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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G51800 |
| fragaria_vesca | FvH4_7g28640 FvH4_7g28640 |
| malus_domestica | MD00G1003400.v1.1 MD01G1192000.v1.1 |
| prunus_persica | Prupe.2G286400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0376121 |
| rosa_laevigata | RLG00000026631 |
| rosa_multiflora | Rmu_ssc0000116.1_g000035 |
| rosa_roxburghii | Rroxscaffold_4G00282390 |
| rosa_rugosa | Rorug01G0393900 Rorug01G0394000 |
| rosa_samantha | Rh1AG405300 Rh1BG368900 Rh1BG369000 Rh1CG381900 Rh1DG398800 |
| rosa_wichuraiana | Rw1G035970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 3 cut(s) | 1097, 2768, 2877 |
| AatII | GACGTC | 1 cut(s) | 1127 |
| Acc36I | ACCTGC | 3 cut(s) | 1097, 2768, 2877 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 182, 522 |
| AccI | GTMKAC | 2 cut(s) | 1800, 1985 |
| AccII | CGCG | 2 cut(s) | 659, 2696 |
| AccIII | TCCGGA | 1 cut(s) | 1590 |
| AclWI | GGATC | 4 cut(s) | 86, 653, 1232, 2188 |
| AcoI | YGGCCR | 2 cut(s) | 1865, 2850 |
| AcsI | RAATTY | 2 cut(s) | 72, 2468 |
| AcuI | CTGAAG | 3 cut(s) | 617, 1866, 2858 |
| AcyI | GRCGYC | 1 cut(s) | 1124 |
| AdeI | CACNNNGTG | 1 cut(s) | 2758 |
| AfaI | GTAC | 7 cut(s) | 262, 673, 1679, 2012, 2215, 2513, 2663 |
| AflIII | ACRYGT | 1 cut(s) | 2736 |
| AgeI | ACCGGT | 1 cut(s) | 1007 |
| AhlI | ACTAGT | 2 cut(s) | 1730, 2210 |
| AjiI | CACGTC | 1 cut(s) | 2737 |
| AjnI | CCWGG | 3 cut(s) | 1287, 1402, 2754 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2801, 2833 |
| AleI | CACNNNNGTG | 1 cut(s) | 1215 |
| Alw21I | GWGCWC | 8 cut(s) | 837, 1212, 2047, 2233, 2496, 2594, 2647, 2805 |
| Alw26I | GTCTC | 6 cut(s) | 238, 384, 648, 1117, 1786, 1910 |
| Alw44I | GTGCAC | 1 cut(s) | 2643 |
| AlwI | GGATC | 4 cut(s) | 86, 653, 1232, 2188 |
| Aor13HI | TCCGGA | 1 cut(s) | 1590 |
| AoxI | GGCC | 8 cut(s) | 228, 397, 1321, 1750, 1865, 2439, 2840, 2850 |
| ApaLI | GTGCAC | 1 cut(s) | 2643 |
| ApeKI | GCWGC | 4 cut(s) | 61, 884, 991, 2672 |
| ApoI | RAATTY | 2 cut(s) | 72, 2468 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1793, 1825 |
| AsiGI | ACCGGT | 1 cut(s) | 1007 |
| AspLEI | GCGC | 2 cut(s) | 2506, 2698 |
| AspS9I | GGNCC | 3 cut(s) | 1022, 1322, 1537 |
| AsuC2I | CCSGG | 2 cut(s) | 1607, 1620 |
| AsuII | TTCGAA | 4 cut(s) | 703, 1314, 1702, 1816 |
| AsuNHI | GCTAGC | 2 cut(s) | 511, 2170 |
| AvaII | GGWCC | 2 cut(s) | 1022, 1537 |
