Rorug01G0422500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016150
Physical Location & Seq
Reverse (-)
52345537 .. 52345992
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0422500.1

Sequence Viewer

Length: 456 bp
ATGAAGTATACTAAAATTGATTTGAAGGCATTAGCCCTCCAAATTCTTACAAAACTCGGCTGGATTCATCATCCAGATGAAGAAGAAACTGATCAACCACCGGTAGCTAGAAACCGCAGCTTAGACTGGGTGAAGATATTTGTTGTGTTTGGCTCGGCCTCCGCGATTGAAATGGCTCTTCTATCCGCCCAAATCCACTCTCAGCTCCCGGCAATCTTCTGCGTCCTCGGACTCACCATCATAATGTCCTTTACTTGCTTCTTTGTTAGCAATTCCATTCACTTCAACTATCTGATAGTGGCTGATGTGCTCGAGCGAGTTGGCATTTTCTTTGGGGTCACGGCAATCTTCATATGCATCAGTATTCCATTTCCCTTGTGGTTCAAATGTGTCACGTGCTTCATCTATGTGCTCTGTTGGTTTACAATCTTGTTTTGTAATTACTTCCATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.29

Weight (kDa)

6.48

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22000
fragaria_vesca FvH4_7g31560
malus_domestica MD07G1288300.v1.1
prunus_persica Prupe.2G309800_v2.0.a1 Prupe.2G309800_v2.0.a1 Prupe.2G309800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0380551
rosa_laevigata RLG00000026285
rosa_roxburghii Rroxscaffold_4G00279200
rosa_rugosa Rorug01G0422500
rosa_samantha Rh1AG447000 Rh1BG402300 Rh1CG416500 Rh1DG432500
rosa_wichuraiana Rw1G038880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 8
AccII CGCG 1 cut(s) 164
AciI CCGC 3 cut(s) 115, 162, 186
AcsI RAATTY 1 cut(s) 42
AcvI CACGTG 1 cut(s) 396
AgeI ACCGGT 1 cut(s) 100
AgsI TTSAA 4 cut(s) 25, 170, 286, 385
AluBI AGCT 3 cut(s) 107, 120, 205
AluI AGCT 3 cut(s) 107, 120, 205
Alw21I GWGCWC 2 cut(s) 312, 414
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 42
AsiGI ACCGGT 1 cut(s) 100
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 142, 226
AvaI CYCGRG 1 cut(s) 311
BbrPI CACGTG 1 cut(s) 396
Bbv12I GWGCWC 2 cut(s) 312, 414
BbvI GCAGC 1 cut(s) 129
BccI CCATC 1 cut(s) 245
BceAI ACGGC 1 cut(s) 357
BclI TGATCA 1 cut(s) 91
BcnI CCSGG 1 cut(s) 209
BfaI CTAG 1 cut(s) 108
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 311
BmrFI CCNGG 1 cut(s) 209
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 366
BmuI ACTGGG 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 209
BsaAI YACGTR 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 226
BsaWI WCCGGW 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 1 cut(s) 158
BshTI ACCGGT 1 cut(s) 100
BsiHKAI GWGCWC 2 cut(s) 312, 414
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 2 cut(s) 101, 209
BsnI GGCC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 2 cut(s) 312, 414
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 3 cut(s) 115, 162, 186
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 214
BspFNI CGCG 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 1 cut(s) 91
BssNAI GTATAC 1 cut(s) 9
Bst1107I GTATAC 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 396
BstDEI CTNAG 3 cut(s) 121, 201, 453
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 164
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 207
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 129
BstZ17I GTATAC 1 cut(s) 9
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 1 cut(s) 70
