Rh1DG453200

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017370
Physical Location & Seq
Reverse (-)
66029017 .. 66031196
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG453200.1

Sequence Viewer

Length: 960 bp
ATGACTCCTGAGTCAACCTTGCTGCATAGTTTTAATCCAGGTGTTGATTCACAGCTCCAAGTTGGGTTTTATACAAGTTCATGTAACGTAGCGGAGTTCATTGTGAAGGAGGAAGTTCGAAAAGGGGTGATTGGAAATCGAGGAGTGGCAGCTGGTCTTGTGAGACTGCACTTTCATGACTGCTTTGTTAGGGGTTGTGATGCATCAGTGCTGATTGATTCAACTTCCTCAAACACAGCAGAAAAAGATGCACCAGCAAACAACCCGAGTCTACGAGGGTTTGAAGTCATCGACAATGCCAAGGCCAGACTTGAATCTATATGCAAAGGTGTCGTATCATGTGCTGATATAGTTGCTTTTGCAGCAAGGGATAGCGTTGAACTTACTGGAGGGCTTGGCTATGACGTTCCTGCTGGAAGAAGAGATGGCAGAGTTTCAGTAGCTTCAGACACATTCACAAACTTGCCTCCTCCAACTGCCAATGTCAACCAACTCACTCAACTTTTTTCAAACAAGGGTTTCACGCAAGATGAAATGGTCACTCTCTCTGGAGCACACACAATTGGGCGCTCTCACTGCAGTTCTTTCAGTAATAGATTGTACAACTTCAATGCAACAACAAAGCAGGACCCTAGTTTAGATCCCCAGTACGCTGCGCAGTTGAAGCAGCAATGTCCACAAGGCAACACAAATCCAAACCTAGTGGTTGGCATGAACCCTTTCAGCCCTTTCACAACCGATGTATCCTACTACGCTGACATTTTGGCAAACCGAGGCTTGTTCACATCAGACCAAACTCTCATCACAAACTCTGCAACCGCAAACCAAGTTAATCAAAATGCCAGGAATCCCTTCCTGTGGAATGACAAATTTGCTGCCGCAATGGTGAAGATGGGACGACTCGGTGTCCTGACTGGCAATGATGGTGAGATTCGGGCAAAGTGCAGGGTCTTTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

319

Amino Acids

34.42

Weight (kDa)

6.52

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 35 - 283 1.4e-87 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33020
malus_domestica MD07G1301400.v1.1
prunus_persica Prupe.2G320000_v2.0.a1 Prupe.2G320000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0383031
rosa_laevigata RLG00000026137
rosa_multiflora Rmu_co8459779.1_g000001
rosa_rugosa Rorug01G0437800
rosa_samantha Rh1AG463500 Rh1BG420600 Rh1CG434100 Rh1DG453200
rosa_wichuraiana Rw1G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
Acc16I TGCGCA 1 cut(s) 657
AccI GTMKAC 1 cut(s) 271
AciI CCGC 3 cut(s) 92, 819, 879
AclWI GGATC 1 cut(s) 635
AcsI RAATTY 1 cut(s) 869
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 2 cut(s) 602, 650
AfiI CCNNNNNNNGG 1 cut(s) 858
AgsI TTSAA 7 cut(s) 222, 284, 314, 380, 510, 610, 664
AhdI GACNNNNNGTC 1 cut(s) 905
AjnI CCWGG 2 cut(s) 37, 842
AluBI AGCT 3 cut(s) 55, 152, 443
AluI AGCT 3 cut(s) 55, 152, 443
Alw21I GWGCWC 1 cut(s) 556
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 6 cut(s) 22, 149, 362, 653, 667, 875
ApoI RAATTY 1 cut(s) 869
Asp700I GAANNNNTTC 2 cut(s) 719, 851
AspLEI GCGC 2 cut(s) 570, 658
AspS9I GGNCC 1 cut(s) 628
AsuHPI GGTGA 3 cut(s) 139, 898, 938
AsuII TTCGAA 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 1 cut(s) 628
BaeI ACNNNNGTAYC 2 cut(s) 726, 759
Bbv12I GWGCWC 1 cut(s) 556
BbvI GCAGC 6 cut(s) 9, 161, 374, 640, 679, 862
BccI CCATC 3 cut(s) 419, 886, 917
BcgI CGANNNNNNTGC 2 cut(s) 313, 347
BciT130I CCWGG 2 cut(s) 39, 844
BciVI GTATCC 1 cut(s) 754
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 3 cut(s) 633, 701, 958
BfmI CTRYAG 1 cut(s) 577
BfoI RGCGCY 1 cut(s) 571
BfuI GTATCC 1 cut(s) 754
BisI GCNGC 7 cut(s) 23, 150, 363, 654, 668, 876, 879
BlsI GCNGC 7 cut(s) 24, 151, 364, 655, 669, 877, 880
Bme1390I CCNGG 2 cut(s) 39, 844
Bme18I GGWCC 1 cut(s) 628
BmeRI GACNNNNNGTC 1 cut(s) 905
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 1 cut(s) 630
BmrFI CCNGG 2 cut(s) 39, 844
BmrI ACTGGG 1 cut(s) 640
BmsI GCATC 3 cut(s) 190, 212, 238
BmuI ACTGGG 1 cut(s) 640
BpmI CTGGAG 2 cut(s) 408, 570
Bpu14I TTCGAA 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 300, 772
Bsc4I CCNNNNNNNGG 1 cut(s) 858
Bse1I ACTGG 3 cut(s) 391, 646, 919
Bse3DI GCAATG 3 cut(s) 677, 888, 925
BseBI CCWGG 2 cut(s) 39, 844
BseDI CCNNGG 2 cut(s) 300, 772
BseLI CCNNNNNNNGG 1 cut(s) 858
BseMI GCAATG 3 cut(s) 677, 888, 925
BseNI ACTGG 3 cut(s) 391, 646, 919
BseRI GAGGAG 2 cut(s) 156, 459
BseXI GCAGC 6 cut(s) 9, 161, 374, 640, 679, 862
BsgI GTGCAG 1 cut(s) 152
BshFI GGCC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 556
BsiHKCI CYCGRG 1 cut(s) 265
BslFI GGGAC 1 cut(s) 909
BslI CCNNNNNNNGG 1 cut(s) 858
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 909
BsnI GGCC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 265
Bsp119I TTCGAA 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 556
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 1 cut(s) 640
BspACI CCGC 3 cut(s) 92, 819, 879
BspANI GGCC 1 cut(s) 305
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 630
BspMAI CTGCAG 1 cut(s) 581
BspPