Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0012250

Physical Location & Seq

Genomic Coordinates Forward (+)

60591918 .. 60596809

Gene Structure 4892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG386200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2706 bp

ATGAAACTTCCCTTTCTTCGCTTTCTCTTCTTCTTCTTCTCTCTCTTCTTTCTTCAAGCATCCATAGTCCTCTGTGCTTCAAATTCTGCACCTTCCCAACTCAGTGCCTTGCTCTCCCTCAAATCCTCACTCAAGGATCCTCTCTTTACATTCAATGGCTGGGAGAGCAAGGCTAATACTGAAGGTCCAGTTTGGTGTTCATGGTCTGGAATCAAATGCCACCCCAACACATCCCTAGTAGTCTCTCTAGACCTCTCTCACCGCAATCTTTCCGGTACAATACCAGCTGAAATTCGCTACTTGTCGAGCTTGATTCACCTAAACTTGAGCGGTAACAGCTTTGCTGGACCTCTGCAACCAGCCATTTTCCAACTCACCCAGCTCAGAATCCTTGACATAAGCCACAACGACTTCAACTTAACTTTCCCGCCTGGGATTTCCAAGCTCAAGTTCTTGAGGGTCTTCAATGCTTACAGCAACAGCTTCACCGGTCCTTTACCTCAAGAAATCATCCGACTCAGGTTCCTCGAGAAGCTCAACCTTAGTGGAAGCTACTTCGAAGGTAATATTCCACCAGGGTATGGAAATATTCCCCAACTCCGGGAGCTTGGCCTCGCTGGAAATGTTCTTAAAGGCGCAATACCACCTCAATTGGGGTTCTTATCAGAGCTCACTCGCATGGAGATCGGCTACAACGGCTTCACAGGTGGGCTTCCGGTACAATTGACATTACTATCAAACCTCACCTACTTAGACATCTCCAATAACTTGCTCTCCGGGTCACTCCCACCTGAGCTTGGCAATTTAACCATGCTCAACACATTGTTCCTCTTCAAAAACCAATTTTCGGGCACTATCCCACCCACCCTCGGAAACTTACAAGCTCTCCGATTCCTCGACTTATCAGAGAATCAGCTTTCGGGCTCCATCCCAGCCGCCATTGCTACACTAAAACAGCTCAACAGGCTGAGCTTACTGAACAATTTTTTAGTTGGCGAAATACCATCCCAAATCGGAGAGCTTCCCTACTTGGAATCCCTGCTTCTCTGGAACAACTCCCTAACAGGAACCCTCCCCCAAAACCTCGGCACCAATGCGAAGCTCGTCGTCGTCGACCTCTCTTCCAACTCCCTCACAGGTCCAATCCCCCCAACTCTCTGCAAAGGCAACACACTCGTCAAGCTCATCCTCTTCTCAAACAGATTCACCAGCCATCTCCCACCAAATTTAGCCAGTTGTACATCCTTGTTCCGATTCCGCATCCAAAACAACCAACTCAACGGCTCAATCCCTCAGGGCTTCGGCTCCCTCCCCAACCTAACCTTCTTCGACCTCAGCAACAACAGCTTCTCCGGCCCCATCCCCTCCGATCTCGGCAATGCCGCGAAGCTCCAGTACCTAAACATCTCCCAGAACCCTCTCCACACACTCCTCCCATCAAACATCTGGGGCGCTGTTAATCTGCAGATATTCTCCGCCATCTCCAGCCACCTCACCGGAAAAATCCCCGACTTCATCGGCTGCCAGAGCGTCTACAAGATCGAATTACAACGCAACAACTTCACCGGCAGCATTCCCTGGGACATTGGCCACTGCGAGAAGCTTCTGAGCTTGAGCCTCAGCCGGAACTCACTCACCGGAATTATACCTTGGGAAATTTCAGCTCTGCCTTCCATAACCGACCTGGACCTCTCCTACAACTTCCTCTCCGGTACCATCCCCTCGAATTTCGAGAATTGCAGAACGCTGGAGACCTTTAACGTCTCGTTTAATCTGTTAACCGGTCCTATTCCGTCTTCCGGTGCGATCTTCCCGAACCTTCATCCGACGTCGTTTTCCGGGAATGAGGGGCTATGCGGCGCCGTTTTGGCCAAGCCGTGCGCGGCGGATACTCTAACGGCTGGAGCTGTTGAGGTTGATGGTCACGAGCAGCCGAAGAAGACGGCCGGCGCGATTGTGTGGATCATGGCCGCGGCGTTCGGGATCGGTCTCTTCGTCCTCGTCGCCGGGACGAGGTGCTTCCACGCGAGCTACAGCCGTCGGATGGAGGATAGCCCCCAGATCGGACCGTGGAAATTGACCGCCTTCCAGCGTTTGAATTTCACGGCGGAGGATGTGCTGGAGTGTTTGCAGATGAGCGATAAGGTGATAGGGATGGGTGGGACCGGGACGGTGTATAAGGCGGAGATGCCAGGTGGGGAGATCATAGCGGTGAAGAAGCTGTGGGGGAAGCAGAAGGAGAGCATAATCCGACGGCGGAGAGGGGTGCTGGCCGAGGTGGAGGTGTTGGGGAACGTGAGGCATAGGAATATAGTGAGATTGTTAGGGTGCTGCTGCAACAGGGACTGCACCATGCTGCTCTACGAGTACATGCCCAATGGCAACTTGGACGACTTGTTGCATGGCAAGAACAAGGCCCAGAATTTGGGCGCGGATTGGGTCACGAGGTACAAGATTGCCCTCGGTGTCGCCCAAGGGATTTGCTACTTACATCACGACTGTGATCCGGTGATCGTCCACCGCGATCTCAAGCCGAGTAACATCCTCTTGGACGGTGACATGGAGGCGAGAGTGGCGGACTTTGGGGTGGCTAAGCTGATCCAGAGCGATGAGTCCATGTCGGTGATCGCCGGTTCCTACGGCTACATTGCACCAGAGTTCATTTTGTTGGGTGACGAAATCCAGTGGAGGCAAGTTAGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010016 GO:0010065 GO:0010067 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010346 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071944 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

901

Amino Acids

98.58

Weight (kDa)

7.51

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 73	4.3e-06	Leucine rich repeat N-terminal domain
LRR_14	PF23598	285 - 445	3.6e-08	Leucine-rich repeat region
LRR_8	PF13855	510 - 567	1.6e-07	Leucine rich repeat
Pkinase	PF00069	714 - 888	7.9e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	714 - 886	1.3e-27	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61480
fragaria_vesca	FvH4_7g27270
malus_domestica	MD01G1181700.v1.1 MD07G1251900.v1.1
prunus_persica	Prupe.2G275500_v2.0.a1
pyrus_communis	pycom01g19150 pycom07g22430
rosa_chinensis	RchiOBHm_Chr1g0374101
rosa_laevigata	RLG00000026763
rosa_multiflora	Rmu_co8312173.1_g000001 Rmu_co8440105.1_g000001 Rmu_sc0006924.1_g000013
rosa_roxburghii	Rroxscaffold_4G00283740
rosa_rugosa	Rorug01G0380800
rosa_samantha	Rh1AG391500 Rh1BG355500 Rh1CG368500 Rh1DG386200
rosa_wichuraiana	Rw1G034410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1832
Acc65I	GGTACC	1 cut(s)	1712
AccB1I	GGYRCC	3 cut(s)	1088, 1712, 1859
AccB7I	CCANNNNNTGG	2 cut(s)	581, 2425
AccBSI	CCGCTC	1 cut(s)	330
AccI	GTMKAC	2 cut(s)	1113, 1533
AccII	CGCG	7 cut(s)	1385, 1883, 1952, 1973, 2027, 2432, 2523
