccaccaaatttagccagttgtacatccttgttccgattccgcatccaaaacaaccaacttaacggctcaatccctcagggcttcggctccctccccaacctaaccttcttcgacctcagcaacaacagcttctccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010016 GO:0010065 GO:0010067 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010346 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071944 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

450

Amino Acids

49.16

Weight (kDa)

8.94

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61480
fragaria_vesca	FvH4_7g27270
malus_domestica	MD01G1181700.v1.1 MD07G1251900.v1.1
prunus_persica	Prupe.2G275500_v2.0.a1
pyrus_communis	pycom01g19150 pycom07g22430
rosa_chinensis	RchiOBHm_Chr1g0374101
rosa_laevigata	RLG00000026763
rosa_multiflora	Rmu_co8312173.1_g000001 Rmu_co8440105.1_g000001 Rmu_sc0006924.1_g000013
rosa_roxburghii	Rroxscaffold_4G00283740
rosa_rugosa	Rorug01G0380800
rosa_samantha	Rh1AG391500 Rh1BG355500 Rh1CG368500 Rh1DG386200
rosa_wichuraiana	Rw1G034410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	578
AccBSI	CCGCTC	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	1110
AciI	CCGC	5 cut(s)	259, 327, 425, 933, 1255
AclWI	GGATC	2 cut(s)	128, 141
AcsI	RAATTY	3 cut(s)	79, 288, 1222
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	3 cut(s)	274, 717, 1237
AfiI	CCNNNNNNNGG	8 cut(s)	578, 597, 598, 650, 794, 844, 866, 1062
AgsI	TTSAA	6 cut(s)	53, 78, 151, 412, 463, 832
AjnI	CCWGG	2 cut(s)	427, 571
AjuI	GAANNNNNNNTTGG	4 cut(s)	431, 463, 1304, 1336
Alw21I	GWGCWC	1 cut(s)	669
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	2 cut(s)	128, 141
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	1 cut(s)	607
ApoI	RAATTY	3 cut(s)	79, 288, 1222
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	4 cut(s)	182, 488, 1065, 1136
AsuC2I	CCSGG	2 cut(s)	599, 775
AsuHPI	GGTGA	5 cut(s)	248, 305, 364, 733, 1195
AsuII	TTCGAA	1 cut(s)	555
AvaI	CYCGRG	1 cut(s)	524
AvaII	GGWCC	4 cut(s)	182, 488, 1065, 1136
AxyI	CCTNAGG	1 cut(s)	1290
BaeGI	GKGCMC	1 cut(s)	851
BamHI	GGATCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	669
BbsI	GAAGAC	1 cut(s)	451
Bbv12I	GWGCWC	1 cut(s)	669
BbvCI	CCTCAGC	1 cut(s)	1331
BccI	CCATC	3 cut(s)	932, 1009, 1218
BceAI	ACGGC	2 cut(s)	709, 1294
BcgI	CGANNNNNNTGC	4 cut(s)	664, 698, 1153, 1187
BciT130I	CCWGG	2 cut(s)	429, 573
BciVI	GTATCC	1 cut(s)	1024
BcnI	CCSGG	2 cut(s)	599, 775
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	2 cut(s)	233, 245
BfuI	GTATCC	1 cut(s)	1024
BisI	GCNGC	1 cut(s)	933
BlpI	GCTNAGC	1 cut(s)	965
BlsI	GCNGC	1 cut(s)	934
Bme1390I	CCNGG	4 cut(s)	429, 573, 599, 775
Bme18I	GGWCC	4 cut(s)	182, 488, 1065, 1136
BmeT110I	CYCGRG	1 cut(s)	524
BmgT120I	GGNCC	4 cut(s)	182, 488, 1065, 1136
BmiI	GGNNCC	7 cut(s)	135, 521, 922, 1066, 1067, 1087, 1303
