Pectinesterase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G47400 AT5G51490 AT5G51500 |
| fragaria_vesca | FvH4_7g27770 |
| malus_domestica | MD11G1195100.v1.1 MD11G1195400.v1.1 |
| prunus_persica | Prupe.2G278300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0374561 |
| rosa_laevigata | RLG00000026728 |
| rosa_roxburghii | Rroxscaffold_4G00283400 |
| rosa_samantha | Rh1AG394900 Rh1BG359600 Rh1CG372700 Rh1DG390200 |
| rosa_wichuraiana | Rw1G035020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 900 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 332 |
| Acc36I | ACCTGC | 1 cut(s) | 1379 |
| AccB1I | GGYRCC | 2 cut(s) | 133, 1109 |
| AccI | GTMKAC | 2 cut(s) | 851, 1472 |
| AccII | CGCG | 3 cut(s) | 943, 945, 1342 |
| AccIII | TCCGGA | 1 cut(s) | 198 |
| AclWI | GGATC | 3 cut(s) | 450, 463, 996 |
| AcoI | YGGCCR | 3 cut(s) | 3, 729, 1322 |
| AcsI | RAATTY | 1 cut(s) | 1453 |
| AdeI | CACNNNGTG | 1 cut(s) | 133 |
| AfaI | GTAC | 1 cut(s) | 1448 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 130, 198, 676, 1184, 1482 |
| AflII | CTTAAG | 1 cut(s) | 1283 |
| AflIII | ACRYGT | 2 cut(s) | 471, 498 |
| AgsI | TTSAA | 4 cut(s) | 104, 316, 1232, 1248 |
| AhlI | ACTAGT | 1 cut(s) | 1514 |
| AjiI | CACGTC | 1 cut(s) | 1599 |
| AjnI | CCWGG | 3 cut(s) | 711, 928, 1495 |
| AluBI | AGCT | 7 cut(s) | 319, 343, 523, 650, 843, 1008, 1208 |
| AluI | AGCT | 7 cut(s) | 319, 343, 523, 650, 843, 1008, 1208 |
| Alw26I | GTCTC | 4 cut(s) | 159, 260, 444, 1072 |
| AlwI | GGATC | 3 cut(s) | 450, 463, 996 |
| Ama87I | CYCGRG | 1 cut(s) | 224 |
| Aor13HI | TCCGGA | 1 cut(s) | 198 |
| AoxI | GGCC | 8 cut(s) | 3, 361, 729, 926, 1318, 1322, 1493, 1603 |
| ApeKI | GCWGC | 5 cut(s) | 296, 647, 1136, 1271, 1573 |
| ApoI | RAATTY | 1 cut(s) | 1453 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 674, 706, 1109, 1141 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 320, 580 |
| AspLEI | GCGC | 5 cut(s) | 422, 943, 945, 1037, 1276 |
| AspS9I | GGNCC | 6 cut(s) | 705, 926, 1066, 1279, 1410, 1460 |
| AsuC2I | CCSGG | 3 cut(s) | 131, 1268, 1385 |
| AsuHPI | GGTGA | 4 cut(s) | 119, 166, 848, 1531 |
| AvaI | CYCGRG | 1 cut(s) | 224 |
| AvaII | GGWCC | 5 cut(s) | 705, 1066, 1279, 1410, 1460 |
| BaeGI | GKGCMC | 1 cut(s) | 699 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 1 cut(s) | 455 |
| BanI | GGYRCC | 2 cut(s) | 133, 1109 |
