FvH4_7g30550

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017369
Physical Location & Seq
Forward (+)
22225770 .. 22226833
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30550.t1

Sequence Viewer

Length: 537 bp
ATGAGGGACGAAGAAAGTCGCCGGAAGAGAACCAGGTGCCTGGCATGCATAGCTTTCGGAGTCATAGCGCAGACGATTATCATCGTCCTCTTCGTGGTGATAGTCATGCGCGTCAAGACCCCAAAAGTCCGTCTAGAATCCGTCGGCGTCACCACTCTCACCGCAAGCAACTCCTCCTTAAAAGCCAGTATCGACGCGCTTGTCACAGTCAAGAACAAGAACTTCGGGCACTACAAGTTCGAGAGCGCCAAGGCGACTTTTAGCTACAAAGGGACTAATATAGGAGAGGGCACCATATCCAAGGACAAAGCCAAGGCGAAGAAGACCAAGAAGATCAATGTGACGGTGTCGTTGAACTCGGACAAGATCACGGCGAGCGACATAAGCTCCGGGAATGTGACATTGACGGCGTATGCTAAGTTGGACGGTAAGGTTCATCTTCTGAACATTATCAAGAAGAAGAAGTCTTCCGAGTTGAACTGCACCATTCATGTGGATACTAAGGCCAAAGCGGTACATGTTTTGAGTTGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

179

Amino Acids

19.4

Weight (kDa)

10.05

Isoelectric Point (pI)

29.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 68 - 162 5.4e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30550
malus_domestica MD01G1210900.v1.1 MD07G1281400.v1.1
prunus_persica Prupe.2G303200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0379391
rosa_laevigata RLG00000026403
rosa_multiflora Rmu_sc0000556.1_g000001
rosa_roxburghii Rroxscaffold_4G00280200 Rroxscaffold_5G00373480
rosa_rugosa Rorug01G0411800
rosa_samantha Rh1AG434300 Rh1BG392100
rosa_wichuraiana Rw1G037960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AccB1I GGYRCC 2 cut(s) 36, 290
AccII CGCG 2 cut(s) 111, 197
AciI CCGC 2 cut(s) 162, 512
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 1 cut(s) 516
AfiI CCNNNNNNNGG 1 cut(s) 94
AflIII ACRYGT 1 cut(s) 517
AgsI TTSAA 2 cut(s) 355, 478
AjnI CCWGG 2 cut(s) 32, 39
AluBI AGCT 3 cut(s) 53, 264, 387
AluI AGCT 3 cut(s) 53, 264, 387
AoxI GGCC 1 cut(s) 504
AspLEI GCGC 4 cut(s) 70, 111, 199, 248
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 3 cut(s) 109, 142, 151
BaeGI GKGCMC 2 cut(s) 231, 293
BanI GGYRCC 2 cut(s) 36, 290
BbsI GAAGAC 2 cut(s) 329, 459
BceAI ACGGC 2 cut(s) 387, 423
BcgI CGANNNNNNTGC 2 cut(s) 37, 71
BciT130I CCWGG 2 cut(s) 34, 41
BciVI GTATCC 1 cut(s) 490
BcnI CCSGG 1 cut(s) 391
BfaI CTAG 1 cut(s) 134
BfoI RGCGCY 1 cut(s) 249
BfuI GTATCC 1 cut(s) 490
Bme1390I CCNGG 3 cut(s) 34, 41, 391
BmiI GGNNCC 2 cut(s) 38, 292
BmrFI CCNGG 3 cut(s) 34, 41, 391
BpiI GAAGAC 2 cut(s) 329, 459
BpuMI CCSGG 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 80
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 3 cut(s) 249, 300, 312
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 80
BseBI CCWGG 2 cut(s) 34, 41
BseDI CCNNGG 3 cut(s) 249, 300, 312
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 163
BseSI GKGCMC 2 cut(s) 231, 293
BsgI GTGCAG 1 cut(s) 466
Bsh1236I CGCG 2 cut(s) 111, 197
BshFI GGCC 1 cut(s) 506
BshNI GGYRCC 2 cut(s) 36, 290
BsiSI CCGG 2 cut(s) 22, 390
BslFI GGGAC 2 cut(s) 20, 286
BslI CCNNNNNNNGG 1 cut(s) 94
BsmFI GGGAC 2 cut(s) 20, 286
BsnI GGCC 1 cut(s) 506
Bsp1286I GDGCHC 2 cut(s) 231, 293
Bsp143I GATC 2 cut(s) 333, 366
BspACI CCGC 2 cut(s) 162, 512
BspANI GGCC 1 cut(s) 506
BspFNI CGCG 2 cut(s) 111, 197
BspLI GGNNCC 2 cut(s) 38, 292
BspT107I GGYRCC 2 cut(s) 36, 290
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 3 cut(s) 249, 300, 312
BssMI GATC 2 cut(s) 333, 366
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 3 cut(s) 249, 300, 312
Bst2UI CCWGG 2 cut(s) 34, 41
Bst4CI ACNGT 3 cut(s) 208, 346, 428
Bst6I CTCTTC 2 cut(s) 20, 95
BstACI GRCGYC 1 cut(s) 147
BstC8I GCNNGC 3 cut(s) 46, 166, 376
BstDEI CTNAG 2 cut(s) 417, 501
BstFNI CGCG 2 cut(s) 111, 197
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 4 cut(s) 70, 111, 199, 248
BstKTI GATC 2 cut(s) 336, 369
BstMBI GATC 2 cut(s) 333, 366
BstMWI GCNNNNNNNGC 3 cut(s) 45, 50, 384
BstNI CCWGG 2 cut(s) 34, 41
BstNSI RCATGY 2 cut(s) 48, 521
BstSCI CCNGG 3 cut(s) 32, 39, 389
BstSLI GKGCMC 2 cut(s) 231, 293
BstUI CGCG 2 cut(s) 111, 197
BstV2I GAAGAC 2 cut(s) 329, 459
BstXI CCANNNNNNTGG 2 cut(s) 40, 493
BsuI GTATCC 1 cut(s) 490
BsuRI GGCC 1 cut(s) 506
Cac8I GCNNGC 3 cut(s) 46, 166, 376
CfoI GCGC 4 cut(s) 70, 111, 199, 248
CseI GACGC 3 cut(s) 100, 136, 203
CsiI ACCWGGT 1 cut(s) 32
Csp6I GTAC 1 cut(s) 515
CviAII CATG 4 cut(s) 45, 106, 491, 518
CviJI RGCY 6 cut(s) 53, 185, 264, 311, 387, 506
CviKI_1 RGCY 6 cut(s) 53, 185, 264, 311, 387, 506
CviQI GTAC 1 cut(s) 515
