Prupe.2G309800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016150
Physical Location & Seq
Forward (+)
29341437 .. 29343829
2393 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G309800.3

Sequence Viewer

Length: 387 bp
ATGGCAGGCCAAGCTGCAAAATCTGTGGCAAAGACAATTGGAGGGTACCAGTACCCATGGCGCGAGAAGTTGGCTAAACACAGCTCCGAGCTATCCAAGGGTGTGTGGGGTTACTGGCATCTAGGGGCATGGAAGCCGCTTGGAATCAGTGCTCGTCATCGAGCTAAAATTAGAAGGGAAGTGCTCCTCGCGGGACAGGATTGGCCATATGATCCAGCAAGGAAAGAAATGAGAACCAAGAGGAAAGGGCACAAAGTTGACAGGATAGCTGCAGAGAAACGGGAAAACACTGCCAAGTTGATGGTGAAGATGCCACAAATGTTACTTGATTACAAGAAGCGCGTGTGGGAGAAGAGGATGAAGGAAGAAGAGAAGAACAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

15.03

Weight (kDa)

10.31

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22000
fragaria_vesca FvH4_7g31560
malus_domestica MD07G1288300.v1.1
prunus_persica Prupe.2G309800_v2.0.a1 Prupe.2G309800_v2.0.a1 Prupe.2G309800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0380551
rosa_laevigata RLG00000026285
rosa_roxburghii Rroxscaffold_4G00279200
rosa_rugosa Rorug01G0422500
rosa_samantha Rh1AG447000 Rh1BG402300 Rh1CG416500 Rh1DG432500
rosa_wichuraiana Rw1G038880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 45
AccII CGCG 3 cut(s) 63, 191, 342
AciI CCGC 2 cut(s) 137, 191
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 203
AfaI GTAC 2 cut(s) 47, 53
AluBI AGCT 6 cut(s) 14, 84, 91, 164, 269, 384
AluI AGCT 6 cut(s) 14, 84, 91, 164, 269, 384
Alw21I GWGCWC 2 cut(s) 154, 186
AlwI GGATC 1 cut(s) 206
AoxI GGCC 2 cut(s) 7, 203
ApeKI GCWGC 2 cut(s) 14, 269
Asp718I GGTACC 1 cut(s) 45
AspLEI GCGC 2 cut(s) 63, 342
AsuHPI GGTGA 1 cut(s) 316
BaeGI GKGCMC 1 cut(s) 252
BalI TGGCCA 1 cut(s) 205
BanI GGYRCC 1 cut(s) 45
Bbv12I GWGCWC 2 cut(s) 154, 186
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 295
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 3 cut(s) 15, 137, 270
BlsI GCNGC 3 cut(s) 16, 138, 271
BmiI GGNNCC 1 cut(s) 47
BmsI GCATC 2 cut(s) 127, 300
BsaJI CCNNGG 2 cut(s) 56, 96
Bse1I ACTGG 2 cut(s) 49, 119
BseDI CCNNGG 2 cut(s) 56, 96
BseGI GGATG 1 cut(s) 363
BseNI ACTGG 2 cut(s) 49, 119
BseRI GAGGAG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 252
BseXI GCAGC 1 cut(s) 256
Bsh1236I CGCG 3 cut(s) 63, 191, 342
BshFI GGCC 2 cut(s) 9, 205
BshNI GGYRCC 1 cut(s) 45
BsiHKAI GWGCWC 2 cut(s) 154, 186
BslFI GGGAC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 207
BsnI GGCC 2 cut(s) 9, 205
Bsp1286I GDGCHC 3 cut(s) 154, 186, 252
Bsp143I GATC 1 cut(s) 211
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 2 cut(s) 137, 191
BspANI GGCC 2 cut(s) 9, 205
BspFNI CGCG 3 cut(s) 63, 191, 342
BspLI GGNNCC 1 cut(s) 47
BspMAI CTGCAG 1 cut(s) 274
BspPI GGATC 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 45
BsrI ACTGG 2 cut(s) 49, 119
BssECI CCNNGG 2 cut(s) 56, 96
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 2 cut(s) 56, 96
Bst6I CTCTTC 2 cut(s) 347, 363
BstC8I GCNNGC 1 cut(s) 7
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 363
BstFNI CGCG 3 cut(s) 63, 191, 342
BstHHI GCGC 2 cut(s) 63, 342
