Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0012250

Physical Location & Seq

Genomic Coordinates Forward (+)

48669331 .. 48674280

Gene Structure 4950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG355500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3075 bp

ATGAAACTTCCCTTTCTTCGCTTTCTCTTCTTCTTCTTCTTCTCTCTCTTCTTTCTTCAAGCATCCATAGTCCTCTGTGCTTCAAATTCTGCACCTTCCCAACTCAGTGCCTTGCTCTCCCTCAAATCCTCACTCAAAGATCCTCTCTTTACATTCAATGGCTGGGAGAGCAAGGCTAATACTGAAGGTCCAGTTTGGTGTTCATGGTCTGGAATCAAATGCCACCCCAACACATCCCTAGTAGTCTCTCTAGACCTCTCTCACCGCAATCTTTCCGGTACAATACCAGCTGAAATTCGCTACTTGTCGAGCTTGATTCACCTAAACTTGAGCGGTAACAGCTTTGCTGGACCTCTGCAACCTGCCATTTTCCAACTCACCCAGCTCAGAATCCTTGACATAAGCCACAACGACTTCAACTTAACTTTCCCGCCTGGGATTTCCAAGCTCAAGTTCTTGAGGGTGTTCAATGCTTACAGCAACAGCTTCACCGGTCCTTTACCTCAAGAAATCATCCGACTCAGGTTCCTCGAGAAGCTCAACCTTAGTGGAAGCTACTTCGAAGGTAATATTCCACCAGGGTATGGAAATATTCCCCAACTCCGGGAGCTTGGCCTCGCTGGAAATGTTCTTAAAGGCGCAATACCACCTCAACTGGGGTTCTTATCAGAGCTCACTCGCATGGAGATCGGCTACAACGGCTTCACAGGTGGGCTTCCGGTACAATTGACATTACTATCAAACCTCACCTACTTAGACATCTCCAATAACTTGCTCTCCGGGTCACTCCCACCTGAGCTTGGCAATTTAACCATGCTCAACACATTGTTCCTCTTCAAAAACCAATTTTCGGGCACTATCCCACCCACCCTCGGAAACTTACAAGCTCTCCAATTCCTCGACTTATCAGAGAATCAGCTTTCGGGCTCCATCCCAGCCGCCATTGCTACACTAAAGCAGCTCAACAGGCTGAGCTTACTGAACAATTTTTTAGTTGGCGAAATACCATCCCAAATCGGAGAGCTTCCCTACTTGGAATCCCTGCTTCTCTGGAACAACTCCCTCACAGGAAACCTCCCCCAAAACCTCGGCACCAATGCGAAGCTCGTCGTCGTCGACCTCTCTTCCAACTCCCTCACAGGTCCAATCCCCCCAACTCTCTGCCAAGGCAACACACTCGTCAAGCTGATCCTCTTCTCAAACAGATTCACCAGCCATCTTCCACCAAATTTAGCCAGTTGCACATCCTTGTTCCGATTCCGCATCCAAAACAACCAACTCAACGGCTCAATCCCTCAGGGCTTCGGCTCCCTCCCGAACCTAACCTTCTTCGACCTCAGCAACAACAGCTTCTCCGGCCCCATCCCCTCCGATCTCGGCAATGCCGCGAAGCTCCAGTACCTAAACATCTCCCAGAACCCTCTCCACACACTCCTCCCATCAAACATCTGGGGCGCTGTTAATCTGCAGATATTCTCCGCCATTTCCAGCCACCTCACCGGAAAAATCCCCGACTTCATCGGCTGCAAGAGCGTCTACAAGATCGAATTACAACGCAACAACTTCACCGGCAGCATTCCCTGGGACATTGGCCACTGCGAGAAGCTTCTGAGCTTGAGCCTCAGCCGGAACTCACTCACCGGAATTATACCTTGGGAAATTTCAGCTCTGCCTTCCATAACCGACCTGGACCTCTCCTACAACTTCCTCTCCGGTACCATCCCCTCGAATTTCGAGAATTGCAGAACGCTGGAGACCTTTAACGTCTCGTTTAATCTGTTAACCGGTCCTATTCCGTCTTCCGGCTCGATCTTCCCGAACCTCCATCCGACGTCGTTTTCCGGGAATGAGGGGTTATGCGGCGCCGTTTTGGCCAAGCCGTGTGCGGCGGATACTGTAACGGCTGGAGCTGTTGAGGTTGACGGTCACGAGCAGCCGAAGAAGACGGCCGGCGCGATTGTGTGGATCATGGCGGCGGCGTTCGGGATCGGTCTCTTCGTCCTCGTCGCCGGGACGAGGTGCTTCCACGCGAGCTACAGCCGTCGGGTGGAGGATAGCCCCCAGATCGGACCGTGGAAATTGACCGCCTTCCAGCGTTTGAATTTCACGGCGGAGGATGTGCTGGAGTGTTTGCAGATGAGCGATAAGGTGATAGGGATGGGTGGGACCGGGACTGTGTACAAGGCGGAGATGCCAGGTGGCGAGATCATAGCGGTGAAGAAGCTGTGGGGGAAGCAGAAGGAGAGCATAATCCGACGGCGGAGAGGGGTGCTGGCCGAGGTGGAGGTGTTGGGGAACGTGAGGCATAGGAATATAGTGAGATTGTTAGGGTGCTGCTGCAACAGGGACTGCACCATGCTGCTCTACGAGTACATGCCCAATGGCAACTTGGACGACTTGTTGCATGGCAAGAACAAGGCCCAGAATTTGGGCGCGGATTGGGTCACGAGGTACAAGATTGCCCTCGGTGTGGCTCAAGGGATTTGCTACTTACATCACGACTGTGATCCGGTGATCGTCCACCGCGATCTCAAGCCGAGTAACATCCTCTTGGACGGTGACATGGAGGCGAGAGTGGCGGACTTTGGGGTGGCTAAGCTGATCCAGAGCGATGAGTCCATGTCGGTGATCGCCGGTTCATACGGCTACATTGCGCCAGAGTATGCTTATACCCTCCAAGTTGATGAGAAGAGTGACATATACAGCTTCGGGGTTGTGCTATTGGAGATTTTAAGCGGAAGGAGATCGGTGGAGGCGATTTTCGGGGATGGGAATAGCATTGTGGATTGGGTTCGGACGAAAATCAAGACTAAAGACGGGATCAACGATGTTTTGGACAAGAATGCCGGGGCAGGTTGTACGCCGGTGAGGGAGGAGATGATGCAAATGCTTCGGATTGCGTTGCTTTGCACGAGTAGGAATCCGGCGGACCGGCCGTCCATGAGGGATGTGGTGTTGATGCTCATTGAAGCCAAACCTAAGAGGAAGTTGCTTGCTAGTCATGTTGTTGGTCGTGATCGAAGTGTGAGTTGTGGTGATATTCCTTTGCCACAAAAGCCAACAATGGAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010016 GO:0010065 GO:0010067 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010346 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071944 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

1024

Amino Acids

112.01

Weight (kDa)

7.94

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 74	5e-06	Leucine rich repeat N-terminal domain
LRR_14	PF23598	286 - 445	1.1e-08	Leucine-rich repeat region
LRR_8	PF13855	511 - 568	1.9e-07	Leucine rich repeat
Pkinase	PF00069	715 - 984	5.4e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	715 - 986	2.4e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61480
fragaria_vesca	FvH4_7g27270
malus_domestica	MD01G1181700.v1.1 MD07G1251900.v1.1
prunus_persica	Prupe.2G275500_v2.0.a1
pyrus_communis	pycom01g19150 pycom07g22430
rosa_chinensis	RchiOBHm_Chr1g0374101
rosa_laevigata	RLG00000026763
rosa_multiflora	Rmu_co8312173.1_g000001 Rmu_co8440105.1_g000001 Rmu_sc0006924.1_g000013
rosa_roxburghii	Rroxscaffold_4G00283740
rosa_rugosa	Rorug01G0380800
rosa_samantha	Rh1AG391500 Rh1BG355500 Rh1CG368500 Rh1DG386200
rosa_wichuraiana	Rw1G034410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1835
Acc36I	ACCTGC	2 cut(s)	370, 2843