AclWI	GGATC	6 cut(s)	131, 144, 1970, 1991, 2498, 2593
AcoI	YGGCCR	5 cut(s)	1588, 1869, 1944, 1968, 2271
AcsI	RAATTY	7 cut(s)	82, 291, 1225, 1656, 1726, 2098, 2422
AcuI	CTGAAG	1 cut(s)	201
AcyI	GRCGYC	2 cut(s)	1829, 1860
AfaI	GTAC	7 cut(s)	277, 720, 1240, 1397, 1714, 2369, 2450
AgeI	ACCGGT	2 cut(s)	488, 1781
AgsI	TTSAA	7 cut(s)	56, 81, 154, 415, 466, 835, 2098
AjnI	CCWGG	5 cut(s)	430, 574, 1577, 1683, 2191
AjuI	GAANNNNNNNTTGG	6 cut(s)	434, 466, 1307, 1339, 1633, 1665
AleI	CACNNNNGTG	1 cut(s)	2499
Alw21I	GWGCWC	1 cut(s)	672
Alw26I	GTCTC	4 cut(s)	247, 1745, 1768, 1994
AlwI	GGATC	6 cut(s)	131, 144, 1970, 1991, 2498, 2593
AlwNI	CAGNNNCTG	1 cut(s)	2346
Ama87I	CYCGRG	1 cut(s)	527
AoxI	GGCC	8 cut(s)	610, 1354, 1588, 1869, 1944, 1968, 2271, 2415
ApeKI	GCWGC	6 cut(s)	1521, 1569, 1930, 2331, 2334, 2356
ApoI	RAATTY	7 cut(s)	82, 291, 1225, 1656, 1726, 2098, 2422
AsiGI	ACCGGT	2 cut(s)	488, 1781
Asp718I	GGTACC	1 cut(s)	1712
AspLEI	GCGC	6 cut(s)	638, 1454, 1862, 1883, 1952, 2432
AsuC2I	CCSGG	5 cut(s)	602, 778, 1840, 2008, 2167
AsuII	TTCGAA	1 cut(s)	558
AvaI	CYCGRG	1 cut(s)	527
AvaII	GGWCC	8 cut(s)	185, 347, 491, 1139, 1687, 1784, 2066, 2163
AxyI	CCTNAGG	1 cut(s)	1293
BaeGI	GKGCMC	1 cut(s)	854
BalI	TGGCCA	2 cut(s)	1590, 1871
BamHI	GGATCC	1 cut(s)	136
BanI	GGYRCC	3 cut(s)	1088, 1712, 1859
BanII	GRGCYC	2 cut(s)	672, 926
BarI	GAAGNNNNNNTAC	2 cut(s)	1379, 1411
BauI	CACGAG	2 cut(s)	1925, 2443
BbsI	GAAGAC	3 cut(s)	454, 1788, 1946
Bbv12I	GWGCWC	1 cut(s)	672
BbvCI	CCTCAGC	2 cut(s)	1334, 1619
BbvI	GCAGC	6 cut(s)	1508, 1581, 1942, 2318, 2321, 2343
BcgI	CGANNNNNNTGC	4 cut(s)	667, 701, 1156, 1190
BciT130I	CCWGG	5 cut(s)	432, 576, 1579, 1685, 2193
BciVI	GTATCC	1 cut(s)	1882
BcnI	CCSGG	5 cut(s)	602, 778, 1840, 2008, 2167
BcoDI	GTCTC	4 cut(s)	247, 1745, 1768, 1994
BfaI	CTAG	2 cut(s)	236, 248
BfmI	CTRYAG	2 cut(s)	1463, 2032
BfoI	RGCGCY	2 cut(s)	1455, 1863
BfuI	GTATCC	1 cut(s)	1882
BglI	GCCNNNNNGGC	1 cut(s)	1868
BlpI	GCTNAGC	2 cut(s)	968, 2592
Bme18I	GGWCC	8 cut(s)	185, 347, 491, 1139, 1687, 1784, 2066, 2163
BmeT110I	CYCGRG	1 cut(s)	527
BmsI	GCATC	3 cut(s)	68, 1269, 2178
BpiI	GAAGAC	3 cut(s)	454, 1788, 1946
BpmI	CTGGAG	5 cut(s)	1376, 1468, 1769, 1923, 2141