| AxyI | CCTNAGG | 2 cut(s) | 394, 1569 |
| BaeGI | GKGCMC | 1 cut(s) | 2647 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 244, 277 |
| BalI | TGGCCA | 1 cut(s) | 1867 |
| BanII | GRGCYC | 3 cut(s) | 837, 2496, 2805 |
| BauI | CACGAG | 2 cut(s) | 497, 2495 |
| BbsI | GAAGAC | 5 cut(s) | 969, 1080, 1424, 1493, 1801 |
| Bbv12I | GWGCWC | 8 cut(s) | 837, 1212, 2047, 2233, 2496, 2594, 2647, 2805 |
| BbvCI | CCTCAGC | 1 cut(s) | 2795 |
| BbvI | GCAGC | 4 cut(s) | 73, 871, 1003, 2659 |
| BccI | CCATC | 6 cut(s) | 292, 298, 445, 1313, 1402, 1679 |
| BceAI | ACGGC | 2 cut(s) | 215, 2095 |
| BciT130I | CCWGG | 3 cut(s) | 1289, 1404, 2756 |
| BclI | TGATCA | 5 cut(s) | 211, 999, 1060, 2098, 2386 |
| BcnI | CCSGG | 2 cut(s) | 1607, 1620 |
| BcoDI | GTCTC | 6 cut(s) | 238, 384, 648, 1117, 1786, 1910 |
| BcuI | ACTAGT | 2 cut(s) | 1730, 2210 |
| BfaI | CTAG | 9 cut(s) | 249, 512, 855, 1094, 1731, 2132, 2171, 2211, 2217 |
| BfmI | CTRYAG | 2 cut(s) | 1556, 2019 |
| BfoI | RGCGCY | 1 cut(s) | 2507 |
| BfuAI | ACCTGC | 3 cut(s) | 1097, 2768, 2877 |
| BisI | GCNGC | 7 cut(s) | 62, 885, 992, 1240, 2673, 2676, 2850 |
| BlsI | GCNGC | 7 cut(s) | 63, 886, 993, 1241, 2674, 2677, 2851 |
| BmcAI | AGTACT | 2 cut(s) | 262, 2215 |
| Bme1390I | CCNGG | 5 cut(s) | 1289, 1404, 1607, 1620, 2756 |
| Bme18I | GGWCC | 2 cut(s) | 1022, 1537 |
| BmgBI | CACGTC | 1 cut(s) | 2737 |
| BmgT120I | GGNCC | 3 cut(s) | 1022, 1322, 1537 |
| BmiI | GGNNCC | 1 cut(s) | 2615 |
| BmrFI | CCNGG | 5 cut(s) | 1289, 1404, 1607, 1620, 2756 |
| BmrI | ACTGGG | 1 cut(s) | 273 |
| BmsI | GCATC | 4 cut(s) | 116, 1776, 2171, 2781 |
| BmtI | GCTAGC | 2 cut(s) | 515, 2174 |
| BmuI | ACTGGG | 1 cut(s) | 273 |
| BpiI | GAAGAC | 5 cut(s) | 969, 1080, 1424, 1493, 1801 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 853, 885 |
| BpmI | CTGGAG | 4 cut(s) | 1386, 2726, 2789, 2864 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2795, 2837 |
| Bpu14I | TTCGAA | 4 cut(s) | 703, 1314, 1702, 1816 |
| BpuEI | CTTGAG | 2 cut(s) | 1228, 2492 |
| BpuMI | CCSGG | 2 cut(s) | 1607, 1620 |
| BsaAI | YACGTR | 2 cut(s) | 1677, 2515 |
| BsaHI | GRCGYC | 1 cut(s) | 1124 |
| BsaI | GGTCTC | 1 cut(s) | 238 |
| BsaJI | CCNNGG | 8 cut(s) | 516, 544, 1216, 1287, 1302, 1460, 1619, 2442 |
| BsaWI | WCCGGW | 5 cut(s) | 131, 326, 481, 1007, 1590 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1615, 1645, 2699, 2729 |
| Bse118I | RCCGGY | 2 cut(s) | 668, 1007 |
| Bse1I | ACTGG | 5 cut(s) | 258, 268, 577, 1084, 2881 |
