Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026266.1

Orthogroup ID

OG0018480

Physical Location & Seq

Genomic Coordinates Forward (+)

689 .. 2011

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026266.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

atggataagccttacacctgcaagatctgcaacaagcgcttcaaaggtggcaaggccatgggcggacacatgagatctcatctcgccaagcttccgctccctcccaaacaccctccacctcccccgccgccgccagcgactccttctccgccgcagcggctcgcacactcgccggagttttcatcctcctcgactcatcataaccttagcaacaaccacatcttccgaatccggaacttaaacagcagcgtgagcctcatgcagatgatgatgatgcaatctcctccgccgtctacggccccggccccggctccggcgactattctgaagtaccgggaagttgttgttgctgctgctgctgcggctcctccgtcgtcgatggactcggcggtggagagcgacagcaccgagtcgcagcagaagaacctgacccggagaagatccaaacgtcgtcgtaaggtgattgtgagtgcggcgccgccgcccctggaggccgccgaggagcagcaggtaagttccgtttccgatactttctcaccggaagattgtgctctctctcttatgatgctctcaagggacacatggaaaatgaaagtcacaaatgaactagcttatggtgatgaagaatctcttgaggaagaacaagaggaggaagtggtggaagaagaagaggaggaagacgacgacgtcgttttcatccccaggactactcccaagagtacttcttctaataatcaaggggggaagtacaagtgtgatacttgcaagaaagagttccaatcctaccaagcactcggcggccaccgagccagccacaagagagtccggcaccaagtcttagaggaagacgacgatgacgtggaagtcggagatgatgattccgaggaggatgaggtgttggcagtaggaggaagaggaggtggcaatggccgtggcagtggtaatggtggtggtggtggtgtccaggggtataatgggaagtctgctgttgtggagcatcctcctcccagggtatttgaatgcccattttgtttcaagctgtttgattctggtcaagcacttggtgggcacaagaaggtgcactattataataataatactaataacaatactagttataataataccaacaacaacagcagcagcagcaatgtcccagctgctagtagtaccaccaacaccaataccaacaccaacaatgctagggcctcttcctcctcagcaaacgtatcttctgcaaactatggaggcaacaatctggtgattgatctcaatctcccagcaccagaagaagagttcgacttttcgacaatttcagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

440

Amino Acids

47.65

Weight (kDa)

5.46

Isoelectric Point (pI)