Cfr10I RCCGGY 1 cut(s) 100
CseI GACGC 1 cut(s) 211
CspAI ACCGGT 1 cut(s) 100
CviJI RGCY 9 cut(s) 35, 60, 107, 120, 153, 158, 176, 205, 302
CviKI_1 RGCY 9 cut(s) 35, 60, 107, 120, 153, 158, 176, 205, 302
DdeI CTNAG 3 cut(s) 121, 201, 453
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EciI GGCGGA 1 cut(s) 175
Eco72I CACGTG 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 311
EcoT22I ATGCAT 1 cut(s) 359
FaiI YATR 5 cut(s) 9, 242, 353, 355, 408
FauNDI CATATG 1 cut(s) 353
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 118
FspBI CTAG 1 cut(s) 108
GluI GCNGC 1 cut(s) 118
HaeIII GGCC 1 cut(s) 158
HapII CCGG 2 cut(s) 101, 209
HgaI GACGC 1 cut(s) 211
HinfI GANTC 2 cut(s) 64, 231
HpaII CCGG 2 cut(s) 101, 209
HphI GGTGA 2 cut(s) 142, 226
Hpy166II GTNNAC 2 cut(s) 9, 423
Hpy188I TCNGA 2 cut(s) 230, 294
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 2 cut(s) 9, 423
HpyAV CCTTC 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 1 cut(s) 357
HpyF3I CTNAG 3 cut(s) 121, 201, 453
HpySE526I ACGT 1 cut(s) 395
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 1 cut(s) 91
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 210
LpnPI CCDG 5 cut(s) 46, 87, 112, 114, 222
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 1 cut(s) 366
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 2 cut(s) 337, 391
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 6 cut(s) 92, 95, 145, 170, 208, 340
MhlI GDGCHC 2 cut(s) 312, 414
MluCI AATT 4 cut(s) 15, 42, 271, 439
MlyI GAGTC 1 cut(s) 225
MnlI CCTC 3 cut(s) 47, 169, 236
Mph1103I ATGCAT 1 cut(s) 359
MslI CAYNNNNRTG 3 cut(s) 75, 242, 407
MspI CCGG 2 cut(s) 101, 209
MspR9I CCNGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 164
NciI CCSGG 1 cut(s) 209
NdeI CATATG 1 cut(s) 353
NdeII GATC 1 cut(s) 91
NmeAIII GCCGAG 2 cut(s) 36, 134
NmuCI GTSAC 2 cut(s) 337, 391
NsiI ATGCAT 1 cut(s) 359
PaeR7I CTCGAG 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PfeI GAWTC 1 cut(s) 64
PinAI ACCGGT 1 cut(s) 100
PkrI GCNGC 1 cut(s) 119
PleI GAGTC 1 cut(s) 225
PmaCI CACGTG 1 cut(s) 396
PmlI CACGTG 1 cut(s) 396
PpsI GAGTC 1 cut(s) 225
Ppu21I YACGTR 1 cut(s) 396
PspCI CACGTG 1 cut(s) 396
PspXI VCTCGAGB 1 cut(s) 311
RseI CAYNNNNRTG 3 cut(s) 75, 242, 407
SapI GCTCTTC 1 cut(s) 183
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 1 cut(s) 91
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 2 cut(s) 312, 414
SetI ASST 4 cut(s) 109, 122, 207, 398
SfaNI GCATC 1 cut(s) 366
Sfr274I CTCGAG 1 cut(s) 311
SlaI CTCGAG 1 cut(s) 311
SmiMI CAYNNNNRTG 3 cut(s) 75, 242, 407
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 4 cut(s) 15, 42, 271, 439
SsiI CCGC 3 cut(s) 115, 162, 186
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 207
TaiI ACGT 1 cut(s) 398
TaqI TCGA 1 cut(s) 312
TasI AATT 4 cut(s) 15, 42, 271, 439
TfiI GAWTC 1 cut(s) 64
TseFI GTSAC 2 cut(s) 337, 391
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 2 cut(s) 337, 391
TspDTI ATGAA 5 cut(s) 17, 56, 93, 340, 391
XapI RAATTY 1 cut(s) 42
XcmI CCANNNNNNNNNTGG 1 cut(s) 375
XhoI CTCGAG 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.