| Bse21I | CCTNAGG | 2 cut(s) | 394, 1569 |
| Bse3DI | GCAATG | 2 cut(s) | 200, 275 |
| BseAI | TCCGGA | 1 cut(s) | 1590 |
| BseBI | CCWGG | 3 cut(s) | 1289, 1404, 2756 |
| BseDI | CCNNGG | 8 cut(s) | 516, 544, 1216, 1287, 1302, 1460, 1619, 2442 |
| BseGI | GGATG | 5 cut(s) | 284, 353, 1170, 1765, 1945 |
| BseMI | GCAATG | 2 cut(s) | 200, 275 |
| BseMII | CTCAG | 7 cut(s) | 71, 408, 564, 576, 990, 1560, 2786 |
| BseNI | ACTGG | 5 cut(s) | 258, 268, 577, 1084, 2881 |
| BseRI | GAGGAG | 6 cut(s) | 360, 741, 858, 1586, 2602, 2776 |
| BseSI | GKGCMC | 1 cut(s) | 2647 |
| BseX3I | CGGCCG | 1 cut(s) | 2850 |
| BseXI | GCAGC | 4 cut(s) | 73, 871, 1003, 2659 |
| BseYI | CCCAGC | 1 cut(s) | 691 |
| BsgI | GTGCAG | 2 cut(s) | 1282, 2522 |
| Bsh1236I | CGCG | 2 cut(s) | 659, 2696 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2853 |
| BshFI | GGCC | 8 cut(s) | 230, 399, 1323, 1752, 1867, 2441, 2842, 2852 |
| BshTI | ACCGGT | 1 cut(s) | 1007 |
| BsiEI | CGRYCG | 1 cut(s) | 2853 |
| BsiHKAI | GWGCWC | 8 cut(s) | 837, 1212, 2047, 2233, 2496, 2594, 2647, 2805 |
| BsiSI | CCGG | 9 cut(s) | 132, 327, 482, 669, 1008, 1591, 1606, 1619, 2699 |
| BsiWI | CGTACG | 1 cut(s) | 1677 |
| BslFI | GGGAC | 7 cut(s) | 1622, 1751, 2218, 2576, 2588, 2615, 2763 |
| BsmAI | GTCTC | 6 cut(s) | 238, 384, 648, 1117, 1786, 1910 |
| BsmBI | CGTCTC | 3 cut(s) | 384, 648, 1786 |
| BsmFI | GGGAC | 7 cut(s) | 1622, 1751, 2218, 2576, 2588, 2615, 2763 |
| BsmI | GAATGC | 2 cut(s) | 1261, 2861 |
| BsnI | GGCC | 8 cut(s) | 230, 399, 1323, 1752, 1867, 2441, 2842, 2852 |
| Bso31I | GGTCTC | 1 cut(s) | 238 |
| Bsp119I | TTCGAA | 4 cut(s) | 703, 1314, 1702, 1816 |
| Bsp1286I | GDGCHC | 8 cut(s) | 837, 1212, 2047, 2233, 2496, 2594, 2647, 2805 |
| Bsp13I | TCCGGA | 1 cut(s) | 1590 |
| Bsp19I | CCATGG | 2 cut(s) | 1302, 1460 |
| BspANI | GGCC | 8 cut(s) | 230, 399, 1323, 1752, 1867, 2441, 2842, 2852 |
| BspCNI | CTCAG | 7 cut(s) | 70, 407, 563, 575, 989, 1561, 2787 |
| BspEI | TCCGGA | 1 cut(s) | 1590 |
| BspFNI | CGCG | 2 cut(s) | 659, 2696 |
| BspHI | TCATGA | 1 cut(s) | 1002 |
| BspLI | GGNNCC | 1 cut(s) | 2615 |
| BspMI | ACCTGC | 3 cut(s) | 1097, 2768, 2877 |
| BspOI | GCTAGC | 2 cut(s) | 515, 2174 |
| BspPI | GGATC | 4 cut(s) | 86, 653, 1232, 2188 |
| BspT104I | TTCGAA | 4 cut(s) | 703, 1314, 1702, 1816 |
| BspTNI | GGTCTC | 1 cut(s) | 238 |
| BsrDI | GCAATG | 2 cut(s) | 200, 275 |
| BsrFI | RCCGGY | 2 cut(s) | 668, 1007 |
