ZINC FINGER protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g27290 |
| rosa_chinensis | RchiOBHm_Chr1g0374121 |
| rosa_laevigata | RLG00000026761 |
| rosa_multiflora | Rmu_sc0020614.1_g000003 Rmu_sc0026266.1_g000001 |
| rosa_rugosa | Rorug01G0380800 |
| rosa_samantha | Rh1AG391700 Rh1CG368700 Rh1DG386400 |
| rosa_wichuraiana | Rw1G034390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1152 |
| AarI | CACCTGC | 1 cut(s) | 26 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 878 |
| AatII | GACGTC | 1 cut(s) | 705 |
| Acc36I | ACCTGC | 2 cut(s) | 26, 514 |
| AccB1I | GGYRCC | 2 cut(s) | 490, 843 |
| AccBSI | CCGCTC | 1 cut(s) | 97 |
| AclWI | GGATC | 2 cut(s) | 450, 789 |
| AcoI | YGGCCR | 2 cut(s) | 814, 943 |
| AcuI | CTGAAG | 1 cut(s) | 362 |
| AcyI | GRCGYC | 2 cut(s) | 491, 702 |
| AdeI | CACNNNGTG | 1 cut(s) | 1097 |
| AfaI | GTAC | 4 cut(s) | 347, 736, 764, 1201 |
| AfeI | AGCGCT | 1 cut(s) | 38 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 328 |
| AgsI | TTSAA | 3 cut(s) | 43, 1052, 1069 |
| AhlI | ACTAGT | 1 cut(s) | 1142 |
| AjiI | CACGTC | 1 cut(s) | 874 |
| AjnI | CCWGG | 4 cut(s) | 501, 716, 996, 1040 |
| AluBI | AGCT | 5 cut(s) | 91, 371, 626, 1072, 1190 |
| AluI | AGCT | 5 cut(s) | 91, 371, 626, 1072, 1190 |
| Alw21I | GWGCWC | 1 cut(s) | 568 |
| Alw26I | GTCTC | 1 cut(s) | 312 |
| AlwI | GGATC | 2 cut(s) | 450, 789 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 374 |
| Aor51HI | AGCGCT | 1 cut(s) | 38 |
| AoxI | GGCC | 5 cut(s) | 54, 318, 814, 943, 1224 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 788 |
| AspLEI | GCGC | 2 cut(s) | 39, 493 |
| AspS9I | GGNCC | 2 cut(s) | 319, 1224 |
| AsuC2I | CCSGG | 3 cut(s) | 317, 350, 448 |
| AsuHPI | GGTGA | 4 cut(s) | 487, 543, 644, 1291 |
| BaeGI | GKGCMC | 1 cut(s) | 1104 |
| BanI | GGYRCC | 2 cut(s) | 490, 843 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1100, 1132 |
| BbsI | GAAGAC | 2 cut(s) | 844, 867 |
| Bbv12I | GWGCWC | 1 cut(s) | 568 |
| BbvCI | CCTCAGC | 2 cut(s) | 153, 1237 |
| BccI | CCATC | 1 cut(s) | 667 |
| BceAI | ACGGC | 3 cut(s) | 289, 370, 930 |
| BciT130I | CCWGG | 4 cut(s) | 503, 718, 998, 1042 |
| BcnI | CCSGG | 3 cut(s) | 317, 350, 448 |
| BcoDI | GTCTC | 1 cut(s) | 312 |
| BcuI | ACTAGT | 1 cut(s) | 1142 |
| BfaI | CTAG | 3 cut(s) | 623, 1143, 1221 |
| BfmI | CTRYAG | 1 cut(s) | 366 |
| BfoI | RGCGCY | 2 cut(s) | 40, 494 |
| BfuAI | ACCTGC | 2 cut(s) | 26, 514 |
| BglII | AGATCT | 2 cut(s) | 24, 74 |
| BmcAI | AGTACT | 1 cut(s) | 736 |
| Bme1390I | CCNGG | 7 cut(s) | 317, 350, 448, 503, 718, 998, 1042 |
| BmgBI | CACGTC | 1 cut(s) | 874 |
| BmgT120I | GGNCC | 2 cut(s) | 319, 1224 |
| BmiI | GGNNCC | 4 cut(s) | 321, 381, 492, 845 |
| BmrFI | CCNGG | 7 cut(s) | 317, 350, 448, 503, 718, 998, 1042 |
