FvH4_7g31560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016150
Physical Location & Seq
Forward (+)
22789715 .. 22791317
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31560.t1

Sequence Viewer

Length: 387 bp
ATGGCAGGCCAAGCTGCAAAGTCGGTGGCAAAGGCAATTGGGGAGTACCAGTACCCATGGCGCGAGAAGTTGGTAAAATACAAGACTGAGCTATCCAAGGGTGTGTGGGGTTATTGGCATCTAGGGGCCTGGAAGGCATCTGGAATTAGTGCTCGTCATCGAGCTAGACTTCGGAAGGAAGTCCTACTTGCAGGACAGGATTGGCCATATGATCCGGAGAGGAAAGAAATGAGGACCAAGAGGAAGGGGCACAAAGTTGATAGGATAGCTGCCGAGAAACGTGAAAACACTGCCAGGTTGATGGAGAAGATGCCCGACATGTTGCTTCAATACAAGAAGCGCAGATGGGAGAAGAAGATGAAGGAAGAAGACAAGGGCAAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

15.21

Weight (kDa)

10.15

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22000
fragaria_vesca FvH4_7g31560
malus_domestica MD07G1288300.v1.1
prunus_persica Prupe.2G309800_v2.0.a1 Prupe.2G309800_v2.0.a1 Prupe.2G309800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0380551
rosa_laevigata RLG00000026285
rosa_roxburghii Rroxscaffold_4G00279200
rosa_rugosa Rorug01G0422500
rosa_samantha Rh1AG447000 Rh1BG402300 Rh1CG416500 Rh1DG432500
rosa_wichuraiana Rw1G038880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 63
AccIII TCCGGA 1 cut(s) 214
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 203
AfaI GTAC 2 cut(s) 47, 53
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 1 cut(s) 329
AjnI CCWGG 2 cut(s) 128, 293
AluBI AGCT 4 cut(s) 14, 91, 164, 269
AluI AGCT 4 cut(s) 14, 91, 164, 269
Alw21I GWGCWC 1 cut(s) 154
AlwI GGATC 1 cut(s) 206
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 3 cut(s) 7, 126, 203
ApeKI GCWGC 2 cut(s) 14, 269
AspLEI GCGC 2 cut(s) 63, 342
AspS9I GGNCC 2 cut(s) 126, 234
AvaII GGWCC 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 252
BalI TGGCCA 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 256
BccI CCATC 2 cut(s) 295, 339
BciT130I CCWGG 2 cut(s) 130, 295
BfaI CTAG 2 cut(s) 122, 165
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 2 cut(s) 15, 270
BlsI GCNGC 2 cut(s) 16, 271
Bme1390I CCNGG 2 cut(s) 130, 295
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 2 cut(s) 126, 234
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 2 cut(s) 130, 295
BmsI GCATC 3 cut(s) 127, 146, 300
BpiI GAAGAC 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 56, 96
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bse1I ACTGG 1 cut(s) 49
BseAI TCCGGA 1 cut(s) 214
BseBI CCWGG 2 cut(s) 130, 295
BseDI CCNNGG 2 cut(s) 56, 96
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 252
BseXI GCAGC 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 3 cut(s) 9, 128, 205
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 215
BsnI GGCC 3 cut(s) 9, 128, 205
Bsp1286I GDGCHC 2 cut(s) 154, 252
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 1 cut(s) 211
Bsp19I CCATGG 1 cut(s) 56
BspANI GGCC 3 cut(s) 9, 128, 205
BspCNI CTCAG 1 cut(s) 79
BspEI TCCGGA 1 cut(s) 214
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 56, 96
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 2 cut(s) 56, 96
Bst2UI CCWGG 2 cut(s) 130, 295
BstC8I GCNNGC 2 cut(s) 7, 380
BstDEI CTNAG 1 cut(s) 87
BstDSI CCRYGG 1 cut(s) 56
BstFNI CGCG 1 cut(s) 63
BstHHI GCGC 2 cut(s) 63, 342
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 11, 134
BstNI CCWGG 2 cut(s) 130, 295
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 2 cut(s) 128, 293
BstSLI GKGCMC 1 cut(s) 252
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 375
BstXI CCANNNNNNTGG 1 cut(s) 301