| BsrI | ACTGG | 5 cut(s) | 258, 268, 577, 1084, 2881 |
| BssAI | RCCGGY | 2 cut(s) | 668, 1007 |
| BssECI | CCNNGG | 8 cut(s) | 516, 544, 1216, 1287, 1302, 1460, 1619, 2442 |
| BssNAI | GTATAC | 1 cut(s) | 1986 |
| BssNI | GRCGYC | 1 cut(s) | 1124 |
| BssSI | CACGAG | 2 cut(s) | 497, 2495 |
| BssT1I | CCWWGG | 5 cut(s) | 516, 544, 1302, 1460, 2442 |
| Bst1107I | GTATAC | 1 cut(s) | 1986 |
| Bst2BI | CACGAG | 2 cut(s) | 497, 2495 |
| Bst2UI | CCWGG | 3 cut(s) | 1289, 1404, 2756 |
| Bst4CI | ACNGT | 8 cut(s) | 114, 121, 843, 900, 1217, 2264, 2323, 2892 |
| Bst6I | CTCTTC | 5 cut(s) | 447, 457, 813, 1120, 1908 |
| BstACI | GRCGYC | 1 cut(s) | 1124 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2642 |
| BstBAI | YACGTR | 2 cut(s) | 1677, 2515 |
| BstBI | TTCGAA | 4 cut(s) | 703, 1314, 1702, 1816 |
| BstC8I | GCNNGC | 6 cut(s) | 513, 804, 837, 1269, 1297, 2172 |
| BstDEI | CTNAG | 9 cut(s) | 57, 394, 550, 562, 976, 1569, 2048, 2795, 2837 |
| BstDSI | CCRYGG | 3 cut(s) | 1216, 1302, 1460 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 975, 1329 |
| BstF5I | GGATG | 5 cut(s) | 284, 353, 1170, 1765, 1945 |
| BstFNI | CGCG | 2 cut(s) | 659, 2696 |
| BstH2I | RGCGCY | 1 cut(s) | 2507 |
| BstHHI | GCGC | 2 cut(s) | 2506, 2698 |
| BstMAI | GTCTC | 6 cut(s) | 238, 384, 648, 1117, 1786, 1910 |
| BstMCI | CGRYCG | 1 cut(s) | 2853 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 67, 274, 527, 665, 1245, 2531, 2642, 2791, 2800 |
| BstNI | CCWGG | 3 cut(s) | 1289, 1404, 2756 |
| BstNSI | RCATGY | 1 cut(s) | 691 |
| BstSCI | CCNGG | 5 cut(s) | 1287, 1402, 1605, 1618, 2754 |
| BstSFI | CTRYAG | 2 cut(s) | 1556, 2019 |
| BstSLI | GKGCMC | 1 cut(s) | 2647 |
| BstUI | CGCG | 2 cut(s) | 659, 2696 |
| BstV1I | GCAGC | 4 cut(s) | 73, 871, 1003, 2659 |
| BstV2I | GAAGAC | 5 cut(s) | 969, 1080, 1424, 1493, 1801 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2527 |
| BstZ17I | GTATAC | 1 cut(s) | 1986 |
| BstZI | CGGCCG | 1 cut(s) | 2850 |
| Bsu36I | CCTNAGG | 2 cut(s) | 394, 1569 |
| BsuRI | GGCC | 8 cut(s) | 230, 399, 1323, 1752, 1867, 2441, 2842, 2852 |
| BtgI | CCRYGG | 3 cut(s) | 1216, 1302, 1460 |
| BtrI | CACGTC | 1 cut(s) | 2737 |
| BtsCI | GGATG | 5 cut(s) | 284, 353, 1170, 1765, 1945 |
| BtsI | GCAGTG | 1 cut(s) | 2534 |
| BtsIMutI | CAGTG | 6 cut(s) | 187, 570, 2269, 2328, 2534, 2888 |
| BveI | ACCTGC | 3 cut(s) | 1097, 2768, 2877 |
| Cac8I | GCNNGC | 6 cut(s) | 513, 804, 837, 1269, 1297, 2172 |