| BanII | GRGCYC | 1 cut(s) | 235 |
| BauI | CACGAG | 1 cut(s) | 671 |
| BbsI | GAAGAC | 1 cut(s) | 1342 |
| BbvI | GCAGC | 5 cut(s) | 283, 659, 1123, 1258, 1560 |
| BccI | CCATC | 2 cut(s) | 202, 680 |
| BceAI | ACGGC | 3 cut(s) | 1123, 1254, 1309 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 636, 670 |
| BciT130I | CCWGG | 3 cut(s) | 713, 930, 1497 |
| BclI | TGATCA | 1 cut(s) | 1377 |
| BcnI | CCSGG | 3 cut(s) | 131, 1268, 1385 |
| BcoDI | GTCTC | 4 cut(s) | 159, 260, 444, 1072 |
| BcuI | ACTAGT | 1 cut(s) | 1514 |
| BfaI | CTAG | 4 cut(s) | 365, 587, 753, 1515 |
| BfmI | CTRYAG | 1 cut(s) | 1087 |
| BfoI | RGCGCY | 1 cut(s) | 423 |
| BfrI | CTTAAG | 1 cut(s) | 1283 |
| BfuAI | ACCTGC | 1 cut(s) | 1379 |
| BlpI | GCTNAGC | 1 cut(s) | 416 |
| Bme1390I | CCNGG | 6 cut(s) | 131, 713, 930, 1268, 1385, 1497 |
| Bme18I | GGWCC | 5 cut(s) | 705, 1066, 1279, 1410, 1460 |
| BmeT110I | CYCGRG | 1 cut(s) | 224 |
| BmgBI | CACGTC | 1 cut(s) | 1599 |
| BmgT120I | GGNCC | 6 cut(s) | 705, 926, 1066, 1279, 1410, 1460 |
| BmiI | GGNNCC | 3 cut(s) | 135, 457, 1111 |
| BmrFI | CCNGG | 6 cut(s) | 131, 713, 930, 1268, 1385, 1497 |
| BmrI | ACTGGG | 1 cut(s) | 606 |
| BmsI | GCATC | 3 cut(s) | 192, 957, 1320 |
| BmuI | ACTGGG | 1 cut(s) | 606 |
| BpiI | GAAGAC | 1 cut(s) | 1342 |
| BpmI | CTGGAG | 1 cut(s) | 581 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 416 |
| BpuEI | CTTGAG | 3 cut(s) | 865, 1194, 1245 |
| BpuMI | CCSGG | 3 cut(s) | 131, 1268, 1385 |
| BsaJI | CCNNGG | 2 cut(s) | 459, 1325 |
| BsaWI | WCCGGW | 1 cut(s) | 198 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 130, 198, 676, 1184, 1482 |
| Bse118I | RCCGGY | 2 cut(s) | 1320, 1559 |
| Bse1I | ACTGG | 4 cut(s) | 152, 612, 1289, 1584 |
| Bse3DI | GCAATG | 1 cut(s) | 936 |
| BseAI | TCCGGA | 1 cut(s) | 198 |
| BseBI | CCWGG | 3 cut(s) | 713, 930, 1497 |
| BseDI | CCNNGG | 2 cut(s) | 459, 1325 |
| BseGI | GGATG | 4 cut(s) | 44, 207, 762, 1335 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 130, 198, 676, 1184, 1482 |
| BseMI | GCAATG | 1 cut(s) | 936 |
| BseMII | CTCAG | 3 cut(s) | 250, 430, 1088 |
| BseNI | ACTGG | 4 cut(s) | 152, 612, 1289, 1584 |
| BsePI | GCGCGC | 1 cut(s) | 941 |
| BseSI | GKGCMC | 1 cut(s) | 699 |
| BseX3I | CGGCCG | 1 cut(s) | 1322 |
| BseXI | GCAGC | 5 cut(s) | 283, 659, 1123, 1258, 1560 |
| BsgI | GTGCAG | 1 cut(s) | 373 |