Bpu10I	CCTNAGC	3 cut(s)	792, 1334, 1619
Bpu1102I	GCTNAGC	2 cut(s)	968, 2592
Bpu14I	TTCGAA	1 cut(s)	558
BpuEI	CTTGAG	7 cut(s)	116, 346, 431, 475, 486, 1633, 2513
BpuMI	CCSGG	5 cut(s)	602, 778, 1840, 2008, 2167
BsaHI	GRCGYC	2 cut(s)	1829, 1860
BsaI	GGTCTC	2 cut(s)	1745, 1994
BsaWI	WCCGGW	9 cut(s)	272, 488, 715, 1496, 1637, 1709, 1781, 1799, 2506
BsaXI	ACNNNNNCTCC	8 cut(s)	758, 788, 870, 900, 1334, 1364, 1691, 1721
Bse118I	RCCGGY	5 cut(s)	488, 1565, 1781, 1946, 2630
Bse1I	ACTGG	4 cut(s)	188, 1233, 1393, 2683
Bse21I	CCTNAGG	1 cut(s)	1293
Bse3DI	GCAATG	3 cut(s)	939, 1384, 2646
BseBI	CCWGG	5 cut(s)	432, 576, 1579, 1685, 2193
BseMI	GCAATG	3 cut(s)	939, 1384, 2646
BseMII	CTCAG	9 cut(s)	115, 397, 532, 783, 959, 1307, 1348, 1598, 1633
BseNI	ACTGG	4 cut(s)	188, 1233, 1393, 2683
BseRI	GAGGAG	1 cut(s)	1421
BseSI	GKGCMC	1 cut(s)	854
BseX3I	CGGCCG	1 cut(s)	1944
BseXI	GCAGC	6 cut(s)	1508, 1581, 1942, 2318, 2321, 2343
BseYI	CCCAGC	3 cut(s)	159, 378, 931
BsgI	GTGCAG	2 cut(s)	72, 2332
Bsh1236I	CGCG	7 cut(s)	1385, 1883, 1952, 1973, 2027, 2432, 2523
Bsh1285I	CGRYCG	1 cut(s)	1947
BshFI	GGCC	8 cut(s)	612, 1356, 1590, 1871, 1946, 1970, 2273, 2417
BshNI	GGYRCC	3 cut(s)	1088, 1712, 1859
BshTI	ACCGGT	2 cut(s)	488, 1781
BsiEI	CGRYCG	1 cut(s)	1947
BsiHKAI	GWGCWC	1 cut(s)	672
BsiHKCI	CYCGRG	1 cut(s)	527
BslFI	GGGAC	5 cut(s)	1595, 2023, 2176, 2182, 2357
BsmAI	GTCTC	4 cut(s)	247, 1745, 1768, 1994
BsmBI	CGTCTC	1 cut(s)	1768
BsmFI	GGGAC	5 cut(s)	1595, 2023, 2176, 2182, 2357
BsmI	GAATGC	1 cut(s)	1572
BsnI	GGCC	8 cut(s)	612, 1356, 1590, 1871, 1946, 1970, 2273, 2417
Bso31I	GGTCTC	2 cut(s)	1745, 1994
BsoBI	CYCGRG	1 cut(s)	527
Bsp119I	TTCGAA	1 cut(s)	558
Bsp1286I	GDGCHC	3 cut(s)	672, 854, 926
Bsp1407I	TGTACA	1 cut(s)	1238
Bsp1720I	GCTNAGC	2 cut(s)	968, 2592
BspANI	GGCC	8 cut(s)	612, 1356, 1590, 1871, 1946, 1970, 2273, 2417
BspCNI	CTCAG	9 cut(s)	114, 396, 531, 784, 960, 1306, 1347, 1599, 1632
BspFNI	CGCG	7 cut(s)	1385, 1883, 1952, 1973, 2027, 2432, 2523
BspMAI	CTGCAG	1 cut(s)	1467
BspPI	GGATC	6 cut(s)	131, 144, 1970, 1991, 2498, 2593
BspT104I	TTCGAA	1 cut(s)	558
BspT107I	GGYRCC	3 cut(s)	1088, 1712, 1859
BspTNI	GGTCTC	2 cut(s)	1745, 1994
BsrBI	CCGCTC	1 cut(s)	330
BsrDI	GCAATG	3 cut(s)	939, 1384, 2646
