MD07G1281400.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0017369
Physical Location & Seq
Forward (+)
34472192 .. 34472761
570 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1281400.v1.1.491

Sequence Viewer

Length: 570 bp
ATGACAACCGGAACCGAAGATTCTCGCCGGAAGCGAAACAGGTGCTTGCTGTGCATAGCCGCTGGGATCATAGCACAAACCATCATCATAGTCCTTTTTGTGGTTTTCGTCCTCCGAGTCAAAACTCCCAAAGTCCGCTTAGACTCGGTTGCAGTCAACTCACTTGCCACAAGCTCCAGCTCCTCTTCTCCTTCCTTCAAGATTGAAATCAATGCCGTTGTTGCGGTAAAAAACAACAACTTTGGACACTACAAGTTCGAGAGCAGCAAGGCAACTTTCTCGTACAAAGGCACCGAGGTCGGCGAGGGAACCATAGCTAAGGAAAAAGCTAAGGCTAAGAAAACAAAGAGGATTAATGTTGTAGTGTCGTTGAGTTCGAACAAGGTTTCGAGCCACTCTGAGTTGAGTAGCGATCTGAGGTCTGGGAATTTGACTTTGACGGCGTACGCTAAGTTGGATGGGAAGGTTCATCTGTTGAACGTTCTCAAGAAGAAGAAGTCTGCCGATTTGAACTGCACCATAAATCTTGATATTAAAGCCAAAATGGTCCGCGTATTAACTTGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

190

Amino Acids

20.56

Weight (kDa)

