RLG00000026761

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
5697294 .. 5698634
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026761

Sequence Viewer

Length: 1341 bp
ATGGATAAGCCTTACACCTGCAAGATCTGCAACAAGCGCTTCAAAGGTGGCAAGGCCATGGGCGGACACATGAGATCTCATCTCGCCAAGCTTCCGCTCCCTCCCAAACAGCCTCCACCTCCCCCGCCGCCGCCAGCGACTCCTTCTCCTCCTCAGCGGCTCGCTCACTCGCCGGAGTTTTCATCCTCCTCGACTCATCATAACCTTAGCAACCACCACCACCACCACAACAACATCTTCCGAATCCGAAACTTAAACAGTAGCGTGAGCCTCATGCAGATGATGATGATGCAATCTCCTCCGCCGTCTCCTGCCCCGGCCCCTTCTCCGGCGACTATTCTGAAGTACCGGGAAGTTGTTGTTGCTGCAGCTGCTGCGGCTCCGCCGTCGTCTATGGACTCGGCGGTGGAGAGCGACAGCACCGAGTCGCACCAGAAGAACCTGACCCGGAGAAGATCCAAACGTCGTCGTAAGGTGATTGTGAGTGCGGCGCCGCCGCCCCTGGAGGCAGCAGAGGAGCAGCAGGTAAGTTCCGTTTCCGATACTTTCTCACCGGAAGATTGTGCTCTCTCTCTTATGATGCTCTCAAGGGACACATGGAAAATGAAAGTCACAAATGAACTAGCTTATGGTGATGAAGAATCTCTTGAGGAAGAACAAGGGGAGGAAGTGATGGAAGAAGAAGAGGAGGAAGAGGACGACGTCGTTTTCATCCCCAGGACTACTCCCAAGAGTACTTCTTCTAATAATCAAGGGGGGAAGTACAAGTGTGATACTTGCAAGAAAGAGTTCCGATCCTACCAAGCACTCGGCGGCCACCGAGCCAGCCACAAGAGAGTCCGGCACCAAGTCTTCGAGGAAGACGACGATGACGTGGAAGTCGGCGATGATGATTCCGAGGAGGATGAGGTGTTGGCAGTAGGAGGAAGAGGAGGTGGCAATGGCCGTGGCAGTGGTAATGGTAATGGTGGTGGTGGTGGTGGAGGAAGTGGTGTCCAGGGGTATAATGGGAAGTCTGCTATTGTGGAGCATCCTCCTCCCAGGGTATTTGAATGCCCATTTTGTTTCAAGCTGTTTGATTCTGGTCAAGCACTTGGTGGGCACAAGAAGGTGCATTACTATAATAATACTAATAACAATACTAGTTGTTATAATACCAACAACAACAGCAGCAGCAGCAATGTCCCAGCTGCGAGTAGTACCACCAACACCAACAATGCTAGGGCCTCTTCCTCCTCAGCAAATGTATCTTCTGCAAACTATGGAGGCAACAATTTGGTGATTGATCTCAATCTCCCAGCACCAGAAGAAGAGTTCGACTTTTCGACAATTTCAGATTAG

Protein Analysis

447

Amino Acids

48.25

Weight (kDa)

5.81

Isoelectric Point (pI)