| BmsI | GCATC | 3 cut(s) | 279, 570, 1039 |
| BpiI | GAAGAC | 2 cut(s) | 844, 867 |
| BpmI | CTGGAG | 1 cut(s) | 524 |
| Bpu10I | CCTNAGC | 3 cut(s) | 153, 206, 1237 |
| BpuEI | CTTGAG | 2 cut(s) | 571, 668 |
| BpuMI | CCSGG | 3 cut(s) | 317, 350, 448 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1290 |
| BsaHI | GRCGYC | 2 cut(s) | 491, 702 |
| BsaJI | CCNNGG | 9 cut(s) | 57, 315, 501, 716, 897, 946, 997, 1040, 1041 |
| BsaWI | WCCGGW | 1 cut(s) | 553 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 130, 160 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 328 |
| Bse3DI | GCAATG | 2 cut(s) | 946, 1186 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1290 |
| BseBI | CCWGG | 4 cut(s) | 503, 718, 998, 1042 |
| BseDI | CCNNGG | 9 cut(s) | 57, 315, 501, 716, 897, 946, 997, 1040, 1041 |
| BseGI | GGATG | 4 cut(s) | 182, 711, 910, 1030 |
| BseJI | GATNNNNATC | 1 cut(s) | 1290 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BseMI | GCAATG | 2 cut(s) | 946, 1186 |
| BseMII | CTCAG | 2 cut(s) | 167, 1251 |
| BseSI | GKGCMC | 1 cut(s) | 1104 |
| BseYI | CCCAGC | 2 cut(s) | 1186, 1297 |
| BshFI | GGCC | 5 cut(s) | 56, 320, 816, 945, 1226 |
| BshNI | GGYRCC | 2 cut(s) | 490, 843 |
| BsiHKAI | GWGCWC | 1 cut(s) | 568 |
| BsiSI | CCGG | 7 cut(s) | 173, 317, 329, 349, 448, 554, 841 |
| BslFI | GGGAC | 2 cut(s) | 605, 1169 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BsmAI | GTCTC | 1 cut(s) | 312 |
| BsmBI | CGTCTC | 1 cut(s) | 312 |
| BsmFI | GGGAC | 2 cut(s) | 605, 1169 |
| BsmI | GAATGC | 1 cut(s) | 1058 |
| BsnI | GGCC | 5 cut(s) | 56, 320, 816, 945, 1226 |
| Bsp1286I | GDGCHC | 2 cut(s) | 568, 1104 |
| Bsp143I | GATC | 5 cut(s) | 24, 74, 455, 794, 1285 |
| Bsp19I | CCATGG | 1 cut(s) | 57 |
| BspANI | GGCC | 5 cut(s) | 56, 320, 816, 945, 1226 |
| BspCNI | CTCAG | 2 cut(s) | 166, 1250 |
| BspLI | GGNNCC | 4 cut(s) | 321, 381, 492, 845 |
| BspMAI | CTGCAG | 1 cut(s) | 370 |
| BspMI | ACCTGC | 2 cut(s) | 26, 514 |
| BspPI | GGATC | 2 cut(s) | 450, 789 |
| BspT107I | GGYRCC | 2 cut(s) | 490, 843 |
| BsrBI | CCGCTC | 1 cut(s) | 97 |
| BsrDI | GCAATG | 2 cut(s) | 946, 1186 |
| BssECI | CCNNGG | 9 cut(s) | 57, 315, 501, 716, 897, 946, 997, 1040, 1041 |
| BssMI | GATC | 5 cut(s) | 24, 74, 455, 794, 1285 |
| BssNI | GRCGYC | 2 cut(s) | 491, 702 |
| BssT1I | CCWWGG | 1 cut(s) | 57 |
| Bst2UI | CCWGG | 4 cut(s) | 503, 718, 998, 1042 |
| Bst4CI | ACNGT | 1 cut(s) | 260 |
| Bst6I | CTCTTC | 5 cut(s) | 678, 687, 922, 1234, 1305 |
| BstACI | GRCGYC | 2 cut(s) | 491, 702 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 27, 374 |
| BstC8I | GCNNGC | 3 cut(s) | 135, 162, 826 |
| BstDEI | CTNAG | 3 cut(s) | 153, 206, 1237 |
| BstDSI | CCRYGG | 2 cut(s) | 57, 946 |