BsrFI	RCCGGY	5 cut(s)	488, 1565, 1781, 1946, 2630
BsrGI	TGTACA	1 cut(s)	1238
BsrI	ACTGG	4 cut(s)	188, 1233, 1393, 2683
BssAI	RCCGGY	5 cut(s)	488, 1565, 1781, 1946, 2630
BssNI	GRCGYC	2 cut(s)	1829, 1860
BssSI	CACGAG	2 cut(s)	1925, 2443
BssT1I	CCWWGG	2 cut(s)	1649, 2473
Bst2BI	CACGAG	2 cut(s)	1925, 2443
Bst2UI	CCWGG	5 cut(s)	432, 576, 1579, 1685, 2193
Bst4CI	ACNGT	4 cut(s)	2070, 2173, 2501, 2555
Bst6I	CTCTTC	6 cut(s)	32, 50, 836, 1126, 1196, 1997
BstACI	GRCGYC	2 cut(s)	1829, 1860
BstAUI	TGTACA	1 cut(s)	1238
BstBI	TTCGAA	1 cut(s)	558
BstC8I	GCNNGC	3 cut(s)	1948, 2029, 2271
BstDSI	CCRYGG	2 cut(s)	1971, 2069
BstFNI	CGCG	7 cut(s)	1385, 1883, 1952, 1973, 2027, 2432, 2523
BstH2I	RGCGCY	2 cut(s)	1455, 1863
BstHHI	GCGC	6 cut(s)	638, 1454, 1862, 1883, 1952, 2432
BstMAI	GTCTC	4 cut(s)	247, 1745, 1768, 1994
BstMCI	CGRYCG	1 cut(s)	1947
BstNI	CCWGG	5 cut(s)	432, 576, 1579, 1685, 2193
BstNSI	RCATGY	1 cut(s)	2374
BstSFI	CTRYAG	2 cut(s)	1463, 2032
BstSLI	GKGCMC	1 cut(s)	854
BstUI	CGCG	7 cut(s)	1385, 1883, 1952, 1973, 2027, 2432, 2523
BstV1I	GCAGC	6 cut(s)	1508, 1581, 1942, 2318, 2321, 2343
BstV2I	GAAGAC	3 cut(s)	454, 1788, 1946
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BstZI	CGGCCG	1 cut(s)	1944
Bsu36I	CCTNAGG	1 cut(s)	1293
BsuI	GTATCC	1 cut(s)	1882
BsuRI	GGCC	8 cut(s)	612, 1356, 1590, 1871, 1946, 1970, 2273, 2417
BtgI	CCRYGG	2 cut(s)	1971, 2069
BtgZI	GCGATG	1 cut(s)	2622
BtsI	GCAGTG	1 cut(s)	1591
BtsIMutI	CAGTG	3 cut(s)	109, 1591, 2690
Cac8I	GCNNGC	3 cut(s)	1948, 2029, 2271
CaiI	CAGNNNCTG	1 cut(s)	2346
CfoI	GCGC	6 cut(s)	638, 1454, 1862, 1883, 1952, 2432
Cfr10I	RCCGGY	5 cut(s)	488, 1565, 1781, 1946, 2630
Cfr42I	CCGCGG	1 cut(s)	1974
CpoI	CGGWCCG	1 cut(s)	2066
CseI	GACGC	1 cut(s)	1519
Csp6I	GTAC	7 cut(s)	276, 719, 1239, 1396, 1713, 2368, 2449
CspAI	ACCGGT	2 cut(s)	488, 1781
CspCI	CAANNNNNGTGG	4 cut(s)	526, 561, 633, 668
CspI	CGGWCCG	1 cut(s)	2066
CviAII	CATG	9 cut(s)	201, 679, 811, 1966, 2353, 2371, 2402, 2560, 2617
CviQI	GTAC	7 cut(s)	276, 719, 1239, 1396, 1713, 2368, 2449
DinI	GGCGCC	1 cut(s)	1861
EaeI	YGGCCR	5 cut(s)	1588, 1869, 1944, 1968, 2271
EagI	CGGCCG	1 cut(s)	1944
Eam1104I	CTCTTC	6 cut(s)	32, 50, 836, 1126, 1196, 1997
EarI	CTCTTC	6 cut(s)	32, 50, 836, 1126, 1196, 1997