| CciI | TCATGA | 1 cut(s) | 1002 |
| CfoI | GCGC | 2 cut(s) | 2506, 2698 |
| Cfr10I | RCCGGY | 2 cut(s) | 668, 1007 |
| Cfr13I | GGNCC | 3 cut(s) | 1022, 1322, 1537 |
| CseI | GACGC | 2 cut(s) | 665, 2101 |
| CsiI | ACCWGGT | 1 cut(s) | 2754 |
| Csp6I | GTAC | 7 cut(s) | 261, 672, 1678, 2011, 2214, 2512, 2662 |
| CspAI | ACCGGT | 1 cut(s) | 1007 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2333, 2368 |
| CviQI | GTAC | 7 cut(s) | 261, 672, 1678, 2011, 2214, 2512, 2662 |
| DdeI | CTNAG | 9 cut(s) | 57, 394, 550, 562, 976, 1569, 2048, 2795, 2837 |
| DraIII | CACNNNGTG | 1 cut(s) | 2758 |
| EaeI | YGGCCR | 2 cut(s) | 1865, 2850 |
| EagI | CGGCCG | 1 cut(s) | 2850 |
| Eam1104I | CTCTTC | 5 cut(s) | 447, 457, 813, 1120, 1908 |
| EarI | CTCTTC | 5 cut(s) | 447, 457, 813, 1120, 1908 |
| EciI | GGCGGA | 1 cut(s) | 2693 |
| Ecl136II | GAGCTC | 3 cut(s) | 835, 2494, 2803 |
| EclXI | CGGCCG | 1 cut(s) | 2850 |
| Eco130I | CCWWGG | 5 cut(s) | 516, 544, 1302, 1460, 2442 |
| Eco24I | GRGCYC | 3 cut(s) | 837, 2496, 2805 |
| Eco31I | GGTCTC | 1 cut(s) | 238 |
| Eco32I | GATATC | 1 cut(s) | 568 |
| Eco47I | GGWCC | 2 cut(s) | 1022, 1537 |
| Eco52I | CGGCCG | 1 cut(s) | 2850 |
| Eco53kI | GAGCTC | 3 cut(s) | 835, 2494, 2803 |
| Eco57I | CTGAAG | 3 cut(s) | 617, 1866, 2858 |
| Eco81I | CCTNAGG | 2 cut(s) | 394, 1569 |
| EcoICRI | GAGCTC | 3 cut(s) | 835, 2494, 2803 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 975, 1329 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1022 |
| EcoRII | CCWGG | 3 cut(s) | 1287, 1402, 2754 |
| EcoRV | GATATC | 1 cut(s) | 568 |
| EcoT14I | CCWWGG | 5 cut(s) | 516, 544, 1302, 1460, 2442 |
| EcoT38I | GRGCYC | 3 cut(s) | 837, 2496, 2805 |
| ErhI | CCWWGG | 5 cut(s) | 516, 544, 1302, 1460, 2442 |
| Esp3I | CGTCTC | 3 cut(s) | 384, 648, 1786 |
| FaqI | GGGAC | 7 cut(s) | 1622, 1751, 2218, 2576, 2588, 2615, 2763 |
| FauI | CCCGC | 1 cut(s) | 2195 |
| FbaI | TGATCA | 5 cut(s) | 211, 999, 1060, 2098, 2386 |
| FblI | GTMKAC | 2 cut(s) | 1800, 1985 |
| Fnu4HI | GCNGC | 7 cut(s) | 62, 885, 992, 1240, 2673, 2676, 2850 |
| FokI | GGATG | 5 cut(s) | 271, 340, 1177, 1772, 1932 |
| FriOI | GRGCYC | 3 cut(s) | 837, 2496, 2805 |
| Fsp4HI | GCNGC | 7 cut(s) | 62, 885, 992, 1240, 2673, 2676, 2850 |
| FspBI | CTAG | 9 cut(s) | 249, 512, 855, 1094, 1731, 2132, 2171, 2211, 2217 |
| GlaI | GCGC | 2 cut(s) | 2505, 2697 |
| GluI | GCNGC | 7 cut(s) | 62, 885, 992, 1240, 2673, 2676, 2850 |
| GsaI | CCCAGC | 1 cut(s) | 695 |