| BstF5I | GGATG | 4 cut(s) | 182, 711, 910, 1030 |
| BstH2I | RGCGCY | 2 cut(s) | 40, 494 |
| BstHHI | GCGC | 2 cut(s) | 39, 493 |
| BstKTI | GATC | 5 cut(s) | 27, 77, 458, 797, 1288 |
| BstMAI | GTCTC | 1 cut(s) | 312 |
| BstMBI | GATC | 5 cut(s) | 24, 74, 455, 794, 1285 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 27, 36, 371, 374, 377, 1176 |
| BstNI | CCWGG | 4 cut(s) | 503, 718, 998, 1042 |
| BstSCI | CCNGG | 7 cut(s) | 315, 348, 446, 501, 716, 996, 1040 |
| BstSFI | CTRYAG | 1 cut(s) | 366 |
| BstSLI | GKGCMC | 1 cut(s) | 1104 |
| BstV2I | GAAGAC | 2 cut(s) | 844, 867 |
| BstX2I | RGATCY | 3 cut(s) | 24, 74, 455 |
| BstYI | RGATCY | 3 cut(s) | 24, 74, 455 |
| BsuRI | GGCC | 5 cut(s) | 56, 320, 816, 945, 1226 |
| BtgI | CCRYGG | 2 cut(s) | 57, 946 |
| BtgZI | GCGATG | 1 cut(s) | 900 |
| BtrI | CACGTC | 1 cut(s) | 874 |
| BtsCI | GGATG | 4 cut(s) | 182, 711, 910, 1030 |
| BtsI | GCAGTG | 1 cut(s) | 958 |
| BtsIMutI | CAGTG | 1 cut(s) | 958 |
| BveI | ACCTGC | 2 cut(s) | 26, 514 |
| Cac8I | GCNNGC | 3 cut(s) | 135, 162, 826 |
| CaiI | CAGNNNCTG | 1 cut(s) | 374 |
| CfoI | GCGC | 2 cut(s) | 39, 493 |
| Cfr13I | GGNCC | 2 cut(s) | 319, 1224 |
| Csp6I | GTAC | 4 cut(s) | 346, 735, 763, 1200 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 928, 963 |
| CviAII | CATG | 4 cut(s) | 58, 70, 274, 597 |
| CviQI | GTAC | 4 cut(s) | 346, 735, 763, 1200 |
| DdeI | CTNAG | 3 cut(s) | 153, 206, 1237 |
| DinI | GGCGCC | 1 cut(s) | 492 |
| DpnI | GATC | 5 cut(s) | 26, 76, 457, 796, 1287 |
| DpnII | GATC | 5 cut(s) | 24, 74, 455, 794, 1285 |
| DraIII | CACNNNGTG | 1 cut(s) | 1097 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 878 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 878 |
| EaeI | YGGCCR | 2 cut(s) | 814, 943 |
| Eam1104I | CTCTTC | 5 cut(s) | 678, 687, 922, 1234, 1305 |
| EarI | CTCTTC | 5 cut(s) | 678, 687, 922, 1234, 1305 |
| EciI | GGCGGA | 3 cut(s) | 78, 291, 372 |
| Eco130I | CCWWGG | 1 cut(s) | 57 |
| Eco47III | AGCGCT | 1 cut(s) | 38 |
| Eco57I | CTGAAG | 1 cut(s) | 362 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1224 |
| EcoRII | CCWGG | 4 cut(s) | 501, 716, 996, 1040 |
| EcoT14I | CCWWGG | 1 cut(s) | 57 |
| EgeI | GGCGCC | 1 cut(s) | 492 |
| EheI | GGCGCC | 1 cut(s) | 492 |
| ErhI | CCWWGG | 1 cut(s) | 57 |
| Esp3I | CGTCTC | 1 cut(s) | 312 |
| FaeI | CATG | 4 cut(s) | 61, 73, 277, 600 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 630, 662 |
| FaqI | GGGAC | 2 cut(s) | 605, 1169 |
| FatI | CATG | 4 cut(s) | 57, 69, 273, 596 |
| FauI | CCCGC | 1 cut(s) | 132 |
| FokI | GGATG | 4 cut(s) | 169, 698, 917, 1017 |
| FspBI | CTAG | 3 cut(s) | 623, 1143, 1221 |
| GlaI | GCGC | 2 cut(s) | 38, 492 |
| GsaI | CCCAGC | 2 cut(s) | 1190, 1301 |
| GsuI | CTGGAG | 1 cut(s) | 524 |
| HaeII | RGCGCY | 2 cut(s) | 40, 494 |
| HaeIII | GGCC | 5 cut(s) | 56, 320, 816, 945, 1226 |
| HapII | CCGG | 7 cut(s) | 173, 317, 329, 349, 448, 554, 841 |
| HhaI | GCGC | 2 cut(s) | 39, 493 |
| Hin1I | GRCGYC | 2 cut(s) | 491, 702 |
| Hin1II | CATG | 4 cut(s) | 61, 73, 277, 600 |
| Hin6I | GCGC | 2 cut(s) | 37, 491 |
| HinP1I | GCGC | 2 cut(s) | 37, 491 |
| HindIII | AAGCTT | 1 cut(s) | 89 |
| HinfI | GANTC | 9 cut(s) | 139, 193, 243, 398, 425, 641, 837, 893, 1079 |
| HpaII | CCGG | 7 cut(s) | 173, 317, 329, 349, 448, 554, 841 |
| HphI | GGTGA | 4 cut(s) | 487, 543, 644, 1291 |
| Hpy188I | TCNGA | 7 cut(s) | 242, 248, 342, 541, 794, 898, 1336 |
| Hpy188III | TCNNGA | 1 cut(s) | 647 |
| Hpy99I | CGWCG | 6 cut(s) | 391, 468, 471, 704, 707, 869 |
| HpyAV | CCTTC | 3 cut(s) | 153, 333, 1102 |
| HpyCH4III | ACNGT | 1 cut(s) | 260 |
| HpyCH4IV | ACGT | 3 cut(s) | 463, 702, 873 |
| HpyCH4V | TGCA | 8 cut(s) | 21, 30, 277, 292, 368, 780, 1114, 1256 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 27, 36, 371, 374, 377, 1176 |
| HpyF3I | CTNAG | 3 cut(s) | 153, 206, 1237 |
| HpySE526I | ACGT | 3 cut(s) | 463, 702, 873 |
| Hsp92I | GRCGYC | 2 cut(s) | 491, 702 |
| Hsp92II | CATG | 4 cut(s) | 61, 73, 277, 600 |
| HspAI | GCGC | 2 cut(s) | 37, 491 |
| KasI | GGCGCC | 1 cut(s) | 490 |
| Kzo9I | GATC | 5 cut(s) | 24, 74, 455, 794, 1285 |
| LmnI | GCTCC | 4 cut(s) | 102, 385, 517, 1027 |
| LweI | GCATC | 3 cut(s) | 279, 570, 1039 |
| MaeI | CTAG | 3 cut(s) | 623, 1143, 1221 |
| MaeII | ACGT | 3 cut(s) | 463, 702, 873 |
| MaeIII | GTNAC | 1 cut(s) | 610 |
| MalI | GATC | 5 cut(s) | 26, 76, 457, 796, 1287 |
| MbiI | CCGCTC | 1 cut(s) | 97 |
| MboI | GATC | 5 cut(s) | 24, 74, 455, 794, 1285 |
| MflI | RGATCY | 3 cut(s) | 24, 74, 455 |
| MhlI | GDGCHC | 2 cut(s) | 568, 1104 |
| MluCI | AATT | 2 cut(s) | 1273, 1329 |
| Mly113I | GGCGCC | 1 cut(s) | 491 |
| MlyI | GAGTC | 5 cut(s) | 133, 187, 392, 434, 846 |
| MroXI | GAANNNNTTC | 1 cut(s) | 788 |
| MseI | TTAA | 1 cut(s) | 254 |
| MslI | CAYNNNNRTG | 1 cut(s) | 278 |
| MspA1I | CMGCKG | 3 cut(s) | 157, 371, 1190 |
| MspI | CCGG | 7 cut(s) | 173, 317, 329, 349, 448, 554, 841 |
| MspR9I | CCNGG | 7 cut(s) | 317, 350, 448, 503, 718, 998, 1042 |
| Mva1269I | GAATGC | 1 cut(s) | 1058 |
| MvaI | CCWGG | 4 cut(s) | 503, 718, 998, 1042 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 27, 36, 371, 374, 377, 1176 |
| NarI | GGCGCC | 1 cut(s) | 491 |
| NciI | CCSGG | 3 cut(s) | 317, 350, 448 |
| NcoI | CCATGG | 1 cut(s) | 57 |
| NdeII | GATC | 5 cut(s) | 24, 74, 455, 794, 1285 |
| NlaIII | CATG | 4 cut(s) | 61, 73, 277, 600 |
| NlaIV | GGNNCC | 4 cut(s) | 321, 381, 492, 845 |
| NmeAIII | GCCGAG | 2 cut(s) | 380, 789 |
| NmuCI | GTSAC | 1 cut(s) | 610 |
| PaqCI | CACCTGC | 1 cut(s) | 26 |