BsuRI GGCC 3 cut(s) 9, 128, 205
BtgI CCRYGG 1 cut(s) 56
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 7, 380
CfoI GCGC 2 cut(s) 63, 342
Cfr13I GGNCC 2 cut(s) 126, 234
Csp6I GTAC 2 cut(s) 46, 52
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 2 cut(s) 57, 319
CviJI RGCY 8 cut(s) 9, 14, 91, 128, 164, 205, 269, 382
CviKI_1 RGCY 8 cut(s) 9, 14, 91, 128, 164, 205, 269, 382
CviQI GTAC 2 cut(s) 46, 52
DdeI CTNAG 1 cut(s) 87
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 203
Eco130I CCWWGG 2 cut(s) 56, 96
Eco47I GGWCC 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 126
EcoRII CCWGG 2 cut(s) 128, 293
EcoT14I CCWWGG 2 cut(s) 56, 96
ErhI CCWWGG 2 cut(s) 56, 96
FaeI CATG 2 cut(s) 60, 322
FaiI YATR 4 cut(s) 58, 208, 210, 320
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FatI CATG 2 cut(s) 56, 318
FauNDI CATATG 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 15, 270
Fsp4HI GCNGC 2 cut(s) 15, 270
FspBI CTAG 2 cut(s) 122, 165
GlaI GCGC 2 cut(s) 62, 341
GluI GCNGC 2 cut(s) 15, 270
HaeIII GGCC 3 cut(s) 9, 128, 205
HapII CCGG 1 cut(s) 215
HhaI GCGC 2 cut(s) 63, 342
Hin1II CATG 2 cut(s) 60, 322
Hin6I GCGC 2 cut(s) 61, 340
HinP1I GCGC 2 cut(s) 61, 340
HpaII CCGG 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 2 cut(s) 141, 215
HpyAV CCTTC 4 cut(s) 127, 169, 238, 355
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 17, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 134
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 2 cut(s) 60, 322
HspAI GCGC 2 cut(s) 61, 340
Kpn2I TCCGGA 1 cut(s) 214
Kzo9I GATC 1 cut(s) 211
LpnPI CCDG 9 cut(s) 62, 115, 126, 142, 177, 182, 228, 280, 307
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 3 cut(s) 127, 146, 300
MaeI CTAG 2 cut(s) 122, 165
MaeII ACGT 1 cut(s) 280
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 5 cut(s) 319, 364, 367, 377, 380
MfeI CAATTG 1 cut(s) 36
MhlI GDGCHC 2 cut(s) 154, 252
MlsI TGGCCA 1 cut(s) 205
MluCI AATT 2 cut(s) 36, 144
MluNI TGGCCA 1 cut(s) 205
MnlI CCTC 3 cut(s) 213, 225, 234
Mox20I TGGCCA 1 cut(s) 205
MroI TCCGGA 1 cut(s) 214
MscI TGGCCA 1 cut(s) 205
Msp20I TGGCCA 1 cut(s) 205
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 2 cut(s) 130, 295
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 2 cut(s) 130, 295
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 2 cut(s) 11, 134
NcoI CCATGG 1 cut(s) 56
NdeI CATATG 1 cut(s) 208
NdeII GATC 1 cut(s) 211
NlaIII CATG 2 cut(s) 60, 322
NlaIV GGNNCC 1 cut(s) 127
NmeAIII GCCGAG 1 cut(s) 298
NspI RCATGY 1 cut(s) 322
PciI ACATGT 1 cut(s) 318
PkrI GCNGC 2 cut(s) 16, 271
PscI ACATGT 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 128, 293
PspGI CCWGG 2 cut(s) 128, 293
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 2 cut(s) 126, 234
RsaI GTAC 2 cut(s) 47, 53
RsaNI GTAC 2 cut(s) 46, 52
SatI GCNGC 2 cut(s) 15, 270
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 2 cut(s) 126, 234
ScrFI CCNGG 2 cut(s) 130, 295
SduI GDGCHC 2 cut(s) 154, 252
SetI ASST 6 cut(s) 16, 93, 166, 271, 283, 299
SfaNI GCATC 3 cut(s) 127, 146, 300
SinI GGWCC 1 cut(s) 234
Sse9I AATT 2 cut(s) 36, 144
SspMI CTAG 2 cut(s) 122, 165
StyD4I CCNGG 2 cut(s) 128, 293
StyI CCWWGG 2 cut(s) 56, 96
TaiI ACGT 1 cut(s) 283
TaqI TCGA 1 cut(s) 160
TasI AATT 2 cut(s) 36, 144
TscAI CASTG 1 cut(s) 295
TseI GCWGC 2 cut(s) 14, 269
TspDTI ATGAA 1 cut(s) 374
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 234
XceI RCATGY 1 cut(s) 322
XspI CTAG 2 cut(s) 122, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.