| Bsh1236I | CGCG | 3 cut(s) | 943, 945, 1342 |
| Bsh1285I | CGRYCG | 3 cut(s) | 1325, 1564, 1568 |
| BshFI | GGCC | 8 cut(s) | 5, 363, 731, 928, 1320, 1324, 1495, 1605 |
| BshNI | GGYRCC | 2 cut(s) | 133, 1109 |
| BsiEI | CGRYCG | 3 cut(s) | 1325, 1564, 1568 |
| BsiHKCI | CYCGRG | 1 cut(s) | 224 |
| BsiSI | CCGG | 8 cut(s) | 131, 199, 969, 1267, 1277, 1321, 1385, 1560 |
| BslFI | GGGAC | 1 cut(s) | 1200 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 130, 198, 676, 1184, 1482 |
| BsmAI | GTCTC | 4 cut(s) | 159, 260, 444, 1072 |
| BsmBI | CGTCTC | 2 cut(s) | 260, 444 |
| BsmFI | GGGAC | 1 cut(s) | 1200 |
| BsnI | GGCC | 8 cut(s) | 5, 363, 731, 928, 1320, 1324, 1495, 1605 |
| BsoBI | CYCGRG | 1 cut(s) | 224 |
| Bsp1286I | GDGCHC | 2 cut(s) | 235, 699 |
| Bsp13I | TCCGGA | 1 cut(s) | 198 |
| Bsp143I | GATC | 6 cut(s) | 455, 657, 1001, 1012, 1377, 1565 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 416 |
| BspANI | GGCC | 8 cut(s) | 5, 363, 731, 928, 1320, 1324, 1495, 1605 |
| BspCNI | CTCAG | 3 cut(s) | 249, 429, 1087 |
| BspEI | TCCGGA | 1 cut(s) | 198 |
| BspFNI | CGCG | 3 cut(s) | 943, 945, 1342 |
| BspHI | TCATGA | 1 cut(s) | 1353 |
| BspLI | GGNNCC | 3 cut(s) | 135, 457, 1111 |
| BspMI | ACCTGC | 1 cut(s) | 1379 |
| BspPI | GGATC | 3 cut(s) | 450, 463, 996 |
| BspT107I | GGYRCC | 2 cut(s) | 133, 1109 |
| BspTI | CTTAAG | 1 cut(s) | 1283 |
| BsrDI | GCAATG | 1 cut(s) | 936 |
| BsrFI | RCCGGY | 2 cut(s) | 1320, 1559 |
| BsrI | ACTGG | 4 cut(s) | 152, 612, 1289, 1584 |
| BssAI | RCCGGY | 2 cut(s) | 1320, 1559 |
| BssECI | CCNNGG | 2 cut(s) | 459, 1325 |
| BssHII | GCGCGC | 1 cut(s) | 941 |
| BssMI | GATC | 6 cut(s) | 455, 657, 1001, 1012, 1377, 1565 |
| BssNAI | GTATAC | 1 cut(s) | 852 |
| BssSI | CACGAG | 1 cut(s) | 671 |
| BssT1I | CCWWGG | 1 cut(s) | 459 |
| Bst1107I | GTATAC | 1 cut(s) | 852 |
| Bst2BI | CACGAG | 1 cut(s) | 671 |
| Bst2UI | CCWGG | 3 cut(s) | 713, 930, 1497 |
| Bst4CI | ACNGT | 6 cut(s) | 86, 334, 536, 709, 1031, 1543 |
| BstAFI | CTTAAG | 1 cut(s) | 1283 |
| BstC8I | GCNNGC | 4 cut(s) | 284, 916, 943, 1322 |
| BstDEI | CTNAG | 5 cut(s) | 236, 416, 1074, 1315, 1424 |
| BstDSI | CCRYGG | 1 cut(s) | 1325 |
| BstF5I | GGATG | 4 cut(s) | 44, 207, 762, 1335 |
| BstFNI | CGCG | 3 cut(s) | 943, 945, 1342 |
| BstH2I | RGCGCY | 1 cut(s) | 423 |
| BstHHI | GCGC | 5 cut(s) | 422, 943, 945, 1037, 1276 |