| PasI | CCCWGGG | 1 cut(s) | 1041 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 861, 870 |
| PctI | GAATGC | 1 cut(s) | 1058 |
| PdmI | GAANNNNTTC | 1 cut(s) | 788 |
| PfeI | GAWTC | 4 cut(s) | 243, 641, 893, 1079 |
| PflFI | GACNNNGTC | 1 cut(s) | 701 |
| PleI | GAGTC | 5 cut(s) | 133, 187, 392, 433, 845 |
| PluTI | GGCGCC | 1 cut(s) | 494 |
| PpsI | GAGTC | 5 cut(s) | 133, 187, 392, 433, 845 |
| PsiI | TTATAA | 1 cut(s) | 1152 |
| Psp6I | CCWGG | 4 cut(s) | 501, 716, 996, 1040 |
| PspFI | CCCAGC | 2 cut(s) | 1186, 1297 |
| PspGI | CCWGG | 4 cut(s) | 501, 716, 996, 1040 |
| PspN4I | GGNNCC | 4 cut(s) | 321, 381, 492, 845 |
| PspPI | GGNCC | 2 cut(s) | 319, 1224 |
| PstI | CTGCAG | 1 cut(s) | 370 |
| PstNI | CAGNNNCTG | 1 cut(s) | 374 |
| PsuI | RGATCY | 3 cut(s) | 24, 74, 455 |
| PsyI | GACNNNGTC | 1 cut(s) | 701 |
| PvuII | CAGCTG | 2 cut(s) | 371, 1190 |
| RsaI | GTAC | 4 cut(s) | 347, 736, 764, 1201 |
| RsaNI | GTAC | 4 cut(s) | 346, 735, 763, 1200 |
| RseI | CAYNNNNRTG | 1 cut(s) | 278 |
| SaqAI | TTAA | 1 cut(s) | 254 |
| Sau3AI | GATC | 5 cut(s) | 24, 74, 455, 794, 1285 |
| Sau96I | GGNCC | 2 cut(s) | 319, 1224 |
| ScaI | AGTACT | 1 cut(s) | 736 |
| SchI | GAGTC | 5 cut(s) | 133, 187, 392, 434, 846 |
| ScrFI | CCNGG | 7 cut(s) | 317, 350, 448, 503, 718, 998, 1042 |
| SduI | GDGCHC | 2 cut(s) | 568, 1104 |
| SfaNI | GCATC | 3 cut(s) | 279, 570, 1039 |
| SfcI | CTRYAG | 1 cut(s) | 366 |
| SfoI | GGCGCC | 1 cut(s) | 492 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 278 |
| SmlI | CTYRAG | 2 cut(s) | 586, 647 |
| SmoI | CTYRAG | 2 cut(s) | 586, 647 |
| SpeI | ACTAGT | 1 cut(s) | 1142 |
| Sse9I | AATT | 2 cut(s) | 1273, 1329 |
| SspDI | GGCGCC | 1 cut(s) | 490 |
| SspMI | CTAG | 3 cut(s) | 623, 1143, 1221 |
| StyD4I | CCNGG | 7 cut(s) | 315, 348, 446, 501, 716, 996, 1040 |
| StyI | CCWWGG | 1 cut(s) | 57 |
| TaaI | ACNGT | 1 cut(s) | 260 |
| TaiI | ACGT | 3 cut(s) | 466, 705, 876 |
| TaqI | TCGA | 4 cut(s) | 191, 855, 1317, 1325 |
| TasI | AATT | 2 cut(s) | 1273, 1329 |
| TatI | WGTACW | 2 cut(s) | 734, 762 |
| TauI | GCSGC | 8 cut(s) | 130, 133, 160, 380, 491, 496, 499, 816 |
| TfiI | GAWTC | 4 cut(s) | 243, 641, 893, 1079 |
| Tru1I | TTAA | 1 cut(s) | 254 |
| Tru9I | TTAA | 1 cut(s) | 254 |
| TscAI | CASTG | 1 cut(s) | 958 |
| TseFI | GTSAC | 1 cut(s) | 610 |
| Tsp45I | GTSAC | 1 cut(s) | 610 |
| TspDTI | ATGAA | 5 cut(s) | 171, 620, 633, 651, 700 |
| TspGWI | ACGGA | 1 cut(s) | 523 |
| TspRI | CASTG | 1 cut(s) | 958 |
| Tth111I | GACNNNGTC | 1 cut(s) | 701 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1004 |
| XmnI | GAANNNNTTC | 1 cut(s) | 788 |
| XspI | CTAG | 3 cut(s) | 623, 1143, 1221 |
| ZraI | GACGTC | 1 cut(s) | 703 |
| ZrmI | AGTACT | 1 cut(s) | 736 |