| GsuI | CTGGAG | 4 cut(s) | 1386, 2726, 2789, 2864 |
| HaeII | RGCGCY | 1 cut(s) | 2507 |
| HaeIII | GGCC | 8 cut(s) | 230, 399, 1323, 1752, 1867, 2441, 2842, 2852 |
| HapII | CCGG | 9 cut(s) | 132, 327, 482, 669, 1008, 1591, 1606, 1619, 2699 |
| HgaI | GACGC | 2 cut(s) | 665, 2101 |
| HhaI | GCGC | 2 cut(s) | 2506, 2698 |
| Hin1I | GRCGYC | 1 cut(s) | 1124 |
| Hin6I | GCGC | 2 cut(s) | 2504, 2696 |
| HinP1I | GCGC | 2 cut(s) | 2504, 2696 |
| HincII | GTYRAC | 4 cut(s) | 117, 578, 1364, 1801 |
| HindII | GTYRAC | 4 cut(s) | 117, 578, 1364, 1801 |
| HindIII | AAGCTT | 6 cut(s) | 275, 788, 1045, 1246, 1308, 1848 |
| HpaI | GTTAAC | 1 cut(s) | 117 |
| HpaII | CCGG | 9 cut(s) | 132, 327, 482, 669, 1008, 1591, 1606, 1619, 2699 |
| Hpy166II | GTNNAC | 8 cut(s) | 117, 578, 1364, 1603, 1801, 1986, 2645, 2734 |
| Hpy188III | TCNNGA | 9 cut(s) | 98, 855, 1003, 1041, 1228, 1252, 1472, 1591, 2806 |
| Hpy8I | GTNNAC | 8 cut(s) | 117, 578, 1364, 1603, 1801, 1986, 2645, 2734 |
| Hpy99I | CGWCG | 6 cut(s) | 1126, 1149, 2116, 2428, 2492, 2633 |
| HpyAV | CCTTC | 9 cut(s) | 413, 957, 1013, 1129, 1196, 1433, 1753, 1928, 1959 |
| HpyCH4III | ACNGT | 8 cut(s) | 114, 121, 843, 900, 1217, 2264, 2323, 2892 |
| HpyCH4IV | ACGT | 7 cut(s) | 1101, 1124, 1599, 1676, 1982, 2514, 2736 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 67, 274, 527, 665, 1245, 2531, 2642, 2791, 2800 |
| HpyF3I | CTNAG | 9 cut(s) | 57, 394, 550, 562, 976, 1569, 2048, 2795, 2837 |
| HpySE526I | ACGT | 7 cut(s) | 1101, 1124, 1599, 1676, 1982, 2514, 2736 |
| Hsp92I | GRCGYC | 1 cut(s) | 1124 |
| HspAI | GCGC | 2 cut(s) | 2504, 2696 |
| Kpn2I | TCCGGA | 1 cut(s) | 1590 |
| Ksp22I | TGATCA | 5 cut(s) | 211, 999, 1060, 2098, 2386 |
| KspAI | GTTAAC | 1 cut(s) | 117 |
| Lsp1109I | GCAGC | 4 cut(s) | 73, 871, 1003, 2659 |
| LweI | GCATC | 4 cut(s) | 116, 1776, 2171, 2781 |
| MabI | ACCWGGT | 1 cut(s) | 2754 |
| MaeI | CTAG | 9 cut(s) | 249, 512, 855, 1094, 1731, 2132, 2171, 2211, 2217 |
| MaeII | ACGT | 7 cut(s) | 1101, 1124, 1599, 1676, 1982, 2514, 2736 |
| MhlI | GDGCHC | 8 cut(s) | 837, 1212, 2047, 2233, 2496, 2594, 2647, 2805 |
| MlsI | TGGCCA | 1 cut(s) | 1867 |
| MluCI | AATT | 4 cut(s) | 72, 221, 1149, 2468 |
| MluNI | TGGCCA | 1 cut(s) | 1867 |
| MlyI | GAGTC | 3 cut(s) | 304, 859, 1733 |
| MmeI | TCCRAC | 3 cut(s) | 2094, 2364, 2406 |
| Mox20I | TGGCCA | 1 cut(s) | 1867 |
| MroI | TCCGGA | 1 cut(s) | 1590 |
| MscI | TGGCCA | 1 cut(s) | 1867 |
