Prupe.2G303200_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0017369
Physical Location & Seq
Forward (+)
29005218 .. 29006083
866 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G303200.1

Sequence Viewer

Length: 570 bp
ATGACAAGGGGCAACGAAGATTCGCGGAGGAAGAGAAACAGATGCTTCCTCTACATCGCTGCCGGGATCATATTACAAACCATAATCATAGTTCTGTTTGTGGTTTTCGTCATGCGTATCAAAACTCCCAAAGTCCGTTTAGACTCGGTTGCTGTCGACTCACTCACCGCCAACTCTAGCCCGTCCTCTCCTTCCTTTAAGGTTCAAATCAATGCTTTGGTTACCGTCAAGAACAAAAACTTTGGGCACTACAAGTTCGAGGGCAGCAAGGTCACTTTCTCGTACAAAGGCACTGCGGTCGGGGAGGGCACTATTGCCAAGGCTAAAGCCAAAGCTAAAAGGACAAAGAAGATTAACGTGACGGTGTCGTTGAACTCGAACAAGGTTTCAAGCCACTCTCAGTTGAGTAGCGATCTGAGTTCTGGGAATTTGACTTTGACTGCCTACGCCAAGCTGGATGGGAAGGTGCATCTCTTCAAGGTCATCAAGAAGAAGAAGTCGGCTAACTTGAACTGCACCGTACATGTTGATACTAAGGCCAAAGTTGTCCACGTTTTGACTTGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

190

Amino Acids

20.7

Weight (kDa)