67.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018480)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27290
rosa_chinensis	RchiOBHm_Chr1g0374121
rosa_laevigata	RLG00000026761
rosa_multiflora	Rmu_sc0020614.1_g000003 Rmu_sc0026266.1_g000001
rosa_rugosa	Rorug01G0380800
rosa_samantha	Rh1AG391700 Rh1CG368700 Rh1DG386400
rosa_wichuraiana	Rw1G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1089, 1119
AarI	CACCTGC	1 cut(s)	26
AasI	GACNNNNNNGTC	2 cut(s)	686, 863
AatII	GACGTC	1 cut(s)	690
Acc36I	ACCTGC	2 cut(s)	26, 499
AccB1I	GGYRCC	2 cut(s)	475, 828
AccBSI	CCGCTC	1 cut(s)	97
AccI	GTMKAC	1 cut(s)	293
AccIII	TCCGGA	1 cut(s)	231
AclWI	GGATC	1 cut(s)	435
AcoI	YGGCCR	2 cut(s)	799, 928
AcuI	CTGAAG	1 cut(s)	347
AcyI	GRCGYC	2 cut(s)	476, 687
AdeI	CACNNNGTG	1 cut(s)	1064
AfaI	GTAC	4 cut(s)	332, 721, 749, 1171
AfeI	AGCGCT	1 cut(s)	38
AfiI	CCNNNNNNNGG	2 cut(s)	307, 313
AgsI	TTSAA	3 cut(s)	43, 1019, 1036
AhlI	ACTAGT	1 cut(s)	1112
AjiI	CACGTC	1 cut(s)	859
AjnI	CCWGG	4 cut(s)	486, 701, 963, 1007
AluBI	AGCT	4 cut(s)	91, 611, 1039, 1160
AluI	AGCT	4 cut(s)	91, 611, 1039, 1160
Alw21I	GWGCWC	2 cut(s)	553, 1083
Alw44I	GTGCAC	1 cut(s)	1079
AlwI	GGATC	1 cut(s)	435
Aor13HI	TCCGGA	1 cut(s)	231
Aor51HI	AGCGCT	1 cut(s)	38
AoxI	GGCC	7 cut(s)	54, 297, 303, 492, 799, 928, 1206
ApaLI	GTGCAC	1 cut(s)	1079
Asp700I	GAANNNNTTC	1 cut(s)	773
AspLEI	GCGC	2 cut(s)	39, 478
AspS9I	GGNCC	3 cut(s)	298, 304, 1206
AsuC2I	CCSGG	4 cut(s)	302, 308, 335, 433
AsuHPI	GGTGA	4 cut(s)	472, 528, 629, 1273
BaeGI	GKGCMC	2 cut(s)	1071, 1083
BanI	GGYRCC	2 cut(s)	475, 828
BbsI	GAAGAC	2 cut(s)	684, 852
Bbv12I	GWGCWC	2 cut(s)	553, 1083
BbvCI	CCTCAGC	1 cut(s)	1219
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	3 cut(s)	274, 312, 915
BciT130I	CCWGG	4 cut(s)	488, 703, 965, 1009
BcnI	CCSGG	4 cut(s)	302, 308, 335, 433
BcuI	ACTAGT	1 cut(s)	1112
BfaI	CTAG	4 cut(s)	608, 1113, 1164, 1203
BfoI	RGCGCY	2 cut(s)	40, 479
BfuAI	ACCTGC	2 cut(s)	26, 499
BglI	GCCNNNNNGGC	1 cut(s)	157
BglII	AGATCT	2 cut(s)	24, 74
BmcAI	AGTACT	1 cut(s)	721
Bme1390I	CCNGG	8 cut(s)	302, 308, 335, 433, 488, 703, 965, 1009
BmgBI	CACGTC	1 cut(s)	859
BmgT120I	GGNCC	3 cut(s)	298, 304, 1206
BmiI	GGNNCC	6 cut(s)	300, 306, 312, 366, 477, 830
BmrFI	CCNGG	8 cut(s)	302, 308, 335, 433, 488, 703, 965, 1009
BmsI	GCATC	3 cut(s)	264, 555, 1006
BpiI	GAAGAC	2 cut(s)	684, 852
BpmI	CTGGAG	1 cut(s)	509
Bpu10I	CCTNAGC	2 cut(s)	206, 1219
BpuEI	CTTGAG	2 cut(s)	556, 653
BpuMI	CCSGG	4 cut(s)	302, 308, 335, 433
BsaBI	GATNNNNATC	1 cut(s)	1272
BsaHI	GRCGYC	2 cut(s)	476, 687
BsaWI	WCCGGW	2 cut(s)	231, 538
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 313
Bse3DI	GCAATG	2 cut(s)	931, 1156
Bse8I	GATNNNNATC	1 cut(s)	1272
BseAI	TCCGGA	1 cut(s)	231
BseBI	CCWGG	4 cut(s)	488, 703, 965, 1009
BseGI	GGATG	4 cut(s)	182, 696, 895, 997
BseJI	GATNNNNATC	1 cut(s)	1272
BseLI	CCNNNNNNNGG	2 cut(s)	307, 313
BseMI	GCAATG	2 cut(s)	931, 1156
BseMII	CTCAG	1 cut(s)	1233
BseSI	GKGCMC	2 cut(s)	1071, 1083
BseYI	CCCAGC	2 cut(s)	1156, 1279
BshFI	GGCC	7 cut(s)	56, 299, 305, 494, 801, 930, 1208
BshNI	GGYRCC	2 cut(s)	475, 828
BsiHKAI	GWGCWC	2 cut(s)	553, 1083
BsiSI	CCGG	9 cut(s)	173, 232, 302, 308, 314, 334, 433, 539, 826
BslFI	GGGAC	2 cut(s)	590, 1139
BslI	CCNNNNNNNGG	2 cut(s)	307, 313
BsmFI	GGGAC	2 cut(s)	590, 1139
BsmI	GAATGC	1 cut(s)	1025
BsnI	GGCC	7 cut(s)	56, 299, 305, 494, 801, 930, 1208
Bsp1286I	GDGCHC	3 cut(s)	553, 1071, 1083
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	24, 74, 440, 1267
Bsp19I	CCATGG	1 cut(s)	57
BspANI	GGCC	7 cut(s)	56, 299, 305, 494, 801, 930, 1208
BspCNI	CTCAG	1 cut(s)	1232
BspEI	TCCGGA	1 cut(s)	231
BspLI	GGNNCC	6 cut(s)	300, 306, 312, 366, 477, 830
BspMI	ACCTGC	2 cut(s)	26, 499
BspPI	GGATC	1 cut(s)	435
BspT107I	GGYRCC	2 cut(s)	475, 828
BsrBI	CCGCTC	1 cut(s)	97
BsrDI	GCAATG	2 cut(s)	931, 1156
BssMI	GATC	4 cut(s)	24, 74, 440, 1267
BssNI	GRCGYC	2 cut(s)	476, 687
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	4 cut(s)	488, 703, 965, 1009
Bst6I	CTCTTC	4 cut(s)	663, 907, 1216, 1287
BstACI	GRCGYC	2 cut(s)	476, 687
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	135, 162, 811
BstDEI	CTNAG	3 cut(s)	206, 838, 1219
BstDSI	CCRYGG	2 cut(s)	57, 931
BstF5I	GGATG	4 cut(s)	182, 696, 895, 997
BstH2I	RGCGCY	2 cut(s)	40, 479
BstHHI	GCGC	2 cut(s)	39, 478
BstKTI	GATC	4 cut(s)	27, 77, 443, 1270
BstMBI	GATC	4 cut(s)	24, 74, 440, 1267
BstMWI	GCNNNNNNNGC	8 cut(s)	27, 36, 157, 252, 356, 359, 362, 1146
BstNI	CCWGG	4 cut(s)	488, 703, 965, 1009
BstSCI	CCNGG	8 cut(s)	300, 306, 333, 431, 486, 701, 963, 1007
BstSLI	GKGCMC	2 cut(s)	1071, 1083
BstV2I	GAAGAC	2 cut(s)	684, 852
BstX2I	RGATCY	3 cut(s)	24, 74, 440
BstYI	RGATCY	3 cut(s)	24, 74, 440
BsuRI	GGCC	7 cut(s)	56, 299, 305, 494, 801, 930, 1208
BtgI	CCRYGG	2 cut(s)	57, 931
BtrI	CACGTC	1 cut(s)	859
BtsCI	GGATG	4 cut(s)	182, 696, 895, 997
BtsI	GCAGTG	1 cut(s)	943
BtsIMutI	CAGTG	1 cut(s)	943
BveI	ACCTGC	2 cut(s)	26, 499
Cac8I	GCNNGC	3 cut(s)	135, 162, 811
CfoI	GCGC	2 cut(s)	39, 478
Cfr13I	GGNCC	3 cut(s)	298, 304, 1206
Csp6I	GTAC	4 cut(s)	331, 720, 748, 1170
CspCI	CAANNNNNGTGG	2 cut(s)	913, 948
CviAII	CATG	4 cut(s)	58, 70, 259, 582
CviQI	GTAC	4 cut(s)	331, 720, 748, 1170
DdeI	CTNAG	3 cut(s)	206, 838, 1219
DinI	GGCGCC	1 cut(s)	477
DpnI	GATC	4 cut(s)	26, 76, 442, 1269
DpnII	GATC	4 cut(s)	24, 74, 440, 1267
DraIII	CACNNNGTG	1 cut(s)	1064
DrdI	GACNNNNNNGTC	2 cut(s)	686, 863