| MseI | TTAA | 3 cut(s) | 116, 150, 2186 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1215, 2906 |
| Msp20I | TGGCCA | 1 cut(s) | 1867 |
| MspA1I | CMGCKG | 3 cut(s) | 2202, 2360, 2653 |
| MspI | CCGG | 9 cut(s) | 132, 327, 482, 669, 1008, 1591, 1606, 1619, 2699 |
| MspR9I | CCNGG | 5 cut(s) | 1289, 1404, 1607, 1620, 2756 |
| Mva1269I | GAATGC | 2 cut(s) | 1261, 2861 |
| MvaI | CCWGG | 3 cut(s) | 1289, 1404, 2756 |
| MvnI | CGCG | 2 cut(s) | 659, 2696 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 67, 274, 527, 665, 1245, 2531, 2642, 2791, 2800 |
| NciI | CCSGG | 2 cut(s) | 1607, 1620 |
| NcoI | CCATGG | 2 cut(s) | 1302, 1460 |
| NheI | GCTAGC | 2 cut(s) | 511, 2170 |
| NlaIV | GGNNCC | 1 cut(s) | 2615 |
| NmeAIII | GCCGAG | 1 cut(s) | 649 |
| NspI | RCATGY | 1 cut(s) | 691 |
| NspV | TTCGAA | 4 cut(s) | 703, 1314, 1702, 1816 |
| OliI | CACNNNNGTG | 1 cut(s) | 1215 |
| PagI | TCATGA | 1 cut(s) | 1002 |
| PaqCI | CACCTGC | 3 cut(s) | 1097, 2768, 2877 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1130 |
| PctI | GAATGC | 2 cut(s) | 1261, 2861 |
| PfeI | GAWTC | 8 cut(s) | 235, 1159, 1178, 1231, 1283, 1436, 2656, 2809 |
| Pfl23II | CGTACG | 1 cut(s) | 1677 |
| PflFI | GACNNNGTC | 1 cut(s) | 1805 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 182, 522 |
| PinAI | ACCGGT | 1 cut(s) | 1007 |
| PkrI | GCNGC | 7 cut(s) | 63, 886, 993, 1241, 2674, 2677, 2851 |
| PleI | GAGTC | 3 cut(s) | 304, 859, 1733 |
| PpsI | GAGTC | 3 cut(s) | 304, 859, 1733 |
| Ppu21I | YACGTR | 2 cut(s) | 1677, 2515 |
| PpuMI | RGGWCCY | 1 cut(s) | 1022 |
| Psp124BI | GAGCTC | 3 cut(s) | 837, 2496, 2805 |
| Psp5II | RGGWCCY | 1 cut(s) | 1022 |
| Psp6I | CCWGG | 3 cut(s) | 1287, 1402, 2754 |
| PspFI | CCCAGC | 1 cut(s) | 691 |
| PspGI | CCWGG | 3 cut(s) | 1287, 1402, 2754 |
| PspLI | CGTACG | 1 cut(s) | 1677 |
| PspN4I | GGNNCC | 1 cut(s) | 2615 |
| PspPI | GGNCC | 3 cut(s) | 1022, 1322, 1537 |
| PspPPI | RGGWCCY | 1 cut(s) | 1022 |
| PsyI | GACNNNGTC | 1 cut(s) | 1805 |
| PvuII | CAGCTG | 1 cut(s) | 2653 |
| RsaI | GTAC | 7 cut(s) | 262, 673, 1679, 2012, 2215, 2513, 2663 |
| RsaNI | GTAC | 7 cut(s) | 261, 672, 1678, 2011, 2214, 2512, 2662 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1215, 2906 |
| SacI | GAGCTC | 3 cut(s) | 837, 2496, 2805 |
| SalI | GTCGAC | 1 cut(s) | 1799 |
| SaqAI | TTAA | 3 cut(s) | 116, 150, 2186 |
| SatI | GCNGC | 7 cut(s) | 62, 885, 992, 1240, 2673, 2676, 2850 |