BmrFI	CCNGG	4 cut(s)	429, 573, 599, 775
BmrI	ACTGGG	1 cut(s)	659
BmsI	GCATC	2 cut(s)	65, 1266
BmuI	ACTGGG	1 cut(s)	659
BpiI	GAAGAC	1 cut(s)	451
Bpu10I	CCTNAGC	2 cut(s)	789, 1331
Bpu1102I	GCTNAGC	1 cut(s)	965
Bpu14I	TTCGAA	1 cut(s)	555
BpuEI	CTTGAG	5 cut(s)	113, 343, 428, 472, 483
BpuMI	CCSGG	2 cut(s)	599, 775
BsaJI	CCNNGG	4 cut(s)	428, 572, 865, 1081
BsaWI	WCCGGW	2 cut(s)	269, 712
BsaXI	ACNNNNNCTCC	5 cut(s)	867, 897, 1070, 1100, 1331
Bsc4I	CCNNNNNNNGG	8 cut(s)	578, 597, 598, 650, 794, 844, 866, 1062
Bse1I	ACTGG	4 cut(s)	185, 490, 654, 1230
Bse21I	CCTNAGG	1 cut(s)	1290
Bse3DI	GCAATG	1 cut(s)	936
BseBI	CCWGG	2 cut(s)	429, 573
BseDI	CCNNGG	4 cut(s)	428, 572, 865, 1081
BseGI	GGATG	8 cut(s)	56, 227, 507, 924, 1001, 1182, 1238, 1257
BseLI	CCNNNNNNNGG	8 cut(s)	578, 597, 598, 650, 794, 844, 866, 1062
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	7 cut(s)	112, 394, 529, 780, 956, 1304, 1345
BseNI	ACTGG	4 cut(s)	185, 490, 654, 1230
BseSI	GKGCMC	1 cut(s)	851
BseYI	CCCAGC	3 cut(s)	156, 375, 928
BsgI	GTGCAG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	609
BsiHKAI	GWGCWC	1 cut(s)	669
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	4 cut(s)	270, 598, 713, 774
BslFI	GGGAC	1 cut(s)	1051
BslI	CCNNNNNNNGG	8 cut(s)	578, 597, 598, 650, 794, 844, 866, 1062
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	1051
BsnI	GGCC	1 cut(s)	609
BsoBI	CYCGRG	1 cut(s)	524
Bsp119I	TTCGAA	1 cut(s)	555
Bsp1286I	GDGCHC	2 cut(s)	669, 851
Bsp1407I	TGTACA	1 cut(s)	1235
Bsp143I	GATC	2 cut(s)	133, 681
Bsp1720I	GCTNAGC	1 cut(s)	965
BspACI	CCGC	5 cut(s)	259, 327, 425, 933, 1255
BspANI	GGCC	1 cut(s)	609
BspCNI	CTCAG	7 cut(s)	111, 393, 528, 781, 957, 1303, 1344
BspLI	GGNNCC	7 cut(s)	135, 521, 922, 1066, 1067, 1087, 1303
BspPI	GGATC	2 cut(s)	128, 141
BspT104I	TTCGAA	1 cut(s)	555
BsrBI	CCGCTC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	936
BsrGI	TGTACA	1 cut(s)	1235
BsrI	ACTGG	4 cut(s)	185, 490, 654, 1230
BssECI	CCNNGG	4 cut(s)	428, 572, 865, 1081
BssMI	GATC	2 cut(s)	133, 681
Bst2UI	CCWGG	2 cut(s)	429, 573
Bst6I	CTCTTC	5 cut(s)	32, 47, 833, 1123, 1193
BstAUI	TGTACA	1 cut(s)	1235
BstBI	TTCGAA	1 cut(s)	555
BstDEI	CTNAG	9 cut(s)	98, 380, 515, 539, 748, 789, 965, 1290, 1331
BstF5I	GGATG	8 cut(s)	56, 227, 507, 924, 1001, 1182, 1238, 1257
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	2 cut(s)	136, 684
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	2 cut(s)	133, 681
BstMWI	GCNNNNNNNGC	7 cut(s)	162, 333, 693, 938, 952, 961, 1341
BstNI	CCWGG	2 cut(s)	429, 573
BstSCI	CCNGG	4 cut(s)	427, 571, 597, 773
BstSLI	GKGCMC	1 cut(s)	851
BstV2I	GAAGAC	1 cut(s)	451
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
Bsu36I	CCTNAGG	1 cut(s)	1290
BsuI	GTATCC	1 cut(s)	1024
BsuRI	GGCC	1 cut(s)	609