| BstKTI | GATC | 6 cut(s) | 458, 660, 1004, 1015, 1380, 1568 |
| BstMAI | GTCTC | 4 cut(s) | 159, 260, 444, 1072 |
| BstMBI | GATC | 6 cut(s) | 455, 657, 1001, 1012, 1377, 1565 |
| BstMCI | CGRYCG | 3 cut(s) | 1325, 1564, 1568 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 239, 1330, 1339, 1402, 1526 |
| BstNI | CCWGG | 3 cut(s) | 713, 930, 1497 |
| BstNSI | RCATGY | 1 cut(s) | 502 |
| BstSCI | CCNGG | 6 cut(s) | 129, 711, 928, 1266, 1383, 1495 |
| BstSFI | CTRYAG | 1 cut(s) | 1087 |
| BstSLI | GKGCMC | 1 cut(s) | 699 |
| BstUI | CGCG | 3 cut(s) | 943, 945, 1342 |
| BstV1I | GCAGC | 5 cut(s) | 283, 659, 1123, 1258, 1560 |
| BstV2I | GAAGAC | 1 cut(s) | 1342 |
| BstX2I | RGATCY | 1 cut(s) | 455 |
| BstYI | RGATCY | 1 cut(s) | 455 |
| BstZ17I | GTATAC | 1 cut(s) | 852 |
| BstZI | CGGCCG | 1 cut(s) | 1322 |
| BsuRI | GGCC | 8 cut(s) | 5, 363, 731, 928, 1320, 1324, 1495, 1605 |
| BtgI | CCRYGG | 1 cut(s) | 1325 |
| BtrI | CACGTC | 1 cut(s) | 1599 |
| BtsCI | GGATG | 4 cut(s) | 44, 207, 762, 1335 |
| BtsIMutI | CAGTG | 3 cut(s) | 244, 1296, 1591 |
| BveI | ACCTGC | 1 cut(s) | 1379 |
| Cac8I | GCNNGC | 4 cut(s) | 284, 916, 943, 1322 |
| CciI | TCATGA | 1 cut(s) | 1353 |
| CfoI | GCGC | 5 cut(s) | 422, 943, 945, 1037, 1276 |
| Cfr10I | RCCGGY | 2 cut(s) | 1320, 1559 |
| Cfr13I | GGNCC | 6 cut(s) | 705, 926, 1066, 1279, 1410, 1460 |
| CpoI | CGGWCCG | 1 cut(s) | 705 |
| CseI | GACGC | 1 cut(s) | 410 |
| Csp6I | GTAC | 1 cut(s) | 1447 |
| CspI | CGGWCCG | 1 cut(s) | 705 |
| CviQI | GTAC | 1 cut(s) | 1447 |
| DdeI | CTNAG | 5 cut(s) | 236, 416, 1074, 1315, 1424 |
| DpnI | GATC | 6 cut(s) | 457, 659, 1003, 1014, 1379, 1567 |
| DpnII | GATC | 6 cut(s) | 455, 657, 1001, 1012, 1377, 1565 |
| DraIII | CACNNNGTG | 1 cut(s) | 133 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 332 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 332 |
| EaeI | YGGCCR | 3 cut(s) | 3, 729, 1322 |
| EagI | CGGCCG | 1 cut(s) | 1322 |
| EclXI | CGGCCG | 1 cut(s) | 1322 |
| Eco130I | CCWWGG | 1 cut(s) | 459 |
| Eco147I | AGGCCT | 2 cut(s) | 363, 1605 |
| Eco24I | GRGCYC | 1 cut(s) | 235 |
| Eco47I | GGWCC | 5 cut(s) | 705, 1066, 1279, 1410, 1460 |
| Eco52I | CGGCCG | 1 cut(s) | 1322 |
| Eco88I | CYCGRG | 1 cut(s) | 224 |
| EcoRII | CCWGG | 3 cut(s) | 711, 928, 1495 |
| EcoT14I | CCWWGG | 1 cut(s) | 459 |
| EcoT38I | GRGCYC | 1 cut(s) | 235 |