DseDI	GACNNNNNNGTC	2 cut(s)	686, 863
EaeI	YGGCCR	2 cut(s)	799, 928
Eam1104I	CTCTTC	4 cut(s)	663, 907, 1216, 1287
EarI	CTCTTC	4 cut(s)	663, 907, 1216, 1287
EciI	GGCGGA	3 cut(s)	78, 138, 276
Eco130I	CCWWGG	1 cut(s)	57
Eco47III	AGCGCT	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	1206
EcoRII	CCWGG	4 cut(s)	486, 701, 963, 1007
EcoT14I	CCWWGG	1 cut(s)	57
EgeI	GGCGCC	1 cut(s)	477
EheI	GGCGCC	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	4 cut(s)	61, 73, 262, 585
FalI	AAGNNNNNCTT	2 cut(s)	615, 647
FaqI	GGGAC	2 cut(s)	590, 1139
FatI	CATG	4 cut(s)	57, 69, 258, 581
FauI	CCCGC	1 cut(s)	132
FblI	GTMKAC	1 cut(s)	293
FokI	GGATG	4 cut(s)	169, 683, 902, 984
FspBI	CTAG	4 cut(s)	608, 1113, 1164, 1203
GlaI	GCGC	2 cut(s)	38, 477
GsaI	CCCAGC	2 cut(s)	1160, 1283
GsuI	CTGGAG	1 cut(s)	509
HaeII	RGCGCY	2 cut(s)	40, 479
HaeIII	GGCC	7 cut(s)	56, 299, 305, 494, 801, 930, 1208
HapII	CCGG	9 cut(s)	173, 232, 302, 308, 314, 334, 433, 539, 826
HhaI	GCGC	2 cut(s)	39, 478
Hin1I	GRCGYC	2 cut(s)	476, 687
Hin1II	CATG	4 cut(s)	61, 73, 262, 585
Hin6I	GCGC	2 cut(s)	37, 476
HinP1I	GCGC	2 cut(s)	37, 476
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	9 cut(s)	139, 193, 228, 383, 410, 626, 822, 878, 1046
HpaII	CCGG	9 cut(s)	173, 232, 302, 308, 314, 334, 433, 539, 826
HphI	GGTGA	4 cut(s)	472, 528, 629, 1273
Hpy166II	GTNNAC	2 cut(s)	294, 1081
Hpy188I	TCNGA	6 cut(s)	227, 327, 526, 869, 883, 1318
Hpy188III	TCNNGA	2 cut(s)	232, 632
Hpy8I	GTNNAC	2 cut(s)	294, 1081
Hpy99I	CGWCG	8 cut(s)	376, 379, 453, 456, 686, 689, 692, 854
HpyAV	CCTTC	2 cut(s)	153, 1069
HpyCH4IV	ACGT	4 cut(s)	448, 687, 858, 1227
HpyCH4V	TGCA	7 cut(s)	21, 30, 262, 277, 765, 1081, 1238
HpyF10VI	GCNNNNNNNGC	8 cut(s)	27, 36, 157, 252, 356, 359, 362, 1146
HpyF3I	CTNAG	3 cut(s)	206, 838, 1219
HpySE526I	ACGT	4 cut(s)	448, 687, 858, 1227
Hsp92I	GRCGYC	2 cut(s)	476, 687
Hsp92II	CATG	4 cut(s)	61, 73, 262, 585
HspAI	GCGC	2 cut(s)	37, 476
KasI	GGCGCC	1 cut(s)	475
Kpn2I	TCCGGA	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	24, 74, 440, 1267
LmnI	GCTCC	5 cut(s)	102, 316, 370, 502, 994
LweI	GCATC	3 cut(s)	264, 555, 1006
MaeI	CTAG	4 cut(s)	608, 1113, 1164, 1203
MaeII	ACGT	4 cut(s)	448, 687, 858, 1227
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	4 cut(s)	26, 76, 442, 1269
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	4 cut(s)	24, 74, 440, 1267
MflI	RGATCY	3 cut(s)	24, 74, 440
MhlI	GDGCHC	3 cut(s)	553, 1071, 1083
MluCI	AATT	1 cut(s)	1311
Mly113I	GGCGCC	1 cut(s)	476
MlyI	GAGTC	5 cut(s)	133, 187, 377, 419, 831
MmeI	TCCRAC	1 cut(s)	847
MroI	TCCGGA	1 cut(s)	231
MroXI	GAANNNNTTC	1 cut(s)	773
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	157, 1160