DdeI CTNAG 2 cut(s) 417, 501
DpnI GATC 2 cut(s) 335, 368
DpnII GATC 2 cut(s) 333, 366
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
Eam1104I CTCTTC 2 cut(s) 20, 95
EarI CTCTTC 2 cut(s) 20, 95
Eco130I CCWWGG 3 cut(s) 249, 300, 312
EcoRII CCWGG 2 cut(s) 32, 39
EcoT14I CCWWGG 3 cut(s) 249, 300, 312
EcoT22I ATGCAT 1 cut(s) 50
ErhI CCWWGG 3 cut(s) 249, 300, 312
FaeI CATG 4 cut(s) 48, 109, 494, 521
FaqI GGGAC 2 cut(s) 20, 286
FatI CATG 4 cut(s) 44, 105, 490, 517
FspBI CTAG 1 cut(s) 134
GlaI GCGC 4 cut(s) 69, 110, 198, 247
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 1 cut(s) 506
HapII CCGG 2 cut(s) 22, 390
HgaI GACGC 3 cut(s) 100, 136, 203
HhaI GCGC 4 cut(s) 70, 111, 199, 248
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 4 cut(s) 48, 109, 494, 521
Hin6I GCGC 4 cut(s) 68, 109, 197, 246
HinP1I GCGC 4 cut(s) 68, 109, 197, 246
HinfI GANTC 2 cut(s) 60, 137
HpaII CCGG 2 cut(s) 22, 390
HphI GGTGA 3 cut(s) 109, 142, 151
Hpy188I TCNGA 4 cut(s) 59, 361, 444, 472
Hpy188III TCNNGA 5 cut(s) 115, 134, 211, 241, 454
Hpy99I CGWCG 2 cut(s) 146, 197
HpyCH4III ACNGT 3 cut(s) 208, 346, 428
HpyCH4V TGCA 3 cut(s) 48, 483, 531
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 50, 384
HpyF3I CTNAG 2 cut(s) 417, 501
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 4 cut(s) 48, 109, 494, 521
HspAI GCGC 4 cut(s) 68, 109, 197, 246
Kzo9I GATC 2 cut(s) 333, 366
LmnI GCTCC 1 cut(s) 392
LpnPI CCDG 7 cut(s) 19, 26, 35, 46, 53, 199, 403
MabI ACCWGGT 1 cut(s) 32
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 4 cut(s) 148, 202, 340, 397
MalI GATC 2 cut(s) 335, 368
MboI GATC 2 cut(s) 333, 366
MhlI GDGCHC 2 cut(s) 231, 293
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 402
MnlI CCTC 3 cut(s) 98, 184, 280
Mph1103I ATGCAT 1 cut(s) 50
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 491
MspI CCGG 2 cut(s) 22, 390
MspR9I CCNGG 3 cut(s) 34, 41, 391
MvaI CCWGG 2 cut(s) 34, 41
MvnI CGCG 2 cut(s) 111, 197
MwoI GCNNNNNNNGC 3 cut(s) 45, 50, 384
NciI CCSGG 1 cut(s) 391
NdeII GATC 2 cut(s) 333, 366
NlaIII CATG 4 cut(s) 48, 109, 494, 521
NlaIV GGNNCC 2 cut(s) 38, 292
NmuCI GTSAC 4 cut(s) 148, 202, 340, 397
NsiI ATGCAT 1 cut(s) 50
NspI RCATGY 2 cut(s) 48, 521
PaeI GCATGC 1 cut(s) 48
PciI ACATGT 1 cut(s) 517
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 1 cut(s) 137
PflFI GACNNNGTC 1 cut(s) 346
PfoI TCCNGGA 1 cut(s) 389
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PscI ACATGT 1 cut(s) 517
Psp6I CCWGG 2 cut(s) 32, 39
PspGI CCWGG 2 cut(s) 32, 39
PspN4I GGNNCC 2 cut(s) 38, 292
PsyI GACNNNGTC 1 cut(s) 346
RsaI GTAC 1 cut(s) 516
RsaNI GTAC 1 cut(s) 515
RseI CAYNNNNRTG 1 cut(s) 491
SaqAI TTAA 1 cut(s) 179
Sau3AI GATC 2 cut(s) 333, 366
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 3 cut(s) 34, 41, 391
SduI GDGCHC 2 cut(s) 231, 293
SetI ASST 5 cut(s) 38, 55, 266, 389, 435
SexAI ACCWGGT 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 491
SphI GCATGC 1 cut(s) 48
SsiI CCGC 2 cut(s) 162, 512
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 3 cut(s) 32, 39, 389
StyI CCWWGG 3 cut(s) 249, 300, 312
TaaI ACNGT 3 cut(s) 208, 346, 428
TaqI TCGA 2 cut(s) 192, 240
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseFI GTSAC 4 cut(s) 148, 202, 340, 397
Tsp45I GTSAC 4 cut(s) 148, 202, 340, 397
TspDTI ATGAA 2 cut(s) 425, 479
TspGWI ACGGA 2 cut(s) 119, 130
Tth111I GACNNNGTC 1 cut(s) 346
XbaI TCTAGA 1 cut(s) 133
XceI RCATGY 2 cut(s) 48, 521
XspI CTAG 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.