Rorug01G0411800

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017369
Physical Location & Seq
Forward (+)
51682942 .. 51683467
526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0411800.1

Sequence Viewer

Length: 471 bp
ATGGCGTCGTCGGTCATGATCTTTGTGCTCTCATTTCCGGCTAAGCGTACTCTCTCTCTCTCTTCCATTTTCGATTTCCCAGCGATTCTCGATCAGGTCCATCTTTCCTGGTCTGAATTCGACCACGACGACTCCGAAGCAGTCGGCAGCGGTGGAGCTGGCGTCGTCTCATCCAAAAACAAAATGGAAGACTCGCCGGAAATACTACGAAACTCGCTCCAAAACTCCGGCATTCGGGTCCCCAACGACGTGTCGTCTGTCCAAAACCTCACGCCGGCCACTTTAGTGTCAATCTACGGCCAGCCCCTCAGCCTCATCTCCGAAACGTCGTCGTTTCTGACCTCACTTCCCGATTCCTCCATCACCGACCAGTTCAATGTCTGTATGGACATGGCTTCCGGGATCAACAGCCTCGGCTACCCAGGCGACGTGAGCTTCCACAAGAAGTATGCGAAATCACGTAACAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

156

Amino Acids

16.84

Weight (kDa)

4.99

Isoelectric Point (pI)

