FvH4_7g33020

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017370
Physical Location & Seq
Reverse (-)
23604453 .. 23606086
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33020.t1

Sequence Viewer

Length: 984 bp
ATGAGTTCACAGAATCTAAAAAGCGTGTATATAGTTTTGTTTTGTGTTCTGTTATGTCGAAGAGGTGTTGATTCACAGCTCCAAGTTGGGTTTTATGGAGGTTCATGTAACATAGCGGAGTTCATTGTGAAGGAGGAAGTTCGAAAAGGGTTCATTGGAAACCGAGGAGTGGCAGCTGGTCTTGTGAGACTGCACTTTCACGATTGCTTTGTTAGGGGCTGTGATGCATCAGTGCTGATTGATTCAACTACCTCGAATACAGCAGAAAAAGATGCACCAGCAAACAACCCGAGTCTACGAGGGTTTGAAGTCATCGACAATGCCAAGGCCAGACTTGAATCTATATGCAAAGGTGTCGTATCATGTGCTGATATAGTTGCTTTTGCAGCAAGGGACAGCGTTGAACTTACTGGAGGGCTTGGCTATGACGTTCCTGCTGGAAGAAGAGATGGCAGAGTTTCAGTAGCTTCAGACACATTCACAAACTTGCCTCCTCCAACAGCCAATGTCAACCAACTCACTCAACTTTTTGCAAACAAGGGTTTCACACAAGATGAAATGGTCACTCTCTCTGGAGCACACACAATCGGGCGCTCTCACTGCGGTTCTTTCAGTAATAGATTGTACAGTTTCAATGCAACAACAAACCAGGACCCTAGTTTAGATCCCAGATATGCTGCGCAGTTGAAGCAGCAATGTCCACAAGGCAACACAAATCCAAACTTGGTGGTTGCCATGAATCCTTCCAGCCCTTTCACAAACGATGTAGCCTACTACGCTGACATTCTGGCAAACCGAGGCTTGTTCACATCAGACCAAACTCTCATTTCAAACTCTGCAACCGCAAACCAAGTTAATCAGAATGCCAGGAATCCCTTCCTGTGGAATTACAAATTTGCTGCTGCAATGGTGAAGATGGGCCGACTCGGTGTCCTCACCGGCAATGCTGGTGAGATTCGGGCAAATTGCAGGGTCATCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

328

Amino Acids

35.25

Weight (kDa)

8.51

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 291 1.1e-87 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33020
malus_domestica MD07G1301400.v1.1
prunus_persica Prupe.2G320000_v2.0.a1 Prupe.2G320000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0383031
rosa_laevigata RLG00000026137
rosa_multiflora Rmu_co8459779.1_g000001
rosa_rugosa Rorug01G0437800
rosa_samantha Rh1AG463500 Rh1BG420600 Rh1CG434100 Rh1DG453200
rosa_wichuraiana Rw1G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 681
AccI GTMKAC 1 cut(s) 295
AciI CCGC 3 cut(s) 116, 603, 843
AclWI GGATC 1 cut(s) 659
AcsI RAATTY 1 cut(s) 893
AcuI CTGAAG 1 cut(s) 453
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 2 cut(s) 169, 882
AgsI TTSAA 7 cut(s) 246, 308, 338, 404, 634, 688, 831
AhdI GACNNNNNGTC 1 cut(s) 929
AjnI CCWGG 2 cut(s) 648, 866
AluBI AGCT 3 cut(s) 79, 176, 467
AluI AGCT 3 cut(s) 79, 176, 467
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 1 cut(s) 659
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 2 cut(s) 327, 919
ApeKI GCWGC 6 cut(s) 173, 386, 677, 691, 899, 902
ApoI RAATTY 1 cut(s) 893
Asp700I GAANNNNTTC 1 cut(s) 875
AspLEI GCGC 2 cut(s) 594, 682
AspS9I GGNCC 2 cut(s) 652, 919
AsuHPI GGTGA 3 cut(s) 922, 928, 962
AsuII TTCGAA 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 1 cut(s) 652
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 6 cut(s) 185, 398, 664, 703, 886, 889
BccI CCATC 2 cut(s) 443, 910
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BciT130I CCWGG 2 cut(s) 650, 868
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 2 cut(s) 657, 982
BfoI RGCGCY 1 cut(s) 595
BisI GCNGC 6 cut(s) 174, 387, 678, 692, 900, 903
BlsI GCNGC 6 cut(s) 175, 388, 679, 693, 901, 904
Bme1390I CCNGG 2 cut(s) 650, 868
Bme18I GGWCC 1 cut(s) 652
BmeRI GACNNNNNGTC 1 cut(s) 929
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 652, 919
BmiI GGNNCC 1 cut(s) 654
BmrFI CCNGG 2 cut(s) 650, 868
BmsI GCATC 3 cut(s) 214, 236, 262
BpmI CTGGAG 2 cut(s) 432, 594
Bpu14I TTCGAA 1 cut(s) 142
BsaJI CCNNGG 3 cut(s) 163, 324, 796
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 882
Bse118I RCCGGY 1 cut(s) 938
Bse1I ACTGG 1 cut(s) 415
Bse3DI GCAATG 3 cut(s) 701, 912, 949
BseBI CCWGG 2 cut(s) 650, 868
BseDI CCNNGG 3 cut(s) 163, 324, 796
BseLI CCNNNNNNNGG 2 cut(s) 169, 882
BseMI GCAATG 3 cut(s) 701, 912, 949
BseNI ACTGG 1 cut(s) 415
BseRI GAGGAG 2 cut(s) 180, 483
BseXI GCAGC 6 cut(s) 185, 398, 664, 703, 886, 889
BsgI GTGCAG 1 cut(s) 176
BshFI GGCC 2 cut(s) 329, 921
BsiHKAI GWGCWC 1 cut(s) 580
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 1 cut(s) 939
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 2 cut(s) 169, 882
BsmAI GTCTC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 407
BsmI GAATGC 1 cut(s) 868
BsnI GGCC 2 cut(s) 329, 921
BsoBI CYCGRG 1 cut(s) 289
Bsp119I TTCGAA 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 580
Bsp1407I TGTACA 1 cut(s) 624
Bsp143I GATC 1 cut(s) 664
BspACI CCGC 3 cut(s) 116, 603, 843
BspANI GGCC 2 cut(s) 329, 921
BspLI GGNNCC 1 cut(s) 654
BspPI GGATC 1 cut(s) 659
BspT104I TTCGAA 1 cut(s) 142
BsrDI GCAATG 3 cut(s) 701, 912, 949
BsrFI RCCGGY 1 cut(s) 938
BsrGI TGTACA 1 cut(s) 624
BsrI ACTGG 1 cut(s) 415
BssAI RCCGGY 1 cut(s) 938
BssECI CCNNGG 3 cut(s) 163, 324, 796
BssMI GATC 1 cut(s) 664
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 650, 868
Bst4CI ACNGT 1 cut(s) 629
Bst6I CTCTTC 2 cut(s) 55, 439
BstAUI TGTACA 1 cut(s) 624
BstBI TTCGAA 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 595
BstHHI GCGC 2 cut(s) 594, 682
BstKTI GATC 1 cut(s) 667
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 1 cut(s) 664
BstMWI GCNNNNNNNGC 4 cut(s) 386, 600, 688, 776
BstNI CCWGG 2 cut(s) 650, 868
BstSCI CCNGG 2 cut(s) 648, 866
BstV1I GCAGC 6 cut(s) 185, 398, 664, 703, 886, 889
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
BsuRI GGCC 2 cut(s) 329, 921
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 2 cut(s) 237, 598
CfoI GCGC 2 cut(s) 594, 682
Cfr10I RCCGGY 1 cut(s) 938
Cfr13I GGNCC 2 cut(s) 652, 919
Csp6I GTAC 1 cut(s) 625
CspCI CAANNNNNGTGG 2 cut(s) 708, 743
CviAII CATG 3 cut(s) 105, 363, 736
CviQI GTAC 1 cut(s) 625
DpnI GATC 1 cut(s) 666
DpnII GATC 1 cut(s) 664
DriI GACNNNNNGTC 1 cut(s) 929
Eam1104I CTCTTC 2 cut(s) 55, 439
Eam1105I GACNNNNNGTC 1 cut(s) 929
EarI CTCTTC 2 cut(s) 55, 439
Eco130I CCWWGG 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 453
Eco88I CYCGRG 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 652
EcoRII CCWGG 2 cut(s) 648, 866
EcoT14I CCWWGG 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 3 cut(s) 108, 366, 739
FaqI GGGAC 1 cut(s) 407
FatI CATG 3 cut(s) 104, 362, 735
FblI GTMKAC 1 cut(s) 295
Fnu4HI GCNGC 6 cut(s) 174, 387, 678, 692, 900, 903
Fsp4HI GCNGC 6 cut(s) 174, 387, 678, 692, 900, 903
FspBI CTAG 2 cut(s) 657, 982
FspI TGCGCA 1 cut(s) 681
GlaI GCGC 2 cut(s) 593, 681
GluI GCNGC 6 cut(s) 174, 387, 678, 692, 900, 903
GsuI CTGGAG 2 cut(s) 432, 594
HaeII RGCGCY 1 cut(s) 595
HaeIII GGCC 2 cut(s) 329, 921
HapII CCGG 1 cut(s) 939
HhaI GCGC 2 cut(s) 594, 682
Hin1II CATG 3 cut(s) 108, 366, 739
Hin6I GCGC 2 cut(s) 592, 680
HinP1I GCGC 2 cut(s) 592, 680
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 9 cut(s) 13, 71, 242, 292, 338, 739, 871, 924, 955
HpaII CCGG 1 cut(s) 939
HphI GGTGA 3 cut(s) 922, 928, 962
Hpy166II GTNNAC 5 cut(s) 8, 296, 511, 701, 807
Hpy188I TCNGA 3 cut(s) 472, 814, 861
Hpy188III TCNNGA 2 cut(s) 200, 573
Hpy8I GTNNAC 5 cut(s) 8, 296, 511, 701, 807
HpyAV CCTTC 3 cut(s) 124, 753, 886
HpyCH4III ACNGT 1 cut(s) 629
HpyCH4IV ACGT 1 cut(s) 429
HpyF10VI GCNNNNNNNGC 4 cut(s) 386, 600, 688, 776
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 3 cut(s) 108, 366, 739
HspAI GCGC 2 cut(s) 592, 680
Kzo9I GATC 1 cut(s) 664
LmnI GCTCC 2 cut(s) 84, 575
Lsp1109I GCAGC 6 cut(s) 185, 398, 664, 703, 886, 889
LweI GCATC 3 cut(s) 214, 236, 262
MaeI CTAG 2 cut(s) 657, 982
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 2 cut(s) 107, 562
MalI GATC 1 cut(s) 666
MboI GATC 1 cut(s) 664
MboII GAAGA 4 cut(s) 72, 453, 456, 925
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 3 cut(s) 886, 893, 964
MlyI GAGTC 2 cut(s) 301, 918
MmeI TCCRAC 1 cut(s) 521
Mph1103I ATGCAT 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 875
MseI TTAA 1 cut(s) 855
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 1 cut(s) 939
MspR9I CCNGG 2 cut(s) 650, 868
Mva1269I GAATGC 1 cut(s) 868
MvaI CCWGG 2 cut(s) 650, 868
MwoI GCNNNNNNNGC 4 cut(s) 386, 600, 688, 776
NdeII GATC 1 cut(s) 664
NlaIII CATG 3 cut(s) 108, 366, 739
NlaIV GGNNCC 1 cut(s) 654
NmuCI GTSAC 1 cut(s) 562
NsbI TGCGCA 1 cut(s) 681
NsiI ATGCAT 1 cut(s) 229
NspV TTCGAA 1 cut(s) 142
PctI GAATGC 1 cut(s) 868
PdmI GAANNNNTTC 1 cut(s) 875
PfeI GAWTC 7 cut(s) 13, 71, 242, 338, 739, 871, 955
PkrI GCNGC 6 cut(s) 175, 388, 679, 693, 901, 904
PleI GAGTC 2 cut(s) 300, 918
PpsI GAGTC 2 cut(s) 300, 918
PpuMI RGGWCCY 1 cut(s) 652
Psp5II RGGWCCY 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 648, 866
PspGI CCWGG 2 cut(s) 648, 866
PspN4I GGNNCC 1 cut(s) 654
PspPI GGNCC 2 cut(s) 652, 919
PspPPI RGGWCCY 1 cut(s) 652
PsuI RGATCY 1 cut(s) 664
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
SaqAI TTAA 1 cut(s) 855
SatI GCNGC 6 cut(s) 174, 387, 678, 692, 900, 903
Sau3AI GATC 1 cut(s) 664
Sau96I GGNCC 2 cut(s) 652, 919
SchI GAGTC 2 cut(s) 301, 918
ScrFI CCNGG 2 cut(s) 650, 868
SduI GDGCHC 1 cut(s) 580
SetI ASST 8 cut(s) 67, 81, 103, 178, 254, 355, 432, 469
SfaNI GCATC 3 cut(s) 214, 236, 262
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 1 cut(s) 652
Sse9I AATT 3 cut(s) 886, 893, 964
SsiI CCGC 3 cut(s) 116, 603, 843
SspMI CTAG 2 cut(s) 657, 982
StyD4I CCNGG 2 cut(s) 648, 866
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 629
TaiI ACGT 1 cut(s) 432
TaqI TCGA 4 cut(s) 58, 142, 254, 315
TasI AATT 3 cut(s) 886, 893, 964
TatI WGTACW 1 cut(s) 624
TfiI GAWTC 7 cut(s) 13, 71, 242, 338, 739, 871, 955
Tru1I TTAA 1 cut(s) 855
Tru9I TTAA 1 cut(s) 855
TscAI CASTG 2 cut(s) 237, 605
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 6 cut(s) 173, 386, 677, 691, 899, 902
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 5 cut(s) 93, 112, 142, 570, 752
TspRI CASTG 2 cut(s) 237, 605
VpaK11BI GGWCC 1 cut(s) 652
XapI RAATTY 1 cut(s) 893
XmiI GTMKAC 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 875
XspI CTAG 2 cut(s) 657, 982
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.