70.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 5 - 29 4e-08 C2H2-type zinc finger
zf-C2H2_6 PF13912 255 - 279 6.3e-12 C2H2-type zinc finger
zf-C2H2_6 PF13912 349 - 372 6.8e-07 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27290
rosa_chinensis RchiOBHm_Chr1g0374121
rosa_laevigata RLG00000026761
rosa_multiflora Rmu_sc0020614.1_g000003 Rmu_sc0026266.1_g000001
rosa_rugosa Rorug01G0380800
rosa_samantha Rh1AG391700 Rh1CG368700 Rh1DG386400
rosa_wichuraiana Rw1G034390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1152
AarI CACCTGC 1 cut(s) 26
AasI GACNNNNNNGTC 1 cut(s) 878
AatII GACGTC 1 cut(s) 705
Acc36I ACCTGC 2 cut(s) 26, 514
AccB1I GGYRCC 2 cut(s) 490, 843
AccBSI CCGCTC 1 cut(s) 97
AclWI GGATC 2 cut(s) 450, 789
AcoI YGGCCR 2 cut(s) 814, 943
AcuI CTGAAG 1 cut(s) 362
AcyI GRCGYC 2 cut(s) 491, 702
AdeI CACNNNGTG 1 cut(s) 1097
AfaI GTAC 4 cut(s) 347, 736, 764, 1201
AfeI AGCGCT 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 3 cut(s) 43, 1052, 1069
AhlI ACTAGT 1 cut(s) 1142
AjiI CACGTC 1 cut(s) 874
AjnI CCWGG 4 cut(s) 501, 716, 996, 1040
AluBI AGCT 5 cut(s) 91, 371, 626, 1072, 1190
AluI AGCT 5 cut(s) 91, 371, 626, 1072, 1190
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 2 cut(s) 450, 789
AlwNI CAGNNNCTG 1 cut(s) 374
Aor51HI AGCGCT 1 cut(s) 38
AoxI GGCC 5 cut(s) 54, 318, 814, 943, 1224
Asp700I GAANNNNTTC 1 cut(s) 788
AspLEI GCGC 2 cut(s) 39, 493
AspS9I GGNCC 2 cut(s) 319, 1224
AsuC2I CCSGG 3 cut(s) 317, 350, 448
AsuHPI GGTGA 4 cut(s) 487, 543, 644, 1291
BaeGI GKGCMC 1 cut(s) 1104
BanI GGYRCC 2 cut(s) 490, 843
BarI GAAGNNNNNNTAC 2 cut(s) 1100, 1132
BbsI GAAGAC 2 cut(s) 844, 867
Bbv12I GWGCWC 1 cut(s) 568
BbvCI CCTCAGC 2 cut(s) 153, 1237
BccI CCATC 1 cut(s) 667
BceAI ACGGC 3 cut(s) 289, 370, 930
BciT130I CCWGG 4 cut(s) 503, 718, 998, 1042
BcnI CCSGG 3 cut(s) 317, 350, 448
BcoDI GTCTC 1 cut(s) 312
BcuI ACTAGT 1 cut(s) 1142
BfaI CTAG 3 cut(s) 623, 1143, 1221
BfmI CTRYAG 1 cut(s) 366
BfoI RGCGCY 2 cut(s) 40, 494
BfuAI ACCTGC 2 cut(s) 26, 514
BglII AGATCT 2 cut(s) 24, 74
BmcAI AGTACT 1 cut(s) 736
Bme1390I CCNGG 7 cut(s) 317, 350, 448, 503, 718, 998, 1042
BmgBI CACGTC 1 cut(s) 874
BmgT120I GGNCC 2 cut(s) 319, 1224
BmiI GGNNCC 4 cut(s) 321, 381, 492, 845
BmrFI CCNGG 7 cut(s) 317, 350, 448, 503, 718, 998, 1042
BmsI GCATC 3 cut(s) 279, 570, 1039
BpiI GAAGAC 2 cut(s) 844, 867
BpmI CTGGAG 1 cut(s) 524
Bpu10I CCTNAGC 3 cut(s) 153, 206, 1237
BpuEI CTTGAG 2 cut(s) 571, 668
BpuMI CCSGG 3 cut(s) 317, 350, 448
BsaBI GATNNNNATC 1 cut(s) 1290
BsaHI GRCGYC 2 cut(s) 491, 702
BsaJI CCNNGG 9 cut(s) 57, 315, 501, 716, 897, 946, 997, 1040, 1041
BsaWI WCCGGW 1 cut(s) 553
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse3DI GCAATG 2 cut(s) 946, 1186
Bse8I GATNNNNATC 1 cut(s) 1290
BseBI CCWGG 4 cut(s) 503, 718, 998, 1042
BseDI CCNNGG 9 cut(s) 57, 315, 501, 716, 897, 946, 997, 1040, 1041
BseGI GGATG 4 cut(s) 182, 711, 910, 1030
BseJI GATNNNNATC 1 cut(s) 1290
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 2 cut(s) 946, 1186
BseMII CTCAG 2 cut(s) 167, 1251
BseSI GKGCMC 1 cut(s) 1104
BseYI CCCAGC 2 cut(s) 1186, 1297
BshFI GGCC 5 cut(s) 56, 320, 816, 945, 1226
BshNI GGYRCC 2 cut(s) 490, 843
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 7 cut(s) 173, 317, 329, 349, 448, 554, 841
BslFI GGGAC 2 cut(s) 605, 1169
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 312
BsmBI CGTCTC 1 cut(s) 312
BsmFI GGGAC 2 cut(s) 605, 1169
BsmI GAATGC 1 cut(s) 1058
BsnI GGCC 5 cut(s) 56, 320, 816, 945, 1226
Bsp1286I GDGCHC 2 cut(s) 568, 1104
Bsp143I GATC 5 cut(s) 24, 74, 455, 794, 1285
Bsp19I CCATGG 1 cut(s) 57
BspANI GGCC 5 cut(s) 56, 320, 816, 945, 1226
BspCNI CTCAG 2 cut(s) 166, 1250
BspLI GGNNCC 4 cut(s) 321, 381, 492, 845
BspMAI CTGCAG 1 cut(s) 370
BspMI ACCTGC 2 cut(s) 26, 514
BspPI GGATC 2 cut(s) 450, 789
BspT107I GGYRCC 2 cut(s) 490, 843
BsrBI CCGCTC 1 cut(s) 97
BsrDI GCAATG 2 cut(s) 946, 1186
BssECI CCNNGG 9 cut(s) 57, 315, 501, 716, 897, 946, 997, 1040, 1041
BssMI GATC 5 cut(s) 24, 74, 455, 794, 1285
BssNI GRCGYC 2 cut(s) 491, 702
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 4 cut(s) 503, 718, 998, 1042
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 5 cut(s) 678, 687, 922, 1234, 1305
BstACI GRCGYC 2 cut(s) 491, 702
BstAPI GCANNNNNTGC 2 cut(s) 27, 374
BstC8I GCNNGC 3 cut(s) 135, 162, 826
BstDEI CTNAG 3 cut(s) 153, 206, 1237
BstDSI CCRYGG 2 cut(s) 57, 946
BstF5I GGATG 4 cut(s) 182, 711, 910, 1030
BstH2I RGCGCY 2 cut(s) 40, 494
BstHHI GCGC 2 cut(s) 39, 493
BstKTI GATC 5 cut(s) 27, 77, 458, 797, 1288
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 5 cut(s) 24, 74, 455, 794, 1285
BstMWI GCNNNNNNNGC 6 cut(s) 27, 36, 371, 374, 377, 1176
BstNI CCWGG 4 cut(s) 503, 718, 998, 1042
BstSCI CCNGG 7 cut(s) 315, 348, 446, 501, 716, 996, 1040
BstSFI CTRYAG 1 cut(s) 366
BstSLI GKGCMC 1 cut(s) 1104
BstV2I GAAGAC 2 cut(s) 844, 867
BstX2I RGATCY 3 cut(s) 24, 74, 455
BstYI RGATCY 3 cut(s) 24, 74, 455
BsuRI GGCC 5 cut(s) 56, 320, 816, 945, 1226
BtgI CCRYGG 2 cut(s) 57, 946
BtgZI GCGATG 1 cut(s) 900
BtrI CACGTC 1 cut(s) 874
BtsCI GGATG 4 cut(s) 182, 711, 910, 1030
BtsI GCAGTG 1 cut(s) 958
BtsIMutI CAGTG 1 cut(s) 958
BveI ACCTGC 2 cut(s) 26, 514
Cac8I GCNNGC 3 cut(s) 135, 162, 826
CaiI CAGNNNCTG 1 cut(s) 374
CfoI GCGC 2 cut(s) 39, 493
Cfr13I GGNCC 2 cut(s) 319, 1224
Csp6I GTAC 4 cut(s) 346, 735, 763, 1200
CspCI CAANNNNNGTGG 2 cut(s) 928, 963
CviAII CATG 4 cut(s) 58, 70, 274, 597
CviQI GTAC 4 cut(s) 346, 735, 763, 1200
DdeI CTNAG 3 cut(s) 153, 206, 1237
DinI GGCGCC 1 cut(s) 492
DpnI GATC 5 cut(s) 26, 76, 457, 796, 1287
DpnII GATC 5 cut(s) 24, 74, 455, 794, 1285
DraIII CACNNNGTG 1 cut(s) 1097
DrdI GACNNNNNNGTC 1 cut(s) 878
DseDI GACNNNNNNGTC 1 cut(s) 878
EaeI YGGCCR 2 cut(s) 814, 943
Eam1104I CTCTTC 5 cut(s) 678, 687, 922, 1234, 1305
EarI CTCTTC 5 cut(s) 678, 687, 922, 1234, 1305
EciI GGCGGA 3 cut(s) 78, 291, 372
Eco130I CCWWGG 1 cut(s) 57
Eco47III AGCGCT 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 362
EcoO109I RGGNCCY 1 cut(s) 1224
EcoRII CCWGG 4 cut(s) 501, 716, 996, 1040
EcoT14I CCWWGG 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 492
EheI GGCGCC 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 57
Esp3I CGTCTC 1 cut(s) 312
FaeI CATG 4 cut(s) 61, 73, 277, 600
FalI AAGNNNNNCTT 2 cut(s) 630, 662
FaqI GGGAC 2 cut(s) 605, 1169
FatI CATG 4 cut(s) 57, 69, 273, 596
FauI CCCGC 1 cut(s) 132
FokI GGATG 4 cut(s) 169, 698, 917, 1017
FspBI CTAG 3 cut(s) 623, 1143, 1221
GlaI GCGC 2 cut(s) 38, 492
GsaI CCCAGC 2 cut(s) 1190, 1301
GsuI CTGGAG 1 cut(s) 524
HaeII RGCGCY 2 cut(s) 40, 494
HaeIII GGCC 5 cut(s) 56, 320, 816, 945, 1226
HapII CCGG 7 cut(s) 173, 317, 329, 349, 448, 554, 841
HhaI GCGC 2 cut(s) 39, 493
Hin1I GRCGYC 2 cut(s) 491, 702
Hin1II CATG 4 cut(s) 61, 73, 277, 600
Hin6I GCGC 2 cut(s) 37, 491
HinP1I GCGC 2 cut(s) 37, 491
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 9 cut(s) 139, 193, 243, 398, 425, 641, 837, 893, 1079
HpaII CCGG 7 cut(s) 173, 317, 329, 349, 448, 554, 841
HphI GGTGA 4 cut(s) 487, 543, 644, 1291
Hpy188I TCNGA 7 cut(s) 242, 248, 342, 541, 794, 898, 1336
Hpy188III TCNNGA 1 cut(s) 647
Hpy99I CGWCG 6 cut(s) 391, 468, 471, 704, 707, 869
HpyAV CCTTC 3 cut(s) 153, 333, 1102
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 3 cut(s) 463, 702, 873
HpyCH4V TGCA 8 cut(s) 21, 30, 277, 292, 368, 780, 1114, 1256
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 36, 371, 374, 377, 1176
HpyF3I CTNAG 3 cut(s) 153, 206, 1237
HpySE526I ACGT 3 cut(s) 463, 702, 873
Hsp92I GRCGYC 2 cut(s) 491, 702
Hsp92II CATG 4 cut(s) 61, 73, 277, 600
HspAI GCGC 2 cut(s) 37, 491
KasI GGCGCC 1 cut(s) 490
Kzo9I GATC 5 cut(s) 24, 74, 455, 794, 1285
LmnI GCTCC 4 cut(s) 102, 385, 517, 1027
LweI GCATC 3 cut(s) 279, 570, 1039
MaeI CTAG 3 cut(s) 623, 1143, 1221
MaeII ACGT 3 cut(s) 463, 702, 873
MaeIII GTNAC 1 cut(s) 610
MalI GATC 5 cut(s) 26, 76, 457, 796, 1287
MbiI CCGCTC 1 cut(s) 97
MboI GATC 5 cut(s) 24, 74, 455, 794, 1285
MflI RGATCY 3 cut(s) 24, 74, 455
MhlI GDGCHC 2 cut(s) 568, 1104
MluCI AATT 2 cut(s) 1273, 1329
Mly113I GGCGCC 1 cut(s) 491
MlyI GAGTC 5 cut(s) 133, 187, 392, 434, 846
MroXI GAANNNNTTC 1 cut(s) 788