10.11

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 74 - 173 3.8e-08 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30550
malus_domestica MD01G1210900.v1.1 MD07G1281400.v1.1
prunus_persica Prupe.2G303200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0379391
rosa_laevigata RLG00000026403
rosa_multiflora Rmu_sc0000556.1_g000001
rosa_roxburghii Rroxscaffold_4G00280200 Rroxscaffold_5G00373480
rosa_rugosa Rorug01G0411800
rosa_samantha Rh1AG434300 Rh1BG392100
rosa_wichuraiana Rw1G037960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 290
AccII CGCG 1 cut(s) 552
AciI CCGC 4 cut(s) 60, 136, 224, 550
AclI AACGTT 1 cut(s) 480
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 427
AfaI GTAC 2 cut(s) 284, 446
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 4 cut(s) 199, 206, 478, 511
AluBI AGCT 4 cut(s) 174, 180, 317, 329
AluI AGCT 4 cut(s) 174, 180, 317, 329
AlwI GGATC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 427
AseI ATTAAT 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 547
AsuII TTCGAA 1 cut(s) 377
AvaII GGWCC 1 cut(s) 547
BanI GGYRCC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 276
BccI CCATC 2 cut(s) 89, 452
BceAI ACGGC 2 cut(s) 200, 456
BcgI CGANNNNNNTGC 6 cut(s) 24, 58, 261, 280, 295, 314
BisI GCNGC 2 cut(s) 60, 265
BlsI GCNGC 2 cut(s) 61, 266
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 3 cut(s) 13, 292, 310
BpmI CTGGAG 1 cut(s) 160
Bpu10I CCTNAGC 2 cut(s) 318, 330
Bpu14I TTCGAA 1 cut(s) 377
BpuEI CTTGAG 1 cut(s) 470
BsaBI GATNNNNATC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse8I GATNNNNATC 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 463
BseJI GATNNNNATC 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 390, 407
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 276
BseYI CCCAGC 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 499
Bsh1236I CGCG 1 cut(s) 552
BshNI GGYRCC 1 cut(s) 290
BsiSI CCGG 2 cut(s) 9, 28
BsiWI CGTACG 1 cut(s) 444
BslI CCNNNNNNNGG 1 cut(s) 100
Bsp119I TTCGAA 1 cut(s) 377
Bsp143I GATC 2 cut(s) 66, 412
BspACI CCGC 4 cut(s) 60, 136, 224, 550
BspCNI CTCAG 2 cut(s) 391, 408
BspFNI CGCG 1 cut(s) 552
BspLI GGNNCC 3 cut(s) 13, 292, 310
BspPI GGATC 1 cut(s) 74
BspT104I TTCGAA 1 cut(s) 377
BspT107I GGYRCC 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 2 cut(s) 66, 412
Bst6I CTCTTC 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 47
BstDEI CTNAG 7 cut(s) 139, 318, 330, 336, 399, 416, 450
BstF5I GGATG 1 cut(s) 463
BstFNI CGCG 1 cut(s) 552
BstKTI GATC 2 cut(s) 69, 415
BstMBI GATC 2 cut(s) 66, 412
BstMWI GCNNNNNNNGC 2 cut(s) 51, 221
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 1 cut(s) 276
BtsCI GGATG 1 cut(s) 463
Cac8I GCNNGC 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 547
Csp6I GTAC 2 cut(s) 283, 445
CviJI RGCY 8 cut(s) 59, 174, 180, 317, 329, 335, 393, 539
CviKI_1 RGCY 8 cut(s) 59, 174, 180, 317, 329, 335, 393, 539
CviQI GTAC 2 cut(s) 283, 445
DdeI CTNAG 7 cut(s) 139, 318, 330, 336, 399, 416, 450
DpnI GATC 2 cut(s) 68, 414
DpnII GATC 2 cut(s) 66, 412
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 547
FaiI YATR 5 cut(s) 56, 71, 89, 314, 521
Fnu4HI GCNGC 2 cut(s) 60, 265
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 2 cut(s) 60, 265
GluI GCNGC 2 cut(s) 60, 265
GsaI CCCAGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 160
HapII CCGG 2 cut(s) 9, 28
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 3 cut(s) 20, 117, 143
HpaII CCGG 2 cut(s) 9, 28
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 3 cut(s) 116, 400, 417
Hpy188III TCNNGA 4 cut(s) 199, 259, 487, 527
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 3 cut(s) 201, 205, 457
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 4 cut(s) 54, 152, 516, 564
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 221
HpyF3I CTNAG 7 cut(s) 139, 318, 330, 336, 399, 416, 450
HpySE526I ACGT 1 cut(s) 480
Kzo9I GATC 2 cut(s) 66, 412
LmnI GCTCC 2 cut(s) 179, 185
LpnPI CCDG 6 cut(s) 22, 25, 41, 48, 190, 408
Lsp1109I GCAGC 1 cut(s) 276
MaeII ACGT 1 cut(s) 480
MalI GATC 2 cut(s) 68, 414
MboI GATC 2 cut(s) 66, 412
MboII GAAGA 4 cut(s) 29, 177, 502, 505
MluCI AATT 1 cut(s) 427
MlyI GAGTC 2 cut(s) 126, 137
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 6 cut(s) 122, 193, 289, 298, 342, 411
MseI TTAA 3 cut(s) 354, 534, 557
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 2 cut(s) 9, 28
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 2 cut(s) 51, 221
NdeII GATC 2 cut(s) 66, 412
NlaIV GGNNCC 3 cut(s) 13, 292, 310
NspV TTCGAA 1 cut(s) 377
PcsI WCGNNNNNNNCGW 2 cut(s) 31, 374
PfeI GAWTC 1 cut(s) 20
Pfl23II CGTACG 1 cut(s) 444
PkrI GCNGC 2 cut(s) 61, 266
PleI GAGTC 2 cut(s) 125, 137
PpsI GAGTC 2 cut(s) 125, 137
PshBI ATTAAT 1 cut(s) 354
Psp1406I AACGTT 1 cut(s) 480
PspFI CCCAGC 1 cut(s) 62
PspLI CGTACG 1 cut(s) 444
PspN4I GGNNCC 3 cut(s) 13, 292, 310
PspPI GGNCC 1 cut(s) 547
RsaI GTAC 2 cut(s) 284, 446
RsaNI GTAC 2 cut(s) 283, 445
SaqAI TTAA 3 cut(s) 354, 534, 557
SatI GCNGC 2 cut(s) 60, 265
Sau3AI GATC 2 cut(s) 66, 412
Sau96I GGNCC 1 cut(s) 547
SchI GAGTC 2 cut(s) 126, 137
SfuI TTCGAA 1 cut(s) 377
SinI GGWCC 1 cut(s) 547
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 1 cut(s) 427
SsiI CCGC 4 cut(s) 60, 136, 224, 550
TaiI ACGT 1 cut(s) 483
TaqI TCGA 3 cut(s) 258, 377, 389
TasI AATT 1 cut(s) 427
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 3 cut(s) 354, 534, 557
Tru9I TTAA 3 cut(s) 354, 534, 557
TseI GCWGC 1 cut(s) 264
TspDTI ATGAA 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 547
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.