Acc65I	GGTACC	1 cut(s)	1715
AccB1I	GGYRCC	3 cut(s)	1091, 1715, 1862
AccB7I	CCANNNNNTGG	2 cut(s)	584, 2428
AccBSI	CCGCTC	1 cut(s)	333
AccI	GTMKAC	2 cut(s)	1116, 1536
AccII	CGCG	5 cut(s)	1388, 1955, 2030, 2435, 2526
AclWI	GGATC	7 cut(s)	134, 1183, 1973, 1994, 2501, 2596, 2828
AcoI	YGGCCR	5 cut(s)	1591, 1872, 1947, 2274, 2933
AcsI	RAATTY	7 cut(s)	85, 294, 1228, 1659, 1729, 2101, 2425
AcuI	CTGAAG	1 cut(s)	204
AcyI	GRCGYC	2 cut(s)	1832, 1863
AfaI	GTAC	8 cut(s)	280, 723, 1400, 1717, 2180, 2372, 2453, 2860
AgeI	ACCGGT	2 cut(s)	491, 1784
AgsI	TTSAA	8 cut(s)	59, 84, 157, 418, 469, 838, 2101, 2969
AhdI	GACNNNNNGTC	1 cut(s)	2935
AjnI	CCWGG	5 cut(s)	433, 577, 1580, 1686, 2194
AjuI	GAANNNNNNNTTGG	4 cut(s)	437, 469, 1636, 1668
AleI	CACNNNNGTG	1 cut(s)	2502
Alw21I	GWGCWC	1 cut(s)	675
Alw26I	GTCTC	4 cut(s)	250, 1748, 1771, 1997
AlwI	GGATC	7 cut(s)	134, 1183, 1973, 1994, 2501, 2596, 2828
AlwNI	CAGNNNCTG	1 cut(s)	2349
Ama87I	CYCGRG	1 cut(s)	530
AoxI	GGCC	8 cut(s)	613, 1357, 1591, 1872, 1947, 2274, 2418, 2933
ApeKI	GCWGC	7 cut(s)	958, 1524, 1572, 1933, 2334, 2337, 2359
ApoI	RAATTY	7 cut(s)	85, 294, 1228, 1659, 1729, 2101, 2425
AsiGI	ACCGGT	2 cut(s)	491, 1784
Asp718I	GGTACC	1 cut(s)	1715
AspLEI	GCGC	6 cut(s)	641, 1457, 1865, 1955, 2435, 2656
AsuC2I	CCSGG	6 cut(s)	605, 781, 1843, 2011, 2170, 2848
AsuII	TTCGAA	1 cut(s)	561
AvaI	CYCGRG	1 cut(s)	530
AvaII	GGWCC	9 cut(s)	188, 350, 494, 1142, 1690, 1787, 2069, 2166, 2929
AxyI	CCTNAGG	1 cut(s)	1296
BaeGI	GKGCMC	1 cut(s)	857
BalI	TGGCCA	2 cut(s)	1593, 1874
BanI	GGYRCC	3 cut(s)	1091, 1715, 1862
BanII	GRGCYC	2 cut(s)	675, 929
BarI	GAAGNNNNNNTAC	2 cut(s)	1382, 1414
BauI	CACGAG	3 cut(s)	1928, 2446, 2911
BbsI	GAAGAC	2 cut(s)	1791, 1949
Bbv12I	GWGCWC	1 cut(s)	675
BbvCI	CCTCAGC	2 cut(s)	1337, 1622
BbvI	GCAGC	7 cut(s)	970, 1511, 1584, 1945, 2321, 2324, 2346
BccI	CCATC	9 cut(s)	938, 1015, 1224, 1370, 1447, 1727, 1833, 2152, 2762
BcgI	CGANNNNNNTGC	6 cut(s)	670, 704, 1159, 1193, 2873, 2907
BciT130I	CCWGG	5 cut(s)	435, 579, 1582, 1688, 2196
BciVI	GTATCC	1 cut(s)	1885
BcnI	CCSGG	6 cut(s)	605, 781, 1843, 2011, 2170, 2848
BcoDI	GTCTC	4 cut(s)	250, 1748, 1771, 1997
BfaI	CTAG	3 cut(s)	239, 251, 2997
BfmI	CTRYAG	2 cut(s)	1466, 2035
BfoI	RGCGCY	2 cut(s)	1458, 1866
BfuAI	ACCTGC	2 cut(s)	370, 2843
BfuI	GTATCC	1 cut(s)	1885
BglI	GCCNNNNNGGC	1 cut(s)	1871