MspI	CCGG	9 cut(s)	173, 232, 302, 308, 314, 334, 433, 539, 826
MspR9I	CCNGG	8 cut(s)	302, 308, 335, 433, 488, 703, 965, 1009
Mva1269I	GAATGC	1 cut(s)	1025
MvaI	CCWGG	4 cut(s)	488, 703, 965, 1009
MwoI	GCNNNNNNNGC	8 cut(s)	27, 36, 157, 252, 356, 359, 362, 1146
NarI	GGCGCC	1 cut(s)	476
NciI	CCSGG	4 cut(s)	302, 308, 335, 433
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	4 cut(s)	24, 74, 440, 1267
NlaIII	CATG	4 cut(s)	61, 73, 262, 585
NlaIV	GGNNCC	6 cut(s)	300, 306, 312, 366, 477, 830
NmeAIII	GCCGAG	3 cut(s)	365, 523, 774
NmuCI	GTSAC	1 cut(s)	595
PaqCI	CACCTGC	1 cut(s)	26
PasI	CCCWGGG	1 cut(s)	1008
PcsI	WCGNNNNNNNCGW	2 cut(s)	687, 855
PctI	GAATGC	1 cut(s)	1025
PdmI	GAANNNNTTC	1 cut(s)	773
PfeI	GAWTC	4 cut(s)	228, 626, 878, 1046
PflFI	GACNNNGTC	1 cut(s)	686
PleI	GAGTC	5 cut(s)	133, 187, 377, 418, 830
PluTI	GGCGCC	1 cut(s)	479
PpsI	GAGTC	5 cut(s)	133, 187, 377, 418, 830
PsiI	TTATAA	2 cut(s)	1089, 1119
Psp6I	CCWGG	4 cut(s)	486, 701, 963, 1007
PspFI	CCCAGC	2 cut(s)	1156, 1279
PspGI	CCWGG	4 cut(s)	486, 701, 963, 1007
PspN4I	GGNNCC	6 cut(s)	300, 306, 312, 366, 477, 830
PspPI	GGNCC	3 cut(s)	298, 304, 1206
PsuI	RGATCY	3 cut(s)	24, 74, 440
PsyI	GACNNNGTC	1 cut(s)	686
PvuII	CAGCTG	1 cut(s)	1160
RsaI	GTAC	4 cut(s)	332, 721, 749, 1171
RsaNI	GTAC	4 cut(s)	331, 720, 748, 1170
RseI	CAYNNNNRTG	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	239
Sau3AI	GATC	4 cut(s)	24, 74, 440, 1267
Sau96I	GGNCC	3 cut(s)	298, 304, 1206
ScaI	AGTACT	1 cut(s)	721
SchI	GAGTC	5 cut(s)	133, 187, 377, 419, 831
ScrFI	CCNGG	8 cut(s)	302, 308, 335, 433, 488, 703, 965, 1009
SduI	GDGCHC	3 cut(s)	553, 1071, 1083
SfaNI	GCATC	3 cut(s)	264, 555, 1006
SfoI	GGCGCC	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	2 cut(s)	571, 632
SmoI	CTYRAG	2 cut(s)	571, 632
SpeI	ACTAGT	1 cut(s)	1112
Sse9I	AATT	1 cut(s)	1311
SspDI	GGCGCC	1 cut(s)	475
SspMI	CTAG	4 cut(s)	608, 1113, 1164, 1203
StyD4I	CCNGG	8 cut(s)	300, 306, 333, 431, 486, 701, 963, 1007
StyI	CCWWGG	1 cut(s)	57
TaiI	ACGT	4 cut(s)	451, 690, 861, 1230
TaqI	TCGA	4 cut(s)	191, 377, 1299, 1307
TasI	AATT	1 cut(s)	1311
TatI	WGTACW	2 cut(s)	719, 747
TfiI	GAWTC	4 cut(s)	228, 626, 878, 1046
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	1 cut(s)	943
TseFI	GTSAC	1 cut(s)	595
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	5 cut(s)	171, 605, 618, 636, 685
TspGWI	ACGGA	2 cut(s)	360, 508
TspRI	CASTG	1 cut(s)	943
Tth111I	GACNNNGTC	1 cut(s)	686
VneI	GTGCAC	1 cut(s)	1079
XcmI	CCANNNNNNNNNTGG	1 cut(s)	971
XmiI	GTMKAC	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	773
XspI	CTAG	4 cut(s)	608, 1113, 1164, 1203
ZraI	GACGTC	1 cut(s)	688
ZrmI	AGTACT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.