EciI	GGCGGA	6 cut(s)	1465, 1901, 2123, 2198, 2272, 2591
Ecl136II	GAGCTC	1 cut(s)	670
EclXI	CGGCCG	1 cut(s)	1944
Eco130I	CCWWGG	2 cut(s)	1649, 2473
Eco24I	GRGCYC	2 cut(s)	672, 926
Eco31I	GGTCTC	2 cut(s)	1745, 1994
Eco47I	GGWCC	8 cut(s)	185, 347, 491, 1139, 1687, 1784, 2066, 2163
Eco52I	CGGCCG	1 cut(s)	1944
Eco53kI	GAGCTC	1 cut(s)	670
Eco57I	CTGAAG	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	1293
Eco88I	CYCGRG	1 cut(s)	527
EcoICRI	GAGCTC	1 cut(s)	670
EcoRII	CCWGG	5 cut(s)	430, 574, 1577, 1683, 2191
EcoT14I	CCWWGG	2 cut(s)	1649, 2473
EcoT38I	GRGCYC	2 cut(s)	672, 926
EgeI	GGCGCC	1 cut(s)	1861
EheI	GGCGCC	1 cut(s)	1861
ErhI	CCWWGG	2 cut(s)	1649, 2473
Esp3I	CGTCTC	1 cut(s)	1768
FaeI	CATG	9 cut(s)	204, 682, 814, 1969, 2356, 2374, 2405, 2563, 2620
FaqI	GGGAC	5 cut(s)	1595, 2023, 2176, 2182, 2357
FatI	CATG	9 cut(s)	200, 678, 810, 1965, 2352, 2370, 2401, 2559, 2616
FauI	CCCGC	1 cut(s)	435
FblI	GTMKAC	2 cut(s)	1113, 1533
FriOI	GRGCYC	2 cut(s)	672, 926
FspBI	CTAG	2 cut(s)	236, 248
GlaI	GCGC	6 cut(s)	637, 1453, 1861, 1882, 1951, 2431
GsaI	CCCAGC	3 cut(s)	163, 382, 935
GsuI	CTGGAG	5 cut(s)	1376, 1468, 1769, 1923, 2141
HaeII	RGCGCY	2 cut(s)	1455, 1863
HaeIII	GGCC	8 cut(s)	612, 1356, 1590, 1871, 1946, 1970, 2273, 2417
HgaI	GACGC	1 cut(s)	1519
HhaI	GCGC	6 cut(s)	638, 1454, 1862, 1883, 1952, 2432
Hin1I	GRCGYC	2 cut(s)	1829, 1860
Hin1II	CATG	9 cut(s)	204, 682, 814, 1969, 2356, 2374, 2405, 2563, 2620
Hin6I	GCGC	6 cut(s)	636, 1452, 1860, 1881, 1950, 2430
HinP1I	GCGC	6 cut(s)	636, 1452, 1860, 1881, 1950, 2430
HincII	GTYRAC	2 cut(s)	1114, 1779
HindII	GTYRAC	2 cut(s)	1114, 1779
HindIII	AAGCTT	1 cut(s)	1601
HpaI	GTTAAC	1 cut(s)	1779
Hpy166II	GTNNAC	4 cut(s)	1114, 1534, 1779, 2518
Hpy8I	GTNNAC	4 cut(s)	1114, 1534, 1779, 2518
Hpy99I	CGWCG	8 cut(s)	1109, 1112, 1115, 1831, 1834, 2006, 2043, 2256
HpyAV	CCTTC	8 cut(s)	102, 176, 554, 1333, 1680, 1829, 2095, 2230
HpyCH4III	ACNGT	4 cut(s)	2070, 2173, 2501, 2555
HpyCH4IV	ACGT	3 cut(s)	1761, 1829, 2295
HpySE526I	ACGT	3 cut(s)	1761, 1829, 2295
Hsp92I	GRCGYC	2 cut(s)	1829, 1860
Hsp92II	CATG	9 cut(s)	204, 682, 814, 1969, 2356, 2374, 2405, 2563, 2620
HspAI	GCGC	6 cut(s)	636, 1452, 1860, 1881, 1950, 2430
KasI	GGCGCC	1 cut(s)	1859
KpnI	GGTACC	1 cut(s)	1716