BlpI	GCTNAGC	2 cut(s)	971, 2595
Bme18I	GGWCC	9 cut(s)	188, 350, 494, 1142, 1690, 1787, 2069, 2166, 2929
BmeRI	GACNNNNNGTC	1 cut(s)	2935
BmeT110I	CYCGRG	1 cut(s)	530
BmiI	GGNNCC	8 cut(s)	527, 928, 1093, 1309, 1360, 1717, 1864, 2167
BmrI	ACTGGG	1 cut(s)	665
BmsI	GCATC	5 cut(s)	71, 1272, 2181, 2871, 2949
BmuI	ACTGGG	1 cut(s)	665
BpiI	GAAGAC	2 cut(s)	1791, 1949
BpmI	CTGGAG	4 cut(s)	1379, 1772, 1926, 2144
Bpu10I	CCTNAGC	3 cut(s)	795, 1337, 1622
Bpu1102I	GCTNAGC	2 cut(s)	971, 2595
Bpu14I	TTCGAA	1 cut(s)	561
BpuEI	CTTGAG	7 cut(s)	349, 434, 478, 489, 1636, 2460, 2516
BpuMI	CCSGG	6 cut(s)	605, 781, 1843, 2011, 2170, 2848
BsaHI	GRCGYC	2 cut(s)	1832, 1863
BsaI	GGTCTC	2 cut(s)	1748, 1997
BsaWI	WCCGGW	8 cut(s)	275, 491, 718, 1499, 1640, 1712, 1784, 2509
BsaXI	ACNNNNNCTCC	8 cut(s)	761, 791, 873, 903, 1337, 1367, 1694, 1724
Bse118I	RCCGGY	7 cut(s)	491, 1568, 1784, 1949, 2633, 2863, 2931
Bse1I	ACTGG	4 cut(s)	191, 660, 1236, 1396
Bse21I	CCTNAGG	1 cut(s)	1296
Bse3DI	GCAATG	3 cut(s)	942, 1387, 2649
BseBI	CCWGG	5 cut(s)	435, 579, 1582, 1688, 2196
BseMI	GCAATG	3 cut(s)	942, 1387, 2649
BseMII	CTCAG	9 cut(s)	118, 400, 535, 786, 962, 1310, 1351, 1601, 1636
BseNI	ACTGG	4 cut(s)	191, 660, 1236, 1396
BseRI	GAGGAG	2 cut(s)	1424, 2888
BseSI	GKGCMC	1 cut(s)	857
BseX3I	CGGCCG	2 cut(s)	1947, 2933
BseXI	GCAGC	7 cut(s)	970, 1511, 1584, 1945, 2321, 2324, 2346
BseYI	CCCAGC	3 cut(s)	162, 381, 934
BsgI	GTGCAG	2 cut(s)	75, 2335
Bsh1236I	CGCG	5 cut(s)	1388, 1955, 2030, 2435, 2526
Bsh1285I	CGRYCG	2 cut(s)	1950, 2936
BshFI	GGCC	8 cut(s)	615, 1359, 1593, 1874, 1949, 2276, 2420, 2935
BshNI	GGYRCC	3 cut(s)	1091, 1715, 1862
BshTI	ACCGGT	2 cut(s)	491, 1784
BsiEI	CGRYCG	2 cut(s)	1950, 2936
BsiHKAI	GWGCWC	1 cut(s)	675
BsiHKCI	CYCGRG	1 cut(s)	530
BslFI	GGGAC	5 cut(s)	1598, 2026, 2179, 2185, 2360
BsmAI	GTCTC	4 cut(s)	250, 1748, 1771, 1997
BsmBI	CGTCTC	1 cut(s)	1771
BsmFI	GGGAC	5 cut(s)	1598, 2026, 2179, 2185, 2360
BsmI	GAATGC	2 cut(s)	1575, 2848
BsnI	GGCC	8 cut(s)	615, 1359, 1593, 1874, 1949, 2276, 2420, 2935
Bso31I	GGTCTC	2 cut(s)	1748, 1997
BsoBI	CYCGRG	1 cut(s)	530
Bsp119I	TTCGAA	1 cut(s)	561
Bsp1286I	GDGCHC	3 cut(s)	675, 857, 929
Bsp1407I	TGTACA	1 cut(s)	2178
Bsp1720I	GCTNAGC	2 cut(s)	971, 2595
BspANI	GGCC	8 cut(s)	615, 1359, 1593, 1874, 1949, 2276, 2420, 2935