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 3 cut(s) 157, 371, 1190
MspI CCGG 7 cut(s) 173, 317, 329, 349, 448, 554, 841
MspR9I CCNGG 7 cut(s) 317, 350, 448, 503, 718, 998, 1042
Mva1269I GAATGC 1 cut(s) 1058
MvaI CCWGG 4 cut(s) 503, 718, 998, 1042
MwoI GCNNNNNNNGC 6 cut(s) 27, 36, 371, 374, 377, 1176
NarI GGCGCC 1 cut(s) 491
NciI CCSGG 3 cut(s) 317, 350, 448
NcoI CCATGG 1 cut(s) 57
NdeII GATC 5 cut(s) 24, 74, 455, 794, 1285
NlaIII CATG 4 cut(s) 61, 73, 277, 600
NlaIV GGNNCC 4 cut(s) 321, 381, 492, 845
NmeAIII GCCGAG 2 cut(s) 380, 789
NmuCI GTSAC 1 cut(s) 610
PaqCI CACCTGC 1 cut(s) 26
PasI CCCWGGG 1 cut(s) 1041
PcsI WCGNNNNNNNCGW 2 cut(s) 861, 870
PctI GAATGC 1 cut(s) 1058
PdmI GAANNNNTTC 1 cut(s) 788
PfeI GAWTC 4 cut(s) 243, 641, 893, 1079
PflFI GACNNNGTC 1 cut(s) 701
PleI GAGTC 5 cut(s) 133, 187, 392, 433, 845
PluTI GGCGCC 1 cut(s) 494
PpsI GAGTC 5 cut(s) 133, 187, 392, 433, 845
PsiI TTATAA 1 cut(s) 1152
Psp6I CCWGG 4 cut(s) 501, 716, 996, 1040
PspFI CCCAGC 2 cut(s) 1186, 1297
PspGI CCWGG 4 cut(s) 501, 716, 996, 1040
PspN4I GGNNCC 4 cut(s) 321, 381, 492, 845
PspPI GGNCC 2 cut(s) 319, 1224
PstI CTGCAG 1 cut(s) 370
PstNI CAGNNNCTG 1 cut(s) 374
PsuI RGATCY 3 cut(s) 24, 74, 455
PsyI GACNNNGTC 1 cut(s) 701
PvuII CAGCTG 2 cut(s) 371, 1190
RsaI GTAC 4 cut(s) 347, 736, 764, 1201
RsaNI GTAC 4 cut(s) 346, 735, 763, 1200
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 1 cut(s) 254
Sau3AI GATC 5 cut(s) 24, 74, 455, 794, 1285
Sau96I GGNCC 2 cut(s) 319, 1224
ScaI AGTACT 1 cut(s) 736
SchI GAGTC 5 cut(s) 133, 187, 392, 434, 846
ScrFI CCNGG 7 cut(s) 317, 350, 448, 503, 718, 998, 1042
SduI GDGCHC 2 cut(s) 568, 1104
SfaNI GCATC 3 cut(s) 279, 570, 1039
SfcI CTRYAG 1 cut(s) 366
SfoI GGCGCC 1 cut(s) 492
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 2 cut(s) 586, 647
SmoI CTYRAG 2 cut(s) 586, 647
SpeI ACTAGT 1 cut(s) 1142
Sse9I AATT 2 cut(s) 1273, 1329
SspDI GGCGCC 1 cut(s) 490
SspMI CTAG 3 cut(s) 623, 1143, 1221
StyD4I CCNGG 7 cut(s) 315, 348, 446, 501, 716, 996, 1040
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 3 cut(s) 466, 705, 876
TaqI TCGA 4 cut(s) 191, 855, 1317, 1325
TasI AATT 2 cut(s) 1273, 1329
TatI WGTACW 2 cut(s) 734, 762
TauI GCSGC 8 cut(s) 130, 133, 160, 380, 491, 496, 499, 816
TfiI GAWTC 4 cut(s) 243, 641, 893, 1079
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 1 cut(s) 958
TseFI GTSAC 1 cut(s) 610
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 5 cut(s) 171, 620, 633, 651, 700
TspGWI ACGGA 1 cut(s) 523
TspRI CASTG 1 cut(s) 958
Tth111I GACNNNGTC 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 1004
XmnI GAANNNNTTC 1 cut(s) 788
XspI CTAG 3 cut(s) 623, 1143, 1221
ZraI GACGTC 1 cut(s) 703
ZrmI AGTACT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.