KroI	GCCGGC	1 cut(s)	1946
KroNI	GCCGGC	1 cut(s)	1948
KspAI	GTTAAC	1 cut(s)	1779
KspI	CCGCGG	1 cut(s)	1974
LmnI	GCTCC	5 cut(s)	604, 929, 1310, 1395, 1904
Lsp1109I	GCAGC	6 cut(s)	1508, 1581, 1942, 2318, 2321, 2343
LweI	GCATC	3 cut(s)	68, 1269, 2178
MaeI	CTAG	2 cut(s)	236, 248
MaeII	ACGT	3 cut(s)	1761, 1829, 2295
MaeIII	GTNAC	7 cut(s)	332, 780, 1922, 2440, 2537, 2555, 2672
MbiI	CCGCTC	1 cut(s)	330
MfeI	CAATTG	2 cut(s)	650, 722
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	3 cut(s)	672, 854, 926
MlsI	TGGCCA	2 cut(s)	1590, 1871
MluNI	TGGCCA	2 cut(s)	1590, 1871
Mly113I	GGCGCC	1 cut(s)	1860
MlyI	GAGTC	2 cut(s)	510, 2621
MmeI	TCCRAC	6 cut(s)	394, 538, 1149, 1850, 2021, 2275
Mox20I	TGGCCA	2 cut(s)	1590, 1871
MroNI	GCCGGC	1 cut(s)	1946
MscI	TGGCCA	2 cut(s)	1590, 1871
MseI	TTAA	7 cut(s)	419, 630, 806, 1458, 1758, 1770, 1778
MslI	CAYNNNNRTG	4 cut(s)	677, 2210, 2499, 2621
Msp20I	TGGCCA	2 cut(s)	1590, 1871
MspA1I	CMGCKG	2 cut(s)	287, 1973
MunI	CAATTG	2 cut(s)	650, 722
Mva1269I	GAATGC	1 cut(s)	1572
MvaI	CCWGG	5 cut(s)	432, 576, 1579, 1685, 2193
MvnI	CGCG	7 cut(s)	1385, 1883, 1952, 1973, 2027, 2432, 2523
NaeI	GCCGGC	1 cut(s)	1948
NarI	GGCGCC	1 cut(s)	1860
NciI	CCSGG	5 cut(s)	602, 778, 1840, 2008, 2167
NgoMIV	GCCGGC	1 cut(s)	1946
NlaIII	CATG	9 cut(s)	204, 682, 814, 1969, 2356, 2374, 2405, 2563, 2620
NmeAIII	GCCGAG	4 cut(s)	1065, 1353, 2299, 2559
NmuCI	GTSAC	5 cut(s)	780, 1922, 2440, 2555, 2672
NspI	RCATGY	1 cut(s)	2374
NspV	TTCGAA	1 cut(s)	558
OliI	CACNNNNGTG	1 cut(s)	2499
PaeR7I	CTCGAG	1 cut(s)	527
PasI	CCCWGGG	1 cut(s)	1578
PcsI	WCGNNNNNNNCGW	4 cut(s)	1110, 1949, 1992, 2520
PctI	GAATGC	1 cut(s)	1572
PdiI	GCCGGC	1 cut(s)	1948
PfeI	GAWTC	8 cut(s)	210, 313, 387, 891, 910, 1034, 1203, 1254
PflMI	CCANNNNNTGG	2 cut(s)	581, 2425
PfoI	TCCNGGA	2 cut(s)	600, 1838
PinAI	ACCGGT	2 cut(s)	488, 1781
PleI	GAGTC	2 cut(s)	510, 2620
PluTI	GGCGCC	1 cut(s)	1863
PpsI	GAGTC	2 cut(s)	510, 2620
Psp124BI	GAGCTC	1 cut(s)	672
Psp6I	CCWGG	5 cut(s)	430, 574, 1577, 1683, 2191
PspFI	CCCAGC	3 cut(s)	159, 378, 931
PspGI	CCWGG	5 cut(s)	430, 574, 1577, 1683, 2191
PstI	CTGCAG	1 cut(s)	1467
PstNI	CAGNNNCTG	1 cut(s)	2346
PsuI	RGATCY	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	7 cut(s)	277, 720, 1240, 1397, 1714, 2369, 2450