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 252
BstUI CGCG 3 cut(s) 63, 191, 342
BstV1I GCAGC 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 301
BsuRI GGCC 2 cut(s) 9, 205
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 1 cut(s) 363
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 154, 288
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 2 cut(s) 63, 342
Csp6I GTAC 2 cut(s) 46, 52
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 2 cut(s) 57, 129
CviQI GTAC 2 cut(s) 46, 52
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 203
Eam1104I CTCTTC 2 cut(s) 347, 363
EarI CTCTTC 2 cut(s) 347, 363
Eco130I CCWWGG 2 cut(s) 56, 96
EcoT14I CCWWGG 2 cut(s) 56, 96
ErhI CCWWGG 2 cut(s) 56, 96
FaeI CATG 2 cut(s) 60, 132
FaiI YATR 4 cut(s) 58, 130, 208, 210
FaqI GGGAC 1 cut(s) 207
FatI CATG 2 cut(s) 56, 128
FauI CCCGC 1 cut(s) 184
FauNDI CATATG 1 cut(s) 208
Fnu4HI GCNGC 3 cut(s) 15, 137, 270
FokI GGATG 1 cut(s) 370
Fsp4HI GCNGC 3 cut(s) 15, 137, 270
FspBI CTAG 1 cut(s) 122
GlaI GCGC 2 cut(s) 62, 341
GluI GCNGC 3 cut(s) 15, 137, 270
HaeIII GGCC 2 cut(s) 9, 205
HhaI GCGC 2 cut(s) 63, 342
Hin1II CATG 2 cut(s) 60, 132
Hin6I GCGC 2 cut(s) 61, 340
HinP1I GCGC 2 cut(s) 61, 340
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 1 cut(s) 144
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 2 cut(s) 168, 355
HpyCH4V TGCA 2 cut(s) 17, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 60, 132
HspAI GCGC 2 cut(s) 61, 340
KpnI GGTACC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 2 cut(s) 89, 189
LpnPI CCDG 5 cut(s) 62, 100, 182, 228, 247
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 2 cut(s) 127, 300
MaeI CTAG 1 cut(s) 122
MaeIII GTNAC 2 cut(s) 110, 321
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 5 cut(s) 319, 364, 377, 380, 385
MfeI CAATTG 1 cut(s) 36
MhlI GDGCHC 3 cut(s) 154, 186, 252
MlsI TGGCCA 1 cut(s) 205
MluCI AATT 2 cut(s) 36, 168
MluNI TGGCCA 1 cut(s) 205
MnlI CCTC 4 cut(s) 35, 197, 234, 348
Mox20I TGGCCA 1 cut(s) 205
MscI TGGCCA 1 cut(s) 205
Msp20I TGGCCA 1 cut(s) 205
MunI CAATTG 1 cut(s) 36
MvnI CGCG 3 cut(s) 63, 191, 342
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 56
NdeI CATATG 1 cut(s) 208
NdeII GATC 1 cut(s) 211
NlaIII CATG 2 cut(s) 60, 132
NlaIV GGNNCC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 3 cut(s) 16, 138, 271
PspN4I GGNNCC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 274
RsaI GTAC 2 cut(s) 47, 53
RsaNI GTAC 2 cut(s) 46, 52
SatI GCNGC 3 cut(s) 15, 137, 270
Sau3AI GATC 1 cut(s) 211
SduI GDGCHC 3 cut(s) 154, 186, 252
SetI ASST 6 cut(s) 16, 86, 93, 166, 271, 386
SfaNI GCATC 2 cut(s) 127, 300
SfcI CTRYAG 1 cut(s) 270
Sse9I AATT 2 cut(s) 36, 168
SsiI CCGC 2 cut(s) 137, 191
SspMI CTAG 1 cut(s) 122
StyI CCWWGG 2 cut(s) 56, 96
TaqI TCGA 1 cut(s) 160
TasI AATT 2 cut(s) 36, 168
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 1 cut(s) 144
TscAI CASTG 2 cut(s) 154, 295
TseI GCWGC 2 cut(s) 14, 269
TspDTI ATGAA 1 cut(s) 374
TspRI CASTG 2 cut(s) 154, 295
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.