Rh1CG416500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016150
Physical Location & Seq
Forward (+)
67777315 .. 67779052
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG416500.1

Sequence Viewer

Length: 387 bp
ATGGCTGGCCAAGCTGCAAAGTCGGTGGCAAGGGCAATTGGGGAGTACCAGTACCCATGGCGCGAGAAGTTGGTAAAATACCAGTCTGAGCTATCCAAGGGTGTATGGGGTTACTGGCATCTAGGAGCCTGGAAGCCATCTGGAATTAGTGGTCGTCAACGAGCTAGACTTCGAAAGGAAGTCCTCCTTGCAGGACAGGATTGGCCATATGATCCAGAGAGGAAAGAGATGAGGACCAAGAGGAAAGGGCACAAAGTTGACAGGATAGCTGCTGAGAAGCGGGAAAACACTGCCAGGTTGATGGAGAAGATGCCCGATATGTTGCTTCAGTACAAGAAGCGCAGATGGGAGAAGAAGATGAAGGAAGAAGACAAGGGCAAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

15.23

Weight (kDa)

10.16

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22000
fragaria_vesca FvH4_7g31560
malus_domestica MD07G1288300.v1.1
prunus_persica Prupe.2G309800_v2.0.a1 Prupe.2G309800_v2.0.a1 Prupe.2G309800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0380551
rosa_laevigata RLG00000026285
rosa_roxburghii Rroxscaffold_4G00279200
rosa_rugosa Rorug01G0422500
rosa_samantha Rh1AG447000 Rh1BG402300 Rh1CG416500 Rh1DG432500
rosa_wichuraiana Rw1G038880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 63
AciI CCGC 1 cut(s) 280
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 2 cut(s) 7, 203
AcuI CTGAAG 1 cut(s) 311
AfaI GTAC 3 cut(s) 47, 53, 332
AjnI CCWGG 2 cut(s) 128, 293
AluBI AGCT 4 cut(s) 14, 91, 164, 269
AluI AGCT 4 cut(s) 14, 91, 164, 269
AlwI GGATC 1 cut(s) 206
AoxI GGCC 2 cut(s) 7, 203
ApeKI GCWGC 2 cut(s) 14, 269
AspLEI GCGC 2 cut(s) 63, 342
AspS9I GGNCC 1 cut(s) 234
AsuII TTCGAA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 252
BalI TGGCCA 2 cut(s) 9, 205
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 1 cut(s) 256
BccI CCATC 3 cut(s) 145, 295, 339
BciT130I CCWGG 2 cut(s) 130, 295
BfaI CTAG 2 cut(s) 122, 165
BisI GCNGC 2 cut(s) 15, 270
BlsI GCNGC 2 cut(s) 16, 271
Bme1390I CCNGG 2 cut(s) 130, 295
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 2 cut(s) 130, 295
BmsI GCATC 2 cut(s) 127, 300
BpiI GAAGAC 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 172
BsaJI CCNNGG 2 cut(s) 56, 96
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bse1I ACTGG 3 cut(s) 49, 82, 119
BseBI CCWGG 2 cut(s) 130, 295
BseDI CCNNGG 2 cut(s) 56, 96
BseMII CTCAG 2 cut(s) 78, 264
BseNI ACTGG 3 cut(s) 49, 82, 119
BseSI GKGCMC 1 cut(s) 252
BseXI GCAGC 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 2 cut(s) 9, 205
BsnI GGCC 2 cut(s) 9, 205
Bsp119I TTCGAA 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 1 cut(s) 211
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 1 cut(s) 280
BspANI GGCC 2 cut(s) 9, 205
BspCNI CTCAG 2 cut(s) 79, 265
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 172
BsrI ACTGG 3 cut(s) 49, 82, 119
BssECI CCNNGG 2 cut(s) 56, 96
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 2 cut(s) 56, 96
Bst2UI CCWGG 2 cut(s) 130, 295
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 7, 380
BstDEI CTNAG 2 cut(s) 87, 273
BstDSI CCRYGG 1 cut(s) 56
BstFNI CGCG 1 cut(s) 63
BstHHI GCGC 2 cut(s) 63, 342
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 130, 295
BstSCI CCNGG 2 cut(s) 128, 293
BstSLI GKGCMC 1 cut(s) 252
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 375
BstXI CCANNNNNNTGG 1 cut(s) 301
BsuRI GGCC 2 cut(s) 9, 205
BtgI CCRYGG 1 cut(s) 56
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 7, 380
CfoI GCGC 2 cut(s) 63, 342
Cfr13I GGNCC 1 cut(s) 234
Csp6I GTAC 3 cut(s) 46, 52, 331
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 1 cut(s) 57
CviQI GTAC 3 cut(s) 46, 52, 331
DdeI CTNAG 2 cut(s) 87, 273
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
EaeI YGGCCR 2 cut(s) 7, 203
Eco130I CCWWGG 2 cut(s) 56, 96
Eco47I GGWCC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 311
EcoRII CCWGG 2 cut(s) 128, 293
EcoT14I CCWWGG 2 cut(s) 56, 96
ErhI CCWWGG 2 cut(s) 56, 96
FaeI CATG 1 cut(s) 60
FaiI YATR 5 cut(s) 58, 106, 208, 210, 320
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FatI CATG 1 cut(s) 56
FauI CCCGC 1 cut(s) 273
FauNDI CATATG 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 15, 270
Fsp4HI GCNGC 2 cut(s) 15, 270
FspBI CTAG 2 cut(s) 122, 165
GlaI GCGC 2 cut(s) 62, 341
GluI GCNGC 2 cut(s) 15, 270
HaeIII GGCC 2 cut(s) 9, 205
HhaI GCGC 2 cut(s) 63, 342
Hin1II CATG 1 cut(s) 60
Hin6I GCGC 2 cut(s) 61, 340
HinP1I GCGC 2 cut(s) 61, 340
HincII GTYRAC 2 cut(s) 158, 259
HindII GTYRAC 2 cut(s) 158, 259
Hpy166II GTNNAC 2 cut(s) 158, 259
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 141, 215
Hpy8I GTNNAC 2 cut(s) 158, 259
HpyAV CCTTC 1 cut(s) 355
HpyCH4V TGCA 2 cut(s) 17, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 87, 273
Hsp92II CATG 1 cut(s) 60
HspAI GCGC 2 cut(s) 61, 340
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 125
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 2 cut(s) 127, 300
MaeI CTAG 2 cut(s) 122, 165
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 5 cut(s) 319, 364, 367, 377, 380
MfeI CAATTG 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 252
MlsI TGGCCA 2 cut(s) 9, 205
MluCI AATT 2 cut(s) 36, 144
MluNI TGGCCA 2 cut(s) 9, 205
MnlI CCTC 4 cut(s) 194, 213, 225, 234
Mox20I TGGCCA 2 cut(s) 9, 205
MscI TGGCCA 2 cut(s) 9, 205
Msp20I TGGCCA 2 cut(s) 9, 205
MspR9I CCNGG 2 cut(s) 130, 295
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 2 cut(s) 130, 295
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 56
NdeI CATATG 1 cut(s) 208
NdeII GATC 1 cut(s) 211
NlaIII CATG 1 cut(s) 60
NlaIV GGNNCC 1 cut(s) 127
NspV TTCGAA 1 cut(s) 172
PkrI GCNGC 2 cut(s) 16, 271
Psp6I CCWGG 2 cut(s) 128, 293
PspGI CCWGG 2 cut(s) 128, 293
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 234
RsaI GTAC 3 cut(s) 47, 53, 332
RsaNI GTAC 3 cut(s) 46, 52, 331
SatI GCNGC 2 cut(s) 15, 270
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 234
ScrFI CCNGG 2 cut(s) 130, 295
SduI GDGCHC 1 cut(s) 252
SetI ASST 5 cut(s) 16, 93, 166, 271, 299
SfaNI GCATC 2 cut(s) 127, 300
SfuI TTCGAA 1 cut(s) 172
SinI GGWCC 1 cut(s) 234
Sse9I AATT 2 cut(s) 36, 144
SsiI CCGC 1 cut(s) 280
SspMI CTAG 2 cut(s) 122, 165
StyD4I CCNGG 2 cut(s) 128, 293
StyI CCWWGG 2 cut(s) 56, 96
TaqI TCGA 1 cut(s) 172
TasI AATT 2 cut(s) 36, 144
TatI WGTACW 1 cut(s) 330
TscAI CASTG 1 cut(s) 295
TseI GCWGC 2 cut(s) 14, 269
TspDTI ATGAA 1 cut(s) 374
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 234
XspI CTAG 2 cut(s) 122, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.