BspCNI	CTCAG	9 cut(s)	117, 399, 534, 787, 963, 1309, 1350, 1602, 1635
BspFNI	CGCG	5 cut(s)	1388, 1955, 2030, 2435, 2526
BspLI	GGNNCC	8 cut(s)	527, 928, 1093, 1309, 1360, 1717, 1864, 2167
BspMAI	CTGCAG	1 cut(s)	1470
BspMI	ACCTGC	2 cut(s)	370, 2843
BspPI	GGATC	7 cut(s)	134, 1183, 1973, 1994, 2501, 2596, 2828
BspT104I	TTCGAA	1 cut(s)	561
BspT107I	GGYRCC	3 cut(s)	1091, 1715, 1862
BspTNI	GGTCTC	2 cut(s)	1748, 1997
BsrBI	CCGCTC	1 cut(s)	333
BsrDI	GCAATG	3 cut(s)	942, 1387, 2649
BsrFI	RCCGGY	7 cut(s)	491, 1568, 1784, 1949, 2633, 2863, 2931
BsrGI	TGTACA	1 cut(s)	2178
BsrI	ACTGG	4 cut(s)	191, 660, 1236, 1396
BssAI	RCCGGY	7 cut(s)	491, 1568, 1784, 1949, 2633, 2863, 2931
BssNI	GRCGYC	2 cut(s)	1832, 1863
BssSI	CACGAG	3 cut(s)	1928, 2446, 2911
BssT1I	CCWWGG	2 cut(s)	1165, 1652
Bst2BI	CACGAG	3 cut(s)	1928, 2446, 2911
Bst2UI	CCWGG	5 cut(s)	435, 579, 1582, 1688, 2196
Bst4CI	ACNGT	6 cut(s)	1897, 1925, 2073, 2176, 2504, 2558
Bst6I	CTCTTC	7 cut(s)	32, 53, 839, 1129, 1199, 2000, 2684
BstACI	GRCGYC	2 cut(s)	1832, 1863
BstAUI	TGTACA	1 cut(s)	2178
BstBI	TTCGAA	1 cut(s)	561
BstC8I	GCNNGC	4 cut(s)	1951, 2032, 2274, 2994
BstDSI	CCRYGG	1 cut(s)	2072
BstFNI	CGCG	5 cut(s)	1388, 1955, 2030, 2435, 2526
BstH2I	RGCGCY	2 cut(s)	1458, 1866
BstHHI	GCGC	6 cut(s)	641, 1457, 1865, 1955, 2435, 2656
BstMAI	GTCTC	4 cut(s)	250, 1748, 1771, 1997
BstMCI	CGRYCG	2 cut(s)	1950, 2936
BstNI	CCWGG	5 cut(s)	435, 579, 1582, 1688, 2196
BstNSI	RCATGY	1 cut(s)	2377
BstSFI	CTRYAG	2 cut(s)	1466, 2035
BstSLI	GKGCMC	1 cut(s)	857
BstUI	CGCG	5 cut(s)	1388, 1955, 2030, 2435, 2526
BstV1I	GCAGC	7 cut(s)	970, 1511, 1584, 1945, 2321, 2324, 2346
BstV2I	GAAGAC	2 cut(s)	1791, 1949
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BstZI	CGGCCG	2 cut(s)	1947, 2933
Bsu36I	CCTNAGG	1 cut(s)	1296
BsuI	GTATCC	1 cut(s)	1885
BsuRI	GGCC	8 cut(s)	615, 1359, 1593, 1874, 1949, 2276, 2420, 2935
BtgI	CCRYGG	1 cut(s)	2072
BtgZI	GCGATG	1 cut(s)	2625
BtsI	GCAGTG	1 cut(s)	1594
BtsIMutI	CAGTG	2 cut(s)	112, 1594
BveI	ACCTGC	2 cut(s)	370, 2843
Cac8I	GCNNGC	4 cut(s)	1951, 2032, 2274, 2994
CaiI	CAGNNNCTG	1 cut(s)	2349
CfoI	GCGC	6 cut(s)	641, 1457, 1865, 1955, 2435, 2656
Cfr10I	RCCGGY	7 cut(s)	491, 1568, 1784, 1949, 2633, 2863, 2931
CpoI	CGGWCCG	2 cut(s)	2069, 2929
CseI	GACGC	1 cut(s)	1522
Csp6I	GTAC	8 cut(s)	279, 722, 1399, 1716, 2179, 2371, 2452, 2859
CspAI	ACCGGT	2 cut(s)	491, 1784
