RLG00000026285

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016150
Physical Location & Seq
Reverse (-)
1888621 .. 1889283
663 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026285

Sequence Viewer

Length: 468 bp
ATGATTCTCAAAATCTCATCTTGGGTTTGTTTGTGTGCTATAGGGTTTGCTCTATCCAGAGAAACCGTAGGAAGTAAATCAATGGCTGGCCAAGCTGCAAAGTCAGTGGCAAAGGCAATTGGGGAGTACCAGTACCCATGGCGCGAGAAGTTGGTAAAATACCAGTCTGAGCTATCCAAGGGTGTATGGGGTTACTGGCATCTAGGAGCCTGGAAGCCATCTGGAATTAGTGGTCGTCAACGAGCTAGACTTCGAAAGGAAGTCCTCCTTGCAGGACAGGATTGGCCATATGATCCAGAGAGGAAAGAGATGAGGACCAAGAGGAAAGGGCACAAAGTTGACAGGATAGCTGCCGAGAAGAGGGAAAACACTGCCAGGTTGATGGAGAAGATGCCCGCTATGTTGCTTCAGTACAAGAAGCGCAGATGGGAGAAGAAGATGAAGGAAGAAGACAAGGGCAAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

18.04

Weight (kDa)

10.12

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22000
fragaria_vesca FvH4_7g31560
malus_domestica MD07G1288300.v1.1
prunus_persica Prupe.2G309800_v2.0.a1 Prupe.2G309800_v2.0.a1 Prupe.2G309800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0380551
rosa_laevigata RLG00000026285
rosa_roxburghii Rroxscaffold_4G00279200
rosa_rugosa Rorug01G0422500
rosa_samantha Rh1AG447000 Rh1BG402300 Rh1CG416500 Rh1DG432500
rosa_wichuraiana Rw1G038880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 144
AciI CCGC 1 cut(s) 396
AclWI GGATC 1 cut(s) 287
AcoI YGGCCR 2 cut(s) 88, 284
AcuI CTGAAG 1 cut(s) 392
AfaI GTAC 3 cut(s) 128, 134, 413
AfiI CCNNNNNNNGG 1 cut(s) 360
AjnI CCWGG 2 cut(s) 209, 374
AluBI AGCT 4 cut(s) 95, 172, 245, 350
AluI AGCT 4 cut(s) 95, 172, 245, 350
AlwI GGATC 1 cut(s) 287
AoxI GGCC 2 cut(s) 88, 284
ApeKI GCWGC 2 cut(s) 95, 350
AspLEI GCGC 2 cut(s) 144, 423
AspS9I GGNCC 1 cut(s) 315
AsuII TTCGAA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 315
BaeGI GKGCMC 1 cut(s) 333
BalI TGGCCA 2 cut(s) 90, 286
BbsI GAAGAC 1 cut(s) 456
BbvI GCAGC 2 cut(s) 82, 337
BccI CCATC 3 cut(s) 226, 376, 420
BciT130I CCWGG 2 cut(s) 211, 376
BfaI CTAG 2 cut(s) 203, 246
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 2 cut(s) 96, 351
BlsI GCNGC 2 cut(s) 97, 352
Bme1390I CCNGG 2 cut(s) 211, 376
Bme18I GGWCC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 2 cut(s) 211, 376
BmsI GCATC 2 cut(s) 208, 381
BpiI GAAGAC 1 cut(s) 456
Bpu14I TTCGAA 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 137, 177
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse1I ACTGG 3 cut(s) 130, 163, 200
BseBI CCWGG 2 cut(s) 211, 376
BseDI CCNNGG 2 cut(s) 137, 177
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 3 cut(s) 130, 163, 200
BseSI GKGCMC 1 cut(s) 333
BseXI GCAGC 2 cut(s) 82, 337
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 90, 286
BslI CCNNNNNNNGG 1 cut(s) 360
BsnI GGCC 2 cut(s) 90, 286
Bsp119I TTCGAA 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 1 cut(s) 292
Bsp19I CCATGG 1 cut(s) 137
BspACI CCGC 1 cut(s) 396
BspANI GGCC 2 cut(s) 90, 286
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 1 cut(s) 287
BspT104I TTCGAA 1 cut(s) 253
BsrI ACTGG 3 cut(s) 130, 163, 200
BssECI CCNNGG 2 cut(s) 137, 177
BssMI GATC 1 cut(s) 292
BssT1I CCWWGG 2 cut(s) 137, 177
Bst2UI CCWGG 2 cut(s) 211, 376
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 353
BstBI TTCGAA 1 cut(s) 253
BstC8I GCNNGC 3 cut(s) 88, 396, 461
BstDEI CTNAG 1 cut(s) 168
BstDSI CCRYGG 1 cut(s) 137
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 2 cut(s) 144, 423
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 2 cut(s) 211, 376
BstSCI CCNGG 2 cut(s) 209, 374
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 333
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 82, 337
