MD01G1210900.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0017369
Physical Location & Seq
Forward (+)
30461128 .. 30461700
573 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1210900.v1.1.491

Sequence Viewer

Length: 573 bp
ATGACCGGAACCGACGATTCGCACCGAAAGCGAAATAGGTGCTTGCTTTGCATAGCCGCCGGGATCATAGTCCAAACCGTTATCATAGTCCTCTTTGTGGTTTTCGTCCTCCGAGTCAAAACTCCCAAAGTCCGTTTAGACTCGGTTGCAATCAACAGTAACACACTCGTGATAAACTCCAGCTCCTCCTCTCCTTCCTTCAAAGTTCAATTCACCACCGTCGTTGCGGTCAAAAACAACAACTTTGGACACTACAAGTTCGAGAGCAGCAAGGCAACTTTCTCGTACGAAGGCACCGAAGTCGGCGAGGGAACCATAGATAAGGAAAAGGCTAAGGCTAAGAAAACAAAGAGGATTGATGTTTTAGTCTCGTTGAGTTCGAACAAGATTTCGAGCCACTCTCAGTTGAGTAGCGATCTGAGCTCTGGGAATTTGACTTTCACAGCGTACGCTAAGTTGGATGGGAAGGTTCATCTGTTGAACATTATCAAGAAGAAGAAGTCTGCTGACATGAACTGCACCGTAAATCTTGATACTAAGGCCAAAACGGTCCACGTCTTGACTTGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.77

Weight (kDa)