BtsCI	GGATG	8 cut(s)	56, 227, 507, 924, 1001, 1182, 1238, 1257
BtsIMutI	CAGTG	2 cut(s)	106, 483
CfoI	GCGC	1 cut(s)	635
Cfr13I	GGNCC	4 cut(s)	182, 488, 1065, 1136
Csp6I	GTAC	3 cut(s)	273, 716, 1236
CspCI	CAANNNNNGTGG	2 cut(s)	523, 558
CviAII	CATG	3 cut(s)	198, 676, 808
CviQI	GTAC	3 cut(s)	273, 716, 1236
DdeI	CTNAG	9 cut(s)	98, 380, 515, 539, 748, 789, 965, 1290, 1331
DpnI	GATC	2 cut(s)	135, 683
DpnII	GATC	2 cut(s)	133, 681
Eam1104I	CTCTTC	5 cut(s)	32, 47, 833, 1123, 1193
EarI	CTCTTC	5 cut(s)	32, 47, 833, 1123, 1193
Ecl136II	GAGCTC	1 cut(s)	667
Eco24I	GRGCYC	1 cut(s)	669
Eco47I	GGWCC	4 cut(s)	182, 488, 1065, 1136
Eco53kI	GAGCTC	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	198
Eco81I	CCTNAGG	1 cut(s)	1290
Eco88I	CYCGRG	1 cut(s)	524
EcoICRI	GAGCTC	1 cut(s)	667
EcoO109I	RGGNCCY	1 cut(s)	1065
EcoRII	CCWGG	2 cut(s)	427, 571
EcoT38I	GRGCYC	1 cut(s)	669
FaeI	CATG	3 cut(s)	201, 679, 811
FaiI	YATR	6 cut(s)	62, 199, 395, 579, 677, 809
FaqI	GGGAC	1 cut(s)	1051
FatI	CATG	3 cut(s)	197, 675, 807
FauI	CCCGC	1 cut(s)	432
FblI	GTMKAC	1 cut(s)	1110
Fnu4HI	GCNGC	1 cut(s)	933
FokI	GGATG	8 cut(s)	43, 214, 494, 911, 988, 1169, 1225, 1244
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	1 cut(s)	933
FspBI	CTAG	2 cut(s)	233, 245
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	1 cut(s)	933
GsaI	CCCAGC	3 cut(s)	160, 379, 932
HaeIII	GGCC	1 cut(s)	609
HapII	CCGG	4 cut(s)	270, 598, 713, 774
HhaI	GCGC	1 cut(s)	635
Hin1II	CATG	3 cut(s)	201, 679, 811
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HincII	GTYRAC	1 cut(s)	1111
HindII	GTYRAC	1 cut(s)	1111
HinfI	GANTC	6 cut(s)	207, 310, 384, 513, 1200, 1251
HpaII	CCGG	4 cut(s)	270, 598, 713, 774
HphI	GGTGA	5 cut(s)	248, 305, 364, 733, 1195
Hpy166II	GTNNAC	1 cut(s)	1111
Hpy188I	TCNGA	7 cut(s)	383, 512, 664, 869, 904, 1013, 1250
Hpy188III	TCNNGA	6 cut(s)	204, 245, 451, 500, 526, 1045
Hpy8I	GTNNAC	1 cut(s)	1111
Hpy99I	CGWCG	1 cut(s)	1112
HpyAV	CCTTC	5 cut(s)	99, 173, 551, 1049, 1330
HpyCH4V	TGCA	3 cut(s)	86, 352, 1158
HpyF10VI	GCNNNNNNNGC	7 cut(s)	162, 333, 693, 938, 952, 961, 1341
HpyF3I	CTNAG	9 cut(s)	98, 380, 515, 539, 748, 789, 965, 1290, 1331
Hsp92II	CATG	3 cut(s)	201, 679, 811
HspAI	GCGC	1 cut(s)	633
KflI	GGGWCCC	1 cut(s)	1065
Kzo9I	GATC	2 cut(s)	133, 681
LmnI	GCTCC	3 cut(s)	601, 1091, 1307
LweI	GCATC	2 cut(s)	65, 1266
MaeI	CTAG	2 cut(s)	233, 245
MaeIII	GTNAC	1 cut(s)	777
MalI	GATC	2 cut(s)	135, 683
MbiI	CCGCTC	1 cut(s)	327
MboI	GATC	2 cut(s)	133, 681
MfeI	CAATTG	1 cut(s)	719
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	2 cut(s)	669, 851
MluCI	AATT	9 cut(s)	79, 288, 719, 799, 839, 887, 979, 1140, 1222
MlyI	GAGTC	1 cut(s)	507
MmeI	TCCRAC	3 cut(s)	391, 535, 1146
MseI	TTAA	5 cut(s)	416, 627, 803, 971, 1275