BstV2I GAAGAC 1 cut(s) 456
BstXI CCANNNNNNTGG 1 cut(s) 382
BsuRI GGCC 2 cut(s) 90, 286
BtgI CCRYGG 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 2 cut(s) 111, 369
Cac8I GCNNGC 3 cut(s) 88, 396, 461
CfoI GCGC 2 cut(s) 144, 423
Cfr13I GGNCC 1 cut(s) 315
Csp6I GTAC 3 cut(s) 127, 133, 412
CspCI CAANNNNNGTGG 2 cut(s) 87, 122
CviAII CATG 1 cut(s) 138
CviQI GTAC 3 cut(s) 127, 133, 412
DdeI CTNAG 1 cut(s) 168
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
EaeI YGGCCR 2 cut(s) 88, 284
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
Eco130I CCWWGG 2 cut(s) 137, 177
Eco47I GGWCC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 392
EcoRII CCWGG 2 cut(s) 209, 374
EcoT14I CCWWGG 2 cut(s) 137, 177
ErhI CCWWGG 2 cut(s) 137, 177
FaeI CATG 1 cut(s) 141
FaiI YATR 6 cut(s) 41, 139, 187, 289, 291, 401
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FatI CATG 1 cut(s) 137
FauI CCCGC 1 cut(s) 403
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 96, 351
Fsp4HI GCNGC 2 cut(s) 96, 351
FspBI CTAG 2 cut(s) 203, 246
GlaI GCGC 2 cut(s) 143, 422
GluI GCNGC 2 cut(s) 96, 351
HaeIII GGCC 2 cut(s) 90, 286
HhaI GCGC 2 cut(s) 144, 423
Hin1II CATG 1 cut(s) 141
Hin6I GCGC 2 cut(s) 142, 421
HinP1I GCGC 2 cut(s) 142, 421
HincII GTYRAC 2 cut(s) 239, 340
HindII GTYRAC 2 cut(s) 239, 340
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 2 cut(s) 239, 340
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 3 cut(s) 57, 222, 296
Hpy8I GTNNAC 2 cut(s) 239, 340
HpyAV CCTTC 1 cut(s) 436
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 98, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 1 cut(s) 141
HspAI GCGC 2 cut(s) 142, 421
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 206
Lsp1109I GCAGC 2 cut(s) 82, 337
LweI GCATC 2 cut(s) 208, 381
MaeI CTAG 2 cut(s) 203, 246
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 6 cut(s) 370, 400, 445, 448, 458, 461
MfeI CAATTG 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 333
MlsI TGGCCA 2 cut(s) 90, 286
MluCI AATT 2 cut(s) 117, 225
MluNI TGGCCA 2 cut(s) 90, 286
MnlI CCTC 5 cut(s) 275, 294, 306, 315, 354
Mox20I TGGCCA 2 cut(s) 90, 286
MscI TGGCCA 2 cut(s) 90, 286
Msp20I TGGCCA 2 cut(s) 90, 286
MspR9I CCNGG 2 cut(s) 211, 376
MunI CAATTG 1 cut(s) 117
MvaI CCWGG 2 cut(s) 211, 376
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 92
NcoI CCATGG 1 cut(s) 137
NdeI CATATG 1 cut(s) 289
NdeII GATC 1 cut(s) 292
NlaIII CATG 1 cut(s) 141
NlaIV GGNNCC 1 cut(s) 208
NmeAIII GCCGAG 1 cut(s) 379
NspV TTCGAA 1 cut(s) 253
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 97, 352
Psp6I CCWGG 2 cut(s) 209, 374
PspGI CCWGG 2 cut(s) 209, 374
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 315
RsaI GTAC 3 cut(s) 128, 134, 413
RsaNI GTAC 3 cut(s) 127, 133, 412
SatI GCNGC 2 cut(s) 96, 351
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 315
ScrFI CCNGG 2 cut(s) 211, 376
SduI GDGCHC 1 cut(s) 333
SetI ASST 5 cut(s) 97, 174, 247, 352, 380
SfaNI GCATC 2 cut(s) 208, 381
SfcI CTRYAG 1 cut(s) 39
SfuI TTCGAA 1 cut(s) 253
SinI GGWCC 1 cut(s) 315
Sse9I AATT 2 cut(s) 117, 225
SsiI CCGC 1 cut(s) 396
SspMI CTAG 2 cut(s) 203, 246
StyD4I CCNGG 2 cut(s) 209, 374
StyI CCWWGG 2 cut(s) 137, 177
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 253
TasI AATT 2 cut(s) 117, 225
TatI WGTACW 1 cut(s) 411
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 2 cut(s) 111, 376
TseI GCWGC 2 cut(s) 95, 350
TspDTI ATGAA 1 cut(s) 455
TspRI CASTG 2 cut(s) 111, 376
VpaK11BI GGWCC 1 cut(s) 315
XspI CTAG 2 cut(s) 203, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.