CspCI	CAANNNNNGTGG	2 cut(s)	529, 564
CspI	CGGWCCG	2 cut(s)	2069, 2929
CviQI	GTAC	8 cut(s)	279, 722, 1399, 1716, 2179, 2371, 2452, 2859
DinI	GGCGCC	1 cut(s)	1864
DriI	GACNNNNNGTC	1 cut(s)	2935
EaeI	YGGCCR	5 cut(s)	1591, 1872, 1947, 2274, 2933
EagI	CGGCCG	2 cut(s)	1947, 2933
Eam1104I	CTCTTC	7 cut(s)	32, 53, 839, 1129, 1199, 2000, 2684
Eam1105I	GACNNNNNGTC	1 cut(s)	2935
EarI	CTCTTC	7 cut(s)	32, 53, 839, 1129, 1199, 2000, 2684
EciI	GGCGGA	7 cut(s)	1468, 1904, 2126, 2201, 2275, 2594, 2942
Ecl136II	GAGCTC	1 cut(s)	673
EclXI	CGGCCG	2 cut(s)	1947, 2933
Eco130I	CCWWGG	2 cut(s)	1165, 1652
Eco24I	GRGCYC	2 cut(s)	675, 929
Eco31I	GGTCTC	2 cut(s)	1748, 1997
Eco47I	GGWCC	9 cut(s)	188, 350, 494, 1142, 1690, 1787, 2069, 2166, 2929
Eco52I	CGGCCG	2 cut(s)	1947, 2933
Eco53kI	GAGCTC	1 cut(s)	673
Eco57I	CTGAAG	1 cut(s)	204
Eco81I	CCTNAGG	1 cut(s)	1296
Eco88I	CYCGRG	1 cut(s)	530
EcoICRI	GAGCTC	1 cut(s)	673
EcoRII	CCWGG	5 cut(s)	433, 577, 1580, 1686, 2194
EcoT14I	CCWWGG	2 cut(s)	1165, 1652
EcoT38I	GRGCYC	2 cut(s)	675, 929
EgeI	GGCGCC	1 cut(s)	1864
EheI	GGCGCC	1 cut(s)	1864
ErhI	CCWWGG	2 cut(s)	1165, 1652
Esp3I	CGTCTC	1 cut(s)	1771
FaqI	GGGAC	5 cut(s)	1598, 2026, 2179, 2185, 2360
FauI	CCCGC	1 cut(s)	438
FblI	GTMKAC	2 cut(s)	1116, 1536
FriOI	GRGCYC	2 cut(s)	675, 929
FspBI	CTAG	3 cut(s)	239, 251, 2997
GlaI	GCGC	6 cut(s)	640, 1456, 1864, 1954, 2434, 2655
GsaI	CCCAGC	3 cut(s)	166, 385, 938
GsuI	CTGGAG	4 cut(s)	1379, 1772, 1926, 2144
HaeII	RGCGCY	2 cut(s)	1458, 1866
HaeIII	GGCC	8 cut(s)	615, 1359, 1593, 1874, 1949, 2276, 2420, 2935
HgaI	GACGC	1 cut(s)	1522
HhaI	GCGC	6 cut(s)	641, 1457, 1865, 1955, 2435, 2656
Hin1I	GRCGYC	2 cut(s)	1832, 1863
Hin6I	GCGC	6 cut(s)	639, 1455, 1863, 1953, 2433, 2654
HinP1I	GCGC	6 cut(s)	639, 1455, 1863, 1953, 2433, 2654
HincII	GTYRAC	3 cut(s)	1117, 1782, 1921
HindII	GTYRAC	3 cut(s)	1117, 1782, 1921
HindIII	AAGCTT	1 cut(s)	1604
HpaI	GTTAAC	1 cut(s)	1782
Hpy166II	GTNNAC	6 cut(s)	1117, 1537, 1782, 1921, 2179, 2521
Hpy8I	GTNNAC	6 cut(s)	1117, 1537, 1782, 1921, 2179, 2521
Hpy99I	CGWCG	8 cut(s)	1112, 1115, 1118, 1834, 1837, 2009, 2046, 2259
HpyAV	CCTTC	8 cut(s)	105, 179, 557, 1336, 1683, 2098, 2233, 2733
HpyCH4III	ACNGT	6 cut(s)	1897, 1925, 2073, 2176, 2504, 2558
HpyCH4IV	ACGT	3 cut(s)	1764, 1832, 2298
HpySE526I	ACGT	3 cut(s)	1764, 1832, 2298