| Sau96I | GGNCC | 3 cut(s) | 1022, 1322, 1537 |
| ScaI | AGTACT | 2 cut(s) | 262, 2215 |
| SchI | GAGTC | 3 cut(s) | 304, 859, 1733 |
| ScrFI | CCNGG | 5 cut(s) | 1289, 1404, 1607, 1620, 2756 |
| SduI | GDGCHC | 8 cut(s) | 837, 1212, 2047, 2233, 2496, 2594, 2647, 2805 |
| SexAI | ACCWGGT | 1 cut(s) | 2754 |
| SfaNI | GCATC | 4 cut(s) | 116, 1776, 2171, 2781 |
| SfcI | CTRYAG | 2 cut(s) | 1556, 2019 |
| SfuI | TTCGAA | 4 cut(s) | 703, 1314, 1702, 1816 |
| SinI | GGWCC | 2 cut(s) | 1022, 1537 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1215, 2906 |
| SmlI | CTYRAG | 2 cut(s) | 1243, 2507 |
| SmoI | CTYRAG | 2 cut(s) | 1243, 2507 |
| SpeI | ACTAGT | 2 cut(s) | 1730, 2210 |
| Sse9I | AATT | 4 cut(s) | 72, 221, 1149, 2468 |
| SspI | AATATT | 1 cut(s) | 2299 |
| SspMI | CTAG | 9 cut(s) | 249, 512, 855, 1094, 1731, 2132, 2171, 2211, 2217 |
| SstI | GAGCTC | 3 cut(s) | 837, 2496, 2805 |
| StyD4I | CCNGG | 5 cut(s) | 1287, 1402, 1605, 1618, 2754 |
| StyI | CCWWGG | 5 cut(s) | 516, 544, 1302, 1460, 2442 |
| TaaI | ACNGT | 8 cut(s) | 114, 121, 843, 900, 1217, 2264, 2323, 2892 |
| TaiI | ACGT | 7 cut(s) | 1104, 1127, 1602, 1679, 1985, 2517, 2739 |
| TaqI | TCGA | 9 cut(s) | 703, 1121, 1147, 1314, 1504, 1702, 1800, 1816, 2628 |
| TasI | AATT | 4 cut(s) | 72, 221, 1149, 2468 |
| TatI | WGTACW | 2 cut(s) | 260, 2213 |
| TauI | GCSGC | 3 cut(s) | 1242, 2678, 2852 |
| TfiI | GAWTC | 8 cut(s) | 235, 1159, 1178, 1231, 1283, 1436, 2656, 2809 |
| Tru1I | TTAA | 3 cut(s) | 116, 150, 2186 |
| Tru9I | TTAA | 3 cut(s) | 116, 150, 2186 |
| TscAI | CASTG | 6 cut(s) | 187, 577, 2269, 2328, 2541, 2895 |
| TseI | GCWGC | 4 cut(s) | 61, 884, 991, 2672 |
| TspDTI | ATGAA | 5 cut(s) | 189, 1107, 1735, 1934, 2542 |
| TspGWI | ACGGA | 3 cut(s) | 1416, 2609, 2649 |
| TspRI | CASTG | 6 cut(s) | 187, 577, 2269, 2328, 2541, 2895 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1805 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 182, 522 |
| VneI | GTGCAC | 1 cut(s) | 2643 |
| VpaK11BI | GGWCC | 2 cut(s) | 1022, 1537 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 975, 1329 |
| XapI | RAATTY | 2 cut(s) | 72, 2468 |
| XbaI | TCTAGA | 1 cut(s) | 854 |
| XceI | RCATGY | 1 cut(s) | 691 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1960, 2527 |
| XmiI | GTMKAC | 2 cut(s) | 1800, 1985 |
| XspI | CTAG | 9 cut(s) | 249, 512, 855, 1094, 1731, 2132, 2171, 2211, 2217 |
| ZraI | GACGTC | 1 cut(s) | 1125 |
| ZrmI | AGTACT | 2 cut(s) | 262, 2215 |