10.36

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30550
malus_domestica MD01G1210900.v1.1 MD07G1281400.v1.1
prunus_persica Prupe.2G303200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0379391
rosa_laevigata RLG00000026403
rosa_multiflora Rmu_sc0000556.1_g000001
rosa_roxburghii Rroxscaffold_4G00280200 Rroxscaffold_5G00373480
rosa_rugosa Rorug01G0411800
rosa_samantha Rh1AG434300 Rh1BG392100
rosa_wichuraiana Rw1G037960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 156
AccII CGCG 1 cut(s) 25
AciI CCGC 3 cut(s) 25, 168, 296
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 427
AfaI GTAC 2 cut(s) 284, 522
AflIII ACRYGT 1 cut(s) 523
AgsI TTSAA 5 cut(s) 206, 373, 390, 478, 511
AluBI AGCT 2 cut(s) 335, 454
AluI AGCT 2 cut(s) 335, 454
AlwI GGATC 1 cut(s) 74
AoxI GGCC 1 cut(s) 537
ApeKI GCWGC 2 cut(s) 59, 264
ApoI RAATTY 1 cut(s) 427
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 157
BaeGI GKGCMC 2 cut(s) 249, 311
BbvI GCAGC 2 cut(s) 46, 276
BccI CCATC 1 cut(s) 452
BcgI CGANNNNNNTGC 2 cut(s) 280, 314
BcnI CCSGG 1 cut(s) 64
BfaI CTAG 1 cut(s) 177
BisI GCNGC 2 cut(s) 60, 265
BlsI GCNGC 2 cut(s) 61, 266
Bme1390I CCNGG 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 64
BmsI GCATC 2 cut(s) 32, 478
BpuMI CCSGG 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 1 cut(s) 463
BseMII CTCAG 2 cut(s) 407, 413
BseSI GKGCMC 2 cut(s) 249, 311
BseXI GCAGC 2 cut(s) 46, 276
BsgI GTGCAG 1 cut(s) 499
Bsh1236I CGCG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 1 cut(s) 539
BsiEI CGRYCG 1 cut(s) 300
BsiSI CCGG 1 cut(s) 63
BsnI GGCC 1 cut(s) 539
Bsp1286I GDGCHC 2 cut(s) 249, 311
Bsp143I GATC 2 cut(s) 66, 412
BspACI CCGC 3 cut(s) 25, 168, 296
BspANI GGCC 1 cut(s) 539
BspCNI CTCAG 2 cut(s) 408, 412
BspFNI CGCG 1 cut(s) 25
BspPI GGATC 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 2 cut(s) 66, 412
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 3 cut(s) 226, 364, 520
Bst6I CTCTTC 2 cut(s) 26, 479
BstDEI CTNAG 3 cut(s) 399, 416, 534
BstEII GGTNACC 1 cut(s) 220
BstF5I GGATG 1 cut(s) 463
BstFNI CGCG 1 cut(s) 25
BstKTI GATC 2 cut(s) 69, 415
BstMBI GATC 2 cut(s) 66, 412
BstMCI CGRYCG 1 cut(s) 300
BstNSI RCATGY 1 cut(s) 527
BstPI GGTNACC 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 62
BstSLI GKGCMC 2 cut(s) 249, 311
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 46, 276
BsuRI GGCC 1 cut(s) 539
BtgZI GCGATG 1 cut(s) 40
BtsCI GGATG 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 291
Csp6I GTAC 2 cut(s) 283, 521
CviAII CATG 2 cut(s) 112, 524
CviJI RGCY 8 cut(s) 180, 323, 329, 335, 393, 454, 503, 539
CviKI_1 RGCY 8 cut(s) 180, 323, 329, 335, 393, 454, 503, 539
CviQI GTAC 2 cut(s) 283, 521
DdeI CTNAG 3 cut(s) 399, 416, 534
DpnI GATC 2 cut(s) 68, 414
DpnII GATC 2 cut(s) 66, 412
Eam1104I CTCTTC 2 cut(s) 26, 479
EarI CTCTTC 2 cut(s) 26, 479
Eco130I CCWWGG 1 cut(s) 318
Eco91I GGTNACC 1 cut(s) 220
EcoO65I GGTNACC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 2 cut(s) 115, 527
FaiI YATR 5 cut(s) 71, 83, 89, 113, 525
FatI CATG 2 cut(s) 111, 523
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 60, 265
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 2 cut(s) 60, 265
FspBI CTAG 1 cut(s) 177
GluI GCNGC 2 cut(s) 60, 265
HaeIII GGCC 1 cut(s) 539
HapII CCGG 1 cut(s) 63
Hin1II CATG 2 cut(s) 115, 527
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 3 cut(s) 20, 143, 158
HpaII CCGG 1 cut(s) 63
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 157, 550
Hpy188I TCNGA 1 cut(s) 417
Hpy188III TCNNGA 2 cut(s) 229, 487
Hpy8I GTNNAC 2 cut(s) 157, 550
HpyAV CCTTC 2 cut(s) 201, 457
HpyCH4III ACNGT 3 cut(s) 226, 364, 520
HpyCH4IV ACGT 2 cut(s) 357, 552
HpyCH4V TGCA 3 cut(s) 469, 516, 564
HpyF3I CTNAG 3 cut(s) 399, 416, 534
HpySE526I ACGT 2 cut(s) 357, 552
Hsp92II CATG 2 cut(s) 115, 527
Kzo9I GATC 2 cut(s) 66, 412
LpnPI CCDG 3 cut(s) 76, 408, 440
Lsp1109I GCAGC 2 cut(s) 46, 276
LweI GCATC 2 cut(s) 32, 478
MaeI CTAG 1 cut(s) 177
MaeII ACGT 2 cut(s) 357, 552
MaeIII GTNAC 3 cut(s) 220, 271, 358
MalI GATC 2 cut(s) 68, 414
MboI GATC 2 cut(s) 66, 412
MboII GAAGA 6 cut(s) 29, 43, 361, 466, 502, 505
MhlI GDGCHC 2 cut(s) 249, 311
MluCI AATT 1 cut(s) 427
MlyI GAGTC 2 cut(s) 137, 152
MnlI CCTC 5 cut(s) 21, 59, 196, 253, 298
MseI TTAA 2 cut(s) 198, 354
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 64
MvnI CGCG 1 cut(s) 25
NciI CCSGG 1 cut(s) 64
NdeII GATC 2 cut(s) 66, 412
NlaIII CATG 2 cut(s) 115, 527
NmuCI GTSAC 2 cut(s) 271, 358
NspI RCATGY 1 cut(s) 527
PciI ACATGT 1 cut(s) 523
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PfeI GAWTC 1 cut(s) 20
PflFI GACNNNGTC 1 cut(s) 364
PkrI GCNGC 2 cut(s) 61, 266
PleI GAGTC 2 cut(s) 137, 152
PpsI GAGTC 2 cut(s) 137, 152
PscI ACATGT 1 cut(s) 523
PspEI GGTNACC 1 cut(s) 220
PsyI GACNNNGTC 1 cut(s) 364
RsaI GTAC 2 cut(s) 284, 522
RsaNI GTAC 2 cut(s) 283, 521
SalI GTCGAC 1 cut(s) 155
SaqAI TTAA 2 cut(s) 198, 354
SatI GCNGC 2 cut(s) 60, 265
Sau3AI GATC 2 cut(s) 66, 412
SchI GAGTC 2 cut(s) 137, 152
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 2 cut(s) 249, 311
SetI ASST 9 cut(s) 204, 273, 337, 360, 387, 456, 468, 483, 555
SfaNI GCATC 2 cut(s) 32, 478
Sse9I AATT 1 cut(s) 427
SsiI CCGC 3 cut(s) 25, 168, 296
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 3 cut(s) 226, 364, 520
TaiI ACGT 2 cut(s) 360, 555
TaqI TCGA 3 cut(s) 156, 258, 377
TasI AATT 1 cut(s) 427
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 198, 354
Tru9I TTAA 2 cut(s) 198, 354
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 2 cut(s) 271, 358
TseI GCWGC 2 cut(s) 59, 264
Tsp45I GTSAC 2 cut(s) 271, 358
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 1 cut(s) 298
Tth111I GACNNNGTC 1 cut(s) 364
XapI RAATTY 1 cut(s) 427
XceI RCATGY 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.