60.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC22_N PF21674 62 - 148 6.3e-17 CCDC22 protein N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30550
malus_domestica MD01G1210900.v1.1 MD07G1281400.v1.1
prunus_persica Prupe.2G303200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0379391
rosa_laevigata RLG00000026403
rosa_multiflora Rmu_sc0000556.1_g000001
rosa_roxburghii Rroxscaffold_4G00280200 Rroxscaffold_5G00373480
rosa_rugosa Rorug01G0411800
rosa_samantha Rh1AG434300 Rh1BG392100
rosa_wichuraiana Rw1G037960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 150
AclWI GGATC 1 cut(s) 410
AcoI YGGCCR 2 cut(s) 276, 298
AcsI RAATTY 1 cut(s) 116
AcyI GRCGYC 2 cut(s) 5, 162
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 2 cut(s) 234, 274
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 1 cut(s) 376
AhdI GACNNNNNGTC 1 cut(s) 253
AjiI CACGTC 2 cut(s) 250, 430
AjnI CCWGG 2 cut(s) 107, 421
AleI CACNNNNGTG 1 cut(s) 284
AluBI AGCT 2 cut(s) 158, 435
AluI AGCT 2 cut(s) 158, 435
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 410
AoxI GGCC 2 cut(s) 276, 298
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 97, 238
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 1 cut(s) 355
AvaII GGWCC 2 cut(s) 97, 238
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 30
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 1 cut(s) 159
BccI CCATC 2 cut(s) 108, 368
BceAI ACGGC 1 cut(s) 313
BciT130I CCWGG 2 cut(s) 109, 423
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 1 cut(s) 172
BisI GCNGC 1 cut(s) 148
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 3 cut(s) 109, 400, 423
Bme18I GGWCC 2 cut(s) 97, 238
BmeRI GACNNNNNGTC 1 cut(s) 253
BmgBI CACGTC 2 cut(s) 250, 430
BmgT120I GGNCC 2 cut(s) 97, 238
BmiI GGNNCC 2 cut(s) 239, 240
BmrFI CCNGG 3 cut(s) 109, 400, 423
BpiI GAAGAC 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 308
Bpu1102I GCTNAGC 1 cut(s) 42
BpuMI CCSGG 1 cut(s) 400
BsaAI YACGTR 1 cut(s) 461
BsaHI GRCGYC 2 cut(s) 5, 162
BsaJI CCNNGG 2 cut(s) 412, 421
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 147, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 274
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 370
BseBI CCWGG 2 cut(s) 109, 423
BseDI CCNNGG 2 cut(s) 412, 421
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 2 cut(s) 234, 274
BseMII CTCAG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 370
BseXI GCAGC 1 cut(s) 159
BseYI CCCAGC 1 cut(s) 79
BshFI GGCC 2 cut(s) 278, 300
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 5 cut(s) 38, 197, 228, 275, 399
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 234, 274
BsmAI GTCTC 1 cut(s) 172
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 231
BsnI GGCC 2 cut(s) 278, 300
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 3 cut(s) 18, 91, 402
Bsp1720I GCTNAGC 1 cut(s) 42
BspACI CCGC 1 cut(s) 150
BspANI GGCC 2 cut(s) 278, 300
BspCNI CTCAG 1 cut(s) 321
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 239, 240
BspPI GGATC 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 1 cut(s) 370
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 2 cut(s) 412, 421
BssMI GATC 3 cut(s) 18, 91, 402
BssNI GRCGYC 2 cut(s) 5, 162
Bst2UI CCWGG 2 cut(s) 109, 423
Bst6I CTCTTC 1 cut(s) 67
BstACI GRCGYC 2 cut(s) 5, 162
BstBAI YACGTR 1 cut(s) 461
BstC8I GCNNGC 3 cut(s) 160, 276, 302
BstDEI CTNAG 2 cut(s) 42, 308
BstF5I GGATG 1 cut(s) 170
BstKTI GATC 3 cut(s) 21, 94, 405
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 3 cut(s) 18, 91, 402
BstMWI GCNNNNNNNGC 2 cut(s) 423, 432
BstNI CCWGG 2 cut(s) 109, 423
BstSCI CCNGG 3 cut(s) 107, 398, 421
BstV1I GCAGC 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 195
BsuRI GGCC 2 cut(s) 278, 300
BtrI CACGTC 2 cut(s) 250, 430
BtsCI GGATG 1 cut(s) 170
Cac8I GCNNGC 3 cut(s) 160, 276, 302
CciI TCATGA 1 cut(s) 15
Cfr10I RCCGGY 1 cut(s) 274
Cfr13I GGNCC 2 cut(s) 97, 238
CseI GACGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 48
CviAII CATG 2 cut(s) 16, 391
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 2 cut(s) 42, 308
DpnI GATC 3 cut(s) 20, 93, 404
DpnII GATC 3 cut(s) 18, 91, 402
DriI GACNNNNNGTC 1 cut(s) 253
EaeI YGGCCR 2 cut(s) 276, 298
Eam1104I CTCTTC 1 cut(s) 67
Eam1105I GACNNNNNGTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 67
Eco47I GGWCC 2 cut(s) 97, 238
EcoO109I RGGNCCY 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 2 cut(s) 107, 421
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 2 cut(s) 19, 394
FaiI YATR 4 cut(s) 17, 386, 392, 450
FaqI GGGAC 1 cut(s) 224
FatI CATG 2 cut(s) 15, 390
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 148
GsaI CCCAGC 1 cut(s) 83
HaeIII GGCC 2 cut(s) 278, 300
HapII CCGG 5 cut(s) 38, 197, 228, 275, 399
HgaI GACGC 1 cut(s) 151
Hin1I GRCGYC 2 cut(s) 5, 162
Hin1II CATG 2 cut(s) 19, 394
HinfI GANTC 4 cut(s) 85, 131, 191, 353
HpaII CCGG 5 cut(s) 38, 197, 228, 275, 399
HphI GGTGA 1 cut(s) 355
Hpy188I TCNGA 4 cut(s) 115, 136, 322, 339
Hpy188III TCNNGA 3 cut(s) 16, 89, 350
Hpy99I CGWCG 8 cut(s) 10, 13, 131, 167, 251, 331, 334, 431
HpyCH4IV ACGT 4 cut(s) 249, 326, 429, 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 423, 432
HpyF3I CTNAG 2 cut(s) 42, 308
HpySE526I ACGT 4 cut(s) 249, 326, 429, 460
Hsp92I GRCGYC 2 cut(s) 5, 162
Hsp92II CATG 2 cut(s) 19, 394
KflI GGGWCCC 1 cut(s) 238
KroI GCCGGC 1 cut(s) 274
KroNI GCCGGC 1 cut(s) 276
Kzo9I GATC 3 cut(s) 18, 91, 402
LmnI GCTCC 2 cut(s) 155, 222
Lsp1109I GCAGC 1 cut(s) 159
MaeII ACGT 4 cut(s) 249, 326, 429, 460
MaeIII GTNAC 1 cut(s) 461
MalI GATC 3 cut(s) 20, 93, 404
MboI GATC 3 cut(s) 18, 91, 402
MboII GAAGA 2 cut(s) 54, 200
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 1 cut(s) 116
MlyI GAGTC 2 cut(s) 125, 185
MnlI CCTC 6 cut(s) 278, 317, 323, 352, 367, 422
MroNI GCCGGC 1 cut(s) 274
MslI CAYNNNNRTG 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 5 cut(s) 38, 197, 228, 275, 399
MspR9I CCNGG 3 cut(s) 109, 400, 423
Mva1269I GAATGC 1 cut(s) 231
MvaI CCWGG 2 cut(s) 109, 423
MwoI GCNNNNNNNGC 2 cut(s) 423, 432
NaeI GCCGGC 1 cut(s) 276
NciI CCSGG 1 cut(s) 400
NdeII GATC 3 cut(s) 18, 91, 402
NgoMIV GCCGGC 1 cut(s) 274
NlaIII CATG 2 cut(s) 19, 394
NlaIV GGNNCC 2 cut(s) 239, 240
NmeAIII GCCGAG 1 cut(s) 393
OliI CACNNNNGTG 1 cut(s) 284
PagI TCATGA 1 cut(s) 15
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 132
PctI GAATGC 1 cut(s) 231
PdiI GCCGGC 1 cut(s) 276
PfeI GAWTC 2 cut(s) 85, 353
PfoI TCCNGGA 1 cut(s) 398
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 2 cut(s) 125, 185
PpsI GAGTC 2 cut(s) 125, 185
Ppu21I YACGTR 1 cut(s) 461
PpuMI RGGWCCY 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 2 cut(s) 107, 421
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 2 cut(s) 107, 421
PspN4I GGNNCC 2 cut(s) 239, 240
PspPI GGNCC 2 cut(s) 97, 238
PspPPI RGGWCCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
RseI CAYNNNNRTG 1 cut(s) 284
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 3 cut(s) 18, 91, 402
Sau96I GGNCC 2 cut(s) 97, 238
SchI GAGTC 2 cut(s) 125, 185
ScrFI CCNGG 3 cut(s) 109, 400, 423
SduI GDGCHC 1 cut(s) 30
SetI ASST 9 cut(s) 99, 160, 252, 270, 329, 344, 432, 437, 463
SinI GGWCC 2 cut(s) 97, 238
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 1 cut(s) 116
SsiI CCGC 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 107, 398, 421
TaiI ACGT 4 cut(s) 252, 329, 432, 463
TaqI TCGA 3 cut(s) 72, 90, 120
TasI AATT 1 cut(s) 116
TfiI GAWTC 2 cut(s) 85, 353
TseI GCWGC 1 cut(s) 147
VpaK11BI GGWCC 2 cut(s) 97, 238
XapI RAATTY 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.