RsaNI	GTAC	7 cut(s)	276, 719, 1239, 1396, 1713, 2368, 2449
RseI	CAYNNNNRTG	4 cut(s)	677, 2210, 2499, 2621
Rsr2I	CGGWCCG	1 cut(s)	2066
RsrII	CGGWCCG	1 cut(s)	2066
SacI	GAGCTC	1 cut(s)	672
SacII	CCGCGG	1 cut(s)	1974
SalI	GTCGAC	1 cut(s)	1112
SaqAI	TTAA	7 cut(s)	419, 630, 806, 1458, 1758, 1770, 1778
SchI	GAGTC	2 cut(s)	510, 2621
SduI	GDGCHC	3 cut(s)	672, 854, 926
SfaNI	GCATC	3 cut(s)	68, 1269, 2178
SfcI	CTRYAG	2 cut(s)	1463, 2032
SfoI	GGCGCC	1 cut(s)	1861
Sfr274I	CTCGAG	1 cut(s)	527
Sfr303I	CCGCGG	1 cut(s)	1974
SfuI	TTCGAA	1 cut(s)	558
SgrBI	CCGCGG	1 cut(s)	1974
SinI	GGWCC	8 cut(s)	185, 347, 491, 1139, 1687, 1784, 2066, 2163
SlaI	CTCGAG	1 cut(s)	527
SmiMI	CAYNNNNRTG	4 cut(s)	677, 2210, 2499, 2621
SmlI	CTYRAG	8 cut(s)	131, 325, 446, 454, 501, 527, 1612, 2528
SmoI	CTYRAG	8 cut(s)	131, 325, 446, 454, 501, 527, 1612, 2528
SspDI	GGCGCC	1 cut(s)	1859
SspI	AATATT	2 cut(s)	568, 589
SspMI	CTAG	2 cut(s)	236, 248
SstI	GAGCTC	1 cut(s)	672
StyI	CCWWGG	2 cut(s)	1649, 2473
TaaI	ACNGT	4 cut(s)	2070, 2173, 2501, 2555
TaiI	ACGT	3 cut(s)	1764, 1832, 2298
TaqI	TCGA	9 cut(s)	305, 528, 558, 897, 1113, 1329, 1542, 1724, 1731
TaqII	GACCGA	1 cut(s)	1976
TatI	WGTACW	2 cut(s)	1238, 2367
TauI	GCSGC	6 cut(s)	938, 1385, 1860, 1886, 1973, 1976
TfiI	GAWTC	8 cut(s)	210, 313, 387, 891, 910, 1034, 1203, 1254
Tru1I	TTAA	7 cut(s)	419, 630, 806, 1458, 1758, 1770, 1778
Tru9I	TTAA	7 cut(s)	419, 630, 806, 1458, 1758, 1770, 1778
TscAI	CASTG	3 cut(s)	109, 1598, 2690
TseFI	GTSAC	5 cut(s)	780, 1922, 2440, 2555, 2672
TseI	GCWGC	6 cut(s)	1521, 1569, 1930, 2331, 2334, 2356
Tsp45I	GTSAC	5 cut(s)	780, 1922, 2440, 2555, 2672
TspDTI	ATGAA	5 cut(s)	17, 189, 1504, 1811, 2650
TspGWI	ACGGA	1 cut(s)	1782
TspRI	CASTG	3 cut(s)	109, 1598, 2690
Van91I	CCANNNNNTGG	2 cut(s)	581, 2425
VpaK11BI	GGWCC	8 cut(s)	185, 347, 491, 1139, 1687, 1784, 2066, 2163
XapI	RAATTY	7 cut(s)	82, 291, 1225, 1656, 1726, 2098, 2422
XbaI	TCTAGA	1 cut(s)	247
XceI	RCATGY	1 cut(s)	2374
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1443, 1681, 2383
XhoI	CTCGAG	1 cut(s)	527
XmiI	GTMKAC	2 cut(s)	1113, 1533
XspI	CTAG	2 cut(s)	236, 248
ZraI	GACGTC	1 cut(s)	1830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.