| ErhI | CCWWGG | 1 cut(s) | 459 |
| Esp3I | CGTCTC | 2 cut(s) | 260, 444 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1298, 1330 |
| FaqI | GGGAC | 1 cut(s) | 1200 |
| FauI | CCCGC | 1 cut(s) | 1335 |
| FbaI | TGATCA | 1 cut(s) | 1377 |
| FblI | GTMKAC | 2 cut(s) | 851, 1472 |
| FokI | GGATG | 4 cut(s) | 31, 214, 749, 1342 |
| FriOI | GRGCYC | 1 cut(s) | 235 |
| FseI | GGCCGGCC | 1 cut(s) | 1324 |
| FspBI | CTAG | 4 cut(s) | 365, 587, 753, 1515 |
| GlaI | GCGC | 5 cut(s) | 421, 942, 944, 1036, 1275 |
| GsuI | CTGGAG | 1 cut(s) | 581 |
| HaeII | RGCGCY | 1 cut(s) | 423 |
| HaeIII | GGCC | 8 cut(s) | 5, 363, 731, 928, 1320, 1324, 1495, 1605 |
| HapII | CCGG | 8 cut(s) | 131, 199, 969, 1267, 1277, 1321, 1385, 1560 |
| HgaI | GACGC | 1 cut(s) | 410 |
| HhaI | GCGC | 5 cut(s) | 422, 943, 945, 1037, 1276 |
| Hin6I | GCGC | 5 cut(s) | 420, 941, 943, 1035, 1274 |
| HinP1I | GCGC | 5 cut(s) | 420, 941, 943, 1035, 1274 |
| HincII | GTYRAC | 1 cut(s) | 1473 |
| HindII | GTYRAC | 1 cut(s) | 1473 |
| HindIII | AAGCTT | 1 cut(s) | 317 |
| HinfI | GANTC | 1 cut(s) | 602 |
| HpaII | CCGG | 8 cut(s) | 131, 199, 969, 1267, 1277, 1321, 1385, 1560 |
| HphI | GGTGA | 4 cut(s) | 119, 166, 848, 1531 |
| Hpy166II | GTNNAC | 6 cut(s) | 337, 551, 852, 1069, 1473, 1596 |
| Hpy188I | TCNGA | 7 cut(s) | 60, 478, 520, 705, 1012, 1077, 1547 |
| Hpy188III | TCNNGA | 7 cut(s) | 72, 199, 226, 265, 560, 1150, 1354 |
| Hpy8I | GTNNAC | 6 cut(s) | 337, 551, 852, 1069, 1473, 1596 |
| Hpy99I | CGWCG | 3 cut(s) | 90, 1474, 1547 |
| HpyAV | CCTTC | 1 cut(s) | 1048 |
| HpyCH4III | ACNGT | 6 cut(s) | 86, 334, 536, 709, 1031, 1543 |
| HpyCH4IV | ACGT | 2 cut(s) | 471, 1598 |
| HpyCH4V | TGCA | 8 cut(s) | 114, 141, 205, 358, 390, 447, 1333, 1520 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 239, 1330, 1339, 1402, 1526 |
| HpyF3I | CTNAG | 5 cut(s) | 236, 416, 1074, 1315, 1424 |
| HpySE526I | ACGT | 2 cut(s) | 471, 1598 |
| HspAI | GCGC | 5 cut(s) | 420, 941, 943, 1035, 1274 |
| Kpn2I | TCCGGA | 1 cut(s) | 198 |
| KroI | GCCGGC | 1 cut(s) | 1320 |
| KroNI | GCCGGC | 1 cut(s) | 1322 |
| Ksp22I | TGATCA | 1 cut(s) | 1377 |
| Kzo9I | GATC | 6 cut(s) | 455, 657, 1001, 1012, 1377, 1565 |
| LmnI | GCTCC | 3 cut(s) | 303, 971, 1013 |
| Lsp1109I | GCAGC | 5 cut(s) | 283, 659, 1123, 1258, 1560 |
| LweI | GCATC | 3 cut(s) | 192, 957, 1320 |
| MaeI | CTAG | 4 cut(s) | 365, 587, 753, 1515 |
| MaeII | ACGT | 2 cut(s) | 471, 1598 |
| MaeIII | GTNAC | 4 cut(s) | 887, 1097, 1130, 1361 |
| MalI | GATC | 6 cut(s) | 457, 659, 1003, 1014, 1379, 1567 |
| MboI | GATC | 6 cut(s) | 455, 657, 1001, 1012, 1377, 1565 |
| MboII | GAAGA | 2 cut(s) | 784, 1342 |
| MfeI | CAATTG | 1 cut(s) | 543 |
| MflI | RGATCY | 1 cut(s) | 455 |
| MhlI | GDGCHC | 2 cut(s) | 235, 699 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 4 cut(s) | 394, 543, 1082, 1453 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 1 cut(s) | 611 |
| MmeI | TCCRAC | 4 cut(s) | 501, 528, 648, 1525 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroI | TCCGGA | 1 cut(s) | 198 |
| MroNI | GCCGGC | 1 cut(s) | 1320 |
| MroXI | GAANNNNTTC | 2 cut(s) | 320, 580 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 2 cut(s) | 1160, 1284 |
| MslI | CAYNNNNRTG | 3 cut(s) | 597, 767, 1061 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspCI | CTTAAG | 1 cut(s) | 1283 |
| MspI | CCGG | 8 cut(s) | 131, 199, 969, 1267, 1277, 1321, 1385, 1560 |
| MspR9I | CCNGG | 6 cut(s) | 131, 713, 930, 1268, 1385, 1497 |
| MunI | CAATTG | 1 cut(s) | 543 |
| MvaI | CCWGG | 3 cut(s) | 713, 930, 1497 |
| MvnI | CGCG | 3 cut(s) | 943, 945, 1342 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 239, 1330, 1339, 1402, 1526 |
| NaeI | GCCGGC | 1 cut(s) | 1322 |
| NciI | CCSGG | 3 cut(s) | 131, 1268, 1385 |
| NdeII | GATC | 6 cut(s) | 455, 657, 1001, 1012, 1377, 1565 |
| NgoMIV | GCCGGC | 1 cut(s) | 1320 |
| NlaIV | GGNNCC | 3 cut(s) | 135, 457, 1111 |
| NspI | RCATGY | 1 cut(s) | 502 |
| PaeR7I | CTCGAG | 1 cut(s) | 224 |
| PagI | TCATGA | 1 cut(s) | 1353 |
| PauI | GCGCGC | 1 cut(s) | 941 |
| PceI | AGGCCT | 2 cut(s) | 363, 1605 |
| PciI | ACATGT | 1 cut(s) | 498 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 330 |
| PdiI | GCCGGC | 1 cut(s) | 1322 |
| PdmI | GAANNNNTTC | 2 cut(s) | 320, 580 |
| Ple19I | CGATCG | 1 cut(s) | 1568 |
| PleI | GAGTC | 1 cut(s) | 610 |
| PpsI | GAGTC | 1 cut(s) | 610 |
| PscI | ACATGT | 1 cut(s) | 498 |
| PsiI | TTATAA | 1 cut(s) | 900 |
| Psp6I | CCWGG | 3 cut(s) | 711, 928, 1495 |
| PspGI | CCWGG | 3 cut(s) | 711, 928, 1495 |
| PspN4I | GGNNCC | 3 cut(s) | 135, 457, 1111 |
| PspPI | GGNCC | 6 cut(s) | 705, 926, 1066, 1279, 1410, 1460 |
| PsuI | RGATCY | 1 cut(s) | 455 |
| PteI | GCGCGC | 1 cut(s) | 941 |
| PvuI | CGATCG | 1 cut(s) | 1568 |
| RigI | GGCCGGCC | 1 cut(s) | 1324 |
| RsaI | GTAC | 1 cut(s) | 1448 |
| RsaNI | GTAC | 1 cut(s) | 1447 |
| RseI | CAYNNNNRTG | 3 cut(s) | 597, 767, 1061 |
| Rsr2I | CGGWCCG | 1 cut(s) | 705 |
| RsrII | CGGWCCG | 1 cut(s) | 705 |
| SalI | GTCGAC | 1 cut(s) | 1471 |
| SaqAI | TTAA | 2 cut(s) | 1160, 1284 |
| Sau3AI | GATC | 6 cut(s) | 455, 657, 1001, 1012, 1377, 1565 |
| Sau96I | GGNCC | 6 cut(s) | 705, 926, 1066, 1279, 1410, 1460 |
| SchI | GAGTC | 1 cut(s) | 611 |
| ScrFI | CCNGG | 6 cut(s) | 131, 713, 930, 1268, 1385, 1497 |
| SduI | GDGCHC | 2 cut(s) | 235, 699 |
| SfaNI | GCATC | 3 cut(s) | 192, 957, 1320 |
| SfcI | CTRYAG | 1 cut(s) | 1087 |
| Sfr274I | CTCGAG | 1 cut(s) | 224 |
| SinI | GGWCC | 5 cut(s) | 705, 1066, 1279, 1410, 1460 |
| SlaI | CTCGAG | 1 cut(s) | 224 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 597, 767, 1061 |
| SmlI | CTYRAG | 5 cut(s) | 224, 844, 1209, 1260, 1283 |
| SmoI | CTYRAG | 5 cut(s) | 224, 844, 1209, 1260, 1283 |
| SpeI | ACTAGT | 1 cut(s) | 1514 |
| Sse9I | AATT | 4 cut(s) | 394, 543, 1082, 1453 |
| SseBI | AGGCCT | 2 cut(s) | 363, 1605 |
| SspMI | CTAG | 4 cut(s) | 365, 587, 753, 1515 |
| StuI | AGGCCT | 2 cut(s) | 363, 1605 |
| StyD4I | CCNGG | 6 cut(s) | 129, 711, 928, 1266, 1383, 1495 |
| StyI | CCWWGG | 1 cut(s) | 459 |
| TaaI | ACNGT | 6 cut(s) | 86, 334, 536, 709, 1031, 1543 |
| TaiI | ACGT | 2 cut(s) | 474, 1601 |
| TaqI | TCGA | 8 cut(s) | 225, 264, 324, 574, 656, 1297, 1472, 1564 |
| TasI | AATT | 4 cut(s) | 394, 543, 1082, 1453 |
| TatI | WGTACW | 1 cut(s) | 1446 |
| TauI | GCSGC | 5 cut(s) | 289, 425, 719, 734, 948 |
| Tru1I | TTAA | 2 cut(s) | 1160, 1284 |
| Tru9I | TTAA | 2 cut(s) | 1160, 1284 |
| TscAI | CASTG | 3 cut(s) | 244, 1296, 1591 |
| TseI | GCWGC | 5 cut(s) | 296, 647, 1136, 1271, 1573 |
| TspDTI | ATGAA | 7 cut(s) | 472, 925, 1030, 1111, 1342, 1370, 1493 |
| TspGWI | ACGGA | 2 cut(s) | 468, 1581 |
| TspRI | CASTG | 3 cut(s) | 244, 1296, 1591 |
| Vha464I | CTTAAG | 1 cut(s) | 1283 |
| VpaK11BI | GGWCC | 5 cut(s) | 705, 1066, 1279, 1410, 1460 |
| XapI | RAATTY | 1 cut(s) | 1453 |
| XceI | RCATGY | 1 cut(s) | 502 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 144 |
| XhoI | CTCGAG | 1 cut(s) | 224 |
| XmiI | GTMKAC | 2 cut(s) | 851, 1472 |
| XmnI | GAANNNNTTC | 2 cut(s) | 320, 580 |
| XspI | CTAG | 4 cut(s) | 365, 587, 753, 1515 |