MslI	CAYNNNNRTG	1 cut(s)	674
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	4 cut(s)	270, 598, 713, 774
MspR9I	CCNGG	4 cut(s)	429, 573, 599, 775
MunI	CAATTG	1 cut(s)	719
MvaI	CCWGG	2 cut(s)	429, 573
MwoI	GCNNNNNNNGC	7 cut(s)	162, 333, 693, 938, 952, 961, 1341
NciI	CCSGG	2 cut(s)	599, 775
NdeII	GATC	2 cut(s)	133, 681
NlaIII	CATG	3 cut(s)	201, 679, 811
NlaIV	GGNNCC	7 cut(s)	135, 521, 922, 1066, 1067, 1087, 1303
NmeAIII	GCCGAG	1 cut(s)	1062
NmuCI	GTSAC	1 cut(s)	777
NspV	TTCGAA	1 cut(s)	555
PaeR7I	CTCGAG	1 cut(s)	524
PcsI	WCGNNNNNNNCGW	1 cut(s)	1107
PfeI	GAWTC	5 cut(s)	207, 310, 384, 1200, 1251
PflMI	CCANNNNNTGG	1 cut(s)	578
PfoI	TCCNGGA	1 cut(s)	597
PkrI	GCNGC	1 cut(s)	934
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
PpuMI	RGGWCCY	1 cut(s)	1065
Psp124BI	GAGCTC	1 cut(s)	669
Psp5II	RGGWCCY	1 cut(s)	1065
Psp6I	CCWGG	2 cut(s)	427, 571
PspFI	CCCAGC	3 cut(s)	156, 375, 928
PspGI	CCWGG	2 cut(s)	427, 571
PspN4I	GGNNCC	7 cut(s)	135, 521, 922, 1066, 1067, 1087, 1303
PspPI	GGNCC	4 cut(s)	182, 488, 1065, 1136
PspPPI	RGGWCCY	1 cut(s)	1065
PsuI	RGATCY	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	3 cut(s)	274, 717, 1237
RsaNI	GTAC	3 cut(s)	273, 716, 1236
RseI	CAYNNNNRTG	1 cut(s)	674
SacI	GAGCTC	1 cut(s)	669
SalI	GTCGAC	1 cut(s)	1109
SaqAI	TTAA	5 cut(s)	416, 627, 803, 971, 1275
SatI	GCNGC	1 cut(s)	933
Sau3AI	GATC	2 cut(s)	133, 681
Sau96I	GGNCC	4 cut(s)	182, 488, 1065, 1136
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	4 cut(s)	429, 573, 599, 775
SduI	GDGCHC	2 cut(s)	669, 851
SfaNI	GCATC	2 cut(s)	65, 1266
Sfr274I	CTCGAG	1 cut(s)	524
SfuI	TTCGAA	1 cut(s)	555
SinI	GGWCC	4 cut(s)	182, 488, 1065, 1136
SlaI	CTCGAG	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	6 cut(s)	128, 322, 443, 451, 498, 524
SmoI	CTYRAG	6 cut(s)	128, 322, 443, 451, 498, 524
Sse9I	AATT	9 cut(s)	79, 288, 719, 799, 839, 887, 979, 1140, 1222
SsiI	CCGC	5 cut(s)	259, 327, 425, 933, 1255
SspI	AATATT	2 cut(s)	565, 586
SspMI	CTAG	2 cut(s)	233, 245
SstI	GAGCTC	1 cut(s)	669
StyD4I	CCNGG	4 cut(s)	427, 571, 597, 773
TaqI	TCGA	6 cut(s)	302, 525, 555, 894, 1110, 1326
TasI	AATT	9 cut(s)	79, 288, 719, 799, 839, 887, 979, 1140, 1222
TatI	WGTACW	1 cut(s)	1235
TauI	GCSGC	1 cut(s)	935
TfiI	GAWTC	5 cut(s)	207, 310, 384, 1200, 1251
Tru1I	TTAA	5 cut(s)	416, 627, 803, 971, 1275
Tru9I	TTAA	5 cut(s)	416, 627, 803, 971, 1275
TscAI	CASTG	2 cut(s)	106, 490
TseFI	GTSAC	1 cut(s)	777
Tsp45I	GTSAC	1 cut(s)	777
TspDTI	ATGAA	3 cut(s)	17, 186, 989
TspRI	CASTG	2 cut(s)	106, 490
Van91I	CCANNNNNTGG	1 cut(s)	578
VpaK11BI	GGWCC	4 cut(s)	182, 488, 1065, 1136
XapI	RAATTY	3 cut(s)	79, 288, 1222
XbaI	TCTAGA	1 cut(s)	244
XhoI	CTCGAG	1 cut(s)	524
XmiI	GTMKAC	1 cut(s)	1110
XspI	CTAG	2 cut(s)	233, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.