Hsp92I	GRCGYC	2 cut(s)	1832, 1863
HspAI	GCGC	6 cut(s)	639, 1455, 1863, 1953, 2433, 2654
KasI	GGCGCC	1 cut(s)	1862
KpnI	GGTACC	1 cut(s)	1719
KroI	GCCGGC	1 cut(s)	1949
KroNI	GCCGGC	1 cut(s)	1951
KspAI	GTTAAC	1 cut(s)	1782
LmnI	GCTCC	5 cut(s)	607, 932, 1313, 1398, 1907
Lsp1109I	GCAGC	7 cut(s)	970, 1511, 1584, 1945, 2321, 2324, 2346
LweI	GCATC	5 cut(s)	71, 1272, 2181, 2871, 2949
MaeI	CTAG	3 cut(s)	239, 251, 2997
MaeII	ACGT	3 cut(s)	1764, 1832, 2298
MaeIII	GTNAC	8 cut(s)	335, 783, 1897, 1925, 2443, 2540, 2558, 2693
MbiI	CCGCTC	1 cut(s)	333
MfeI	CAATTG	1 cut(s)	725
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	3 cut(s)	675, 857, 929
MlsI	TGGCCA	2 cut(s)	1593, 1874
MluNI	TGGCCA	2 cut(s)	1593, 1874
Mly113I	GGCGCC	1 cut(s)	1863
MlyI	GAGTC	2 cut(s)	513, 2624
MmeI	TCCRAC	5 cut(s)	397, 541, 1152, 1853, 2278
Mox20I	TGGCCA	2 cut(s)	1593, 1874
MroNI	GCCGGC	1 cut(s)	1949
MscI	TGGCCA	2 cut(s)	1593, 1874
MseI	TTAA	9 cut(s)	422, 633, 809, 1461, 1761, 1773, 1781, 2732, 3073
MslI	CAYNNNNRTG	4 cut(s)	680, 2213, 2502, 2624
Msp20I	TGGCCA	2 cut(s)	1593, 1874
MspA1I	CMGCKG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	725
Mva1269I	GAATGC	2 cut(s)	1575, 2848
MvaI	CCWGG	5 cut(s)	435, 579, 1582, 1688, 2196
MvnI	CGCG	5 cut(s)	1388, 1955, 2030, 2435, 2526
NaeI	GCCGGC	1 cut(s)	1951
NarI	GGCGCC	1 cut(s)	1863
NciI	CCSGG	6 cut(s)	605, 781, 1843, 2011, 2170, 2848
NgoMIV	GCCGGC	1 cut(s)	1949
NlaIV	GGNNCC	8 cut(s)	527, 928, 1093, 1309, 1360, 1717, 1864, 2167
NmeAIII	GCCGAG	4 cut(s)	1068, 1356, 2302, 2562
NmuCI	GTSAC	5 cut(s)	783, 1925, 2443, 2558, 2693
NspI	RCATGY	1 cut(s)	2377
NspV	TTCGAA	1 cut(s)	561
OliI	CACNNNNGTG	1 cut(s)	2502
PaeR7I	CTCGAG	1 cut(s)	530
PasI	CCCWGGG	1 cut(s)	1581
PcsI	WCGNNNNNNNCGW	7 cut(s)	1113, 1814, 1952, 1995, 2523, 2753, 2823
PctI	GAATGC	2 cut(s)	1575, 2848
PdiI	GCCGGC	1 cut(s)	1951
PfeI	GAWTC	8 cut(s)	213, 316, 390, 913, 1037, 1206, 1257, 2920
PflMI	CCANNNNNTGG	2 cut(s)	584, 2428
PfoI	TCCNGGA	2 cut(s)	603, 1841
PinAI	ACCGGT	2 cut(s)	491, 1784
PleI	GAGTC	2 cut(s)	513, 2623
PluTI	GGCGCC	1 cut(s)	1866
PpsI	GAGTC	2 cut(s)	513, 2623
Psp124BI	GAGCTC	1 cut(s)	675
Psp6I	CCWGG	5 cut(s)	433, 577, 1580, 1686, 2194
PspFI	CCCAGC	3 cut(s)	162, 381, 934
PspGI	CCWGG	5 cut(s)	433, 577, 1580, 1686, 2194
PspN4I	GGNNCC	8 cut(s)	527, 928, 1093, 1309, 1360, 1717, 1864, 2167
PstI	CTGCAG	1 cut(s)	1470
PstNI	CAGNNNCTG	1 cut(s)	2349
PsuI	RGATCY	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	8 cut(s)	280, 723, 1400, 1717, 2180, 2372, 2453, 2860
RsaNI	GTAC	8 cut(s)	279, 722, 1399, 1716, 2179, 2371, 2452, 2859
RseI	CAYNNNNRTG	4 cut(s)	680, 2213, 2502, 2624
Rsr2I	CGGWCCG	2 cut(s)	2069, 2929
RsrII	CGGWCCG	2 cut(s)	2069, 2929
SacI	GAGCTC	1 cut(s)	675
SalI	GTCGAC	1 cut(s)	1115
SaqAI	TTAA	9 cut(s)	422, 633, 809, 1461, 1761, 1773, 1781, 2732, 3073
SchI	GAGTC	2 cut(s)	513, 2624
SduI	GDGCHC	3 cut(s)	675, 857, 929
SfaNI	GCATC	5 cut(s)	71, 1272, 2181, 2871, 2949
SfcI	CTRYAG	2 cut(s)	1466, 2035
SfoI	GGCGCC	1 cut(s)	1864
Sfr274I	CTCGAG	1 cut(s)	530
SfuI	TTCGAA	1 cut(s)	561
SgrAI	CRCCGGYG	1 cut(s)	2863
SinI	GGWCC	9 cut(s)	188, 350, 494, 1142, 1690, 1787, 2069, 2166, 2929
SlaI	CTCGAG	1 cut(s)	530
SmiMI	CAYNNNNRTG	4 cut(s)	680, 2213, 2502, 2624
SmlI	CTYRAG	8 cut(s)	328, 449, 457, 504, 530, 1615, 2475, 2531
SmoI	CTYRAG	8 cut(s)	328, 449, 457, 504, 530, 1615, 2475, 2531
SspDI	GGCGCC	1 cut(s)	1862
SspI	AATATT	2 cut(s)	571, 592
SspMI	CTAG	3 cut(s)	239, 251, 2997
SstI	GAGCTC	1 cut(s)	675
StyI	CCWWGG	2 cut(s)	1165, 1652
TaaI	ACNGT	6 cut(s)	1897, 1925, 2073, 2176, 2504, 2558
TaiI	ACGT	3 cut(s)	1767, 1835, 2301
TaqII	GACCGA	1 cut(s)	1979
TatI	WGTACW	2 cut(s)	2178, 2370
TauI	GCSGC	6 cut(s)	941, 1388, 1863, 1889, 1976, 1979
TfiI	GAWTC	8 cut(s)	213, 316, 390, 913, 1037, 1206, 1257, 2920
Tru1I	TTAA	9 cut(s)	422, 633, 809, 1461, 1761, 1773, 1781, 2732, 3073
Tru9I	TTAA	9 cut(s)	422, 633, 809, 1461, 1761, 1773, 1781, 2732, 3073
TscAI	CASTG	2 cut(s)	112, 1601
TseFI	GTSAC	5 cut(s)	783, 1925, 2443, 2558, 2693
TseI	GCWGC	7 cut(s)	958, 1524, 1572, 1933, 2334, 2337, 2359
Tsp45I	GTSAC	5 cut(s)	783, 1925, 2443, 2558, 2693
TspDTI	ATGAA	4 cut(s)	17, 192, 1507, 2628
TspGWI	ACGGA	1 cut(s)	1785
TspRI	CASTG	2 cut(s)	112, 1601
Van91I	CCANNNNNTGG	2 cut(s)	584, 2428
VpaK11BI	GGWCC	9 cut(s)	188, 350, 494, 1142, 1690, 1787, 2069, 2166, 2929
XapI	RAATTY	7 cut(s)	85, 294, 1228, 1659, 1729, 2101, 2425
XbaI	TCTAGA	1 cut(s)	250
XceI	RCATGY	1 cut(s)	2377
XcmI	CCANNNNNNNNNTGG	4 cut(s)	1446, 1684, 2386, 2947
XhoI	CTCGAG	1 cut(s)	530
XmiI	GTMKAC	2 cut(s)	1116, 1536
XspI	CTAG	3 cut(s)	239, 251, 2997
ZraI	GACGTC	1 cut(s)	1833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.