9.83

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 75 - 174 6.8e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30550
malus_domestica MD01G1210900.v1.1 MD07G1281400.v1.1
prunus_persica Prupe.2G303200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0379391
rosa_laevigata RLG00000026403
rosa_multiflora Rmu_sc0000556.1_g000001
rosa_roxburghii Rroxscaffold_4G00280200 Rroxscaffold_5G00373480
rosa_rugosa Rorug01G0411800
rosa_samantha Rh1AG434300 Rh1BG392100
rosa_wichuraiana Rw1G037960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AciI CCGC 2 cut(s) 57, 227
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 1 cut(s) 430
AfaI GTAC 2 cut(s) 287, 449
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 3 cut(s) 202, 209, 481
AjiI CACGTC 1 cut(s) 556
AleI CACNNNNGTG 1 cut(s) 167
AluBI AGCT 2 cut(s) 183, 423
AluI AGCT 2 cut(s) 183, 423
Alw21I GWGCWC 1 cut(s) 425
Alw26I GTCTC 1 cut(s) 373
AlwI GGATC 1 cut(s) 71
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 1 cut(s) 267
ApoI RAATTY 1 cut(s) 430
AspS9I GGNCC 1 cut(s) 550
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 205
AsuII TTCGAA 1 cut(s) 380
AvaII GGWCC 1 cut(s) 550
BanI GGYRCC 1 cut(s) 293
BanII GRGCYC 1 cut(s) 425
BauI CACGAG 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 425
BbvI GCAGC 1 cut(s) 279
BccI CCATC 1 cut(s) 455
BcgI CGANNNNNNTGC 6 cut(s) 21, 55, 264, 283, 298, 317
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 373
BisI GCNGC 2 cut(s) 57, 268
BlsI GCNGC 2 cut(s) 58, 269
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 550
BmgBI CACGTC 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 550
BmiI GGNNCC 3 cut(s) 10, 295, 313
BmrFI CCNGG 1 cut(s) 61
BplI GAGNNNNNCTC 2 cut(s) 385, 417
BpmI CTGGAG 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 333
Bpu14I TTCGAA 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 61
BsaWI WCCGGW 1 cut(s) 5
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 2 cut(s) 410, 416
BseRI GAGGAG 2 cut(s) 175, 178
BseXI GCAGC 1 cut(s) 279
BsgI GTGCAG 1 cut(s) 502
BshFI GGCC 1 cut(s) 542
BshNI GGYRCC 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 425
BsiSI CCGG 2 cut(s) 6, 60
BsiWI CGTACG 2 cut(s) 285, 447
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 373
BsnI GGCC 1 cut(s) 542
Bsp119I TTCGAA 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 425
Bsp143I GATC 2 cut(s) 63, 415
BspACI CCGC 2 cut(s) 57, 227
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 2 cut(s) 411, 415
BspLI GGNNCC 3 cut(s) 10, 295, 313
BspPI GGATC 1 cut(s) 71
BspT104I TTCGAA 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 293
BssMI GATC 2 cut(s) 63, 415
BssSI CACGAG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 167
Bst4CI ACNGT 5 cut(s) 79, 158, 220, 523, 550
BstBI TTCGAA 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 6 cut(s) 333, 339, 402, 419, 453, 537
BstF5I GGATG 1 cut(s) 466
BstKTI GATC 2 cut(s) 66, 418
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 2 cut(s) 63, 415
BstMWI GCNNNNNNNGC 3 cut(s) 28, 48, 420
BstSCI CCNGG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 279
BsuRI GGCC 1 cut(s) 542
BtrI CACGTC 1 cut(s) 556
BtsCI GGATG 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 550
Csp6I GTAC 2 cut(s) 286, 448
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 1 cut(s) 511
CviJI RGCY 7 cut(s) 56, 183, 332, 338, 396, 423, 542
CviKI_1 RGCY 7 cut(s) 56, 183, 332, 338, 396, 423, 542
CviQI GTAC 2 cut(s) 286, 448
DdeI CTNAG 6 cut(s) 333, 339, 402, 419, 453, 537
DpnI GATC 2 cut(s) 65, 417
DpnII GATC 2 cut(s) 63, 415
Ecl136II GAGCTC 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 550
Eco53kI GAGCTC 1 cut(s) 423
EcoICRI GAGCTC 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 425
FaeI CATG 1 cut(s) 514
FaiI YATR 5 cut(s) 53, 68, 86, 317, 512
FatI CATG 1 cut(s) 510
Fnu4HI GCNGC 2 cut(s) 57, 268
FokI GGATG 1 cut(s) 473
FriOI GRGCYC 1 cut(s) 425
Fsp4HI GCNGC 2 cut(s) 57, 268
GluI GCNGC 2 cut(s) 57, 268
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 1 cut(s) 542
HapII CCGG 2 cut(s) 6, 60
Hin1II CATG 1 cut(s) 514
HinfI GANTC 3 cut(s) 17, 114, 140
HpaII CCGG 2 cut(s) 6, 60
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 2 cut(s) 113, 420
Hpy188III TCNNGA 5 cut(s) 169, 262, 490, 530, 559
Hpy8I GTNNAC 1 cut(s) 553
Hpy99I CGWCG 2 cut(s) 17, 224
HpyAV CCTTC 4 cut(s) 204, 208, 284, 460
HpyCH4III ACNGT 5 cut(s) 79, 158, 220, 523, 550
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 4 cut(s) 51, 149, 519, 567
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 48, 420
HpyF3I CTNAG 6 cut(s) 333, 339, 402, 419, 453, 537
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 1 cut(s) 514
Kzo9I GATC 2 cut(s) 63, 415
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 4 cut(s) 19, 73, 193, 411
Lsp1109I GCAGC 1 cut(s) 279
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 1 cut(s) 158
MalI GATC 2 cut(s) 65, 417
MboI GATC 2 cut(s) 63, 415
MboII GAAGA 2 cut(s) 505, 508
MhlI GDGCHC 1 cut(s) 425
MluCI AATT 2 cut(s) 209, 430
MlyI GAGTC 2 cut(s) 123, 134
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 6 cut(s) 101, 119, 196, 199, 301, 345
MslI CAYNNNNRTG 1 cut(s) 167
MspI CCGG 2 cut(s) 6, 60
MspR9I CCNGG 1 cut(s) 61
MwoI GCNNNNNNNGC 3 cut(s) 28, 48, 420
NciI CCSGG 1 cut(s) 61
NdeII GATC 2 cut(s) 63, 415
NlaIII CATG 1 cut(s) 514
NlaIV GGNNCC 3 cut(s) 10, 295, 313
NspV TTCGAA 1 cut(s) 380
OliI CACNNNNGTG 1 cut(s) 167
PcsI WCGNNNNNNNCGW 2 cut(s) 294, 377
PfeI GAWTC 1 cut(s) 17
Pfl23II CGTACG 2 cut(s) 285, 447
PkrI GCNGC 2 cut(s) 58, 269
PleI GAGTC 2 cut(s) 122, 134
PpsI GAGTC 2 cut(s) 122, 134
Psp124BI GAGCTC 1 cut(s) 425
PspLI CGTACG 2 cut(s) 285, 447
PspN4I GGNNCC 3 cut(s) 10, 295, 313
PspPI GGNCC 1 cut(s) 550
RsaI GTAC 2 cut(s) 287, 449
RsaNI GTAC 2 cut(s) 286, 448
RseI CAYNNNNRTG 1 cut(s) 167
SacI GAGCTC 1 cut(s) 425
SatI GCNGC 2 cut(s) 57, 268
Sau3AI GATC 2 cut(s) 63, 415
Sau96I GGNCC 1 cut(s) 550
SchI GAGTC 2 cut(s) 123, 134
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 1 cut(s) 425
SetI ASST 5 cut(s) 41, 185, 425, 471, 558
SfuI TTCGAA 1 cut(s) 380
SinI GGWCC 1 cut(s) 550
SmiMI CAYNNNNRTG 1 cut(s) 167
Sse9I AATT 2 cut(s) 209, 430
SsiI CCGC 2 cut(s) 57, 227
SstI GAGCTC 1 cut(s) 425
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 5 cut(s) 79, 158, 220, 523, 550
TaiI ACGT 1 cut(s) 558
TaqI TCGA 3 cut(s) 261, 380, 392
TasI AATT 2 cut(s) 209, 430
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 17
TseI GCWGC 1 cut(s) 267
TspDTI ATGAA 2 cut(s) 461, 527
TspGWI ACGGA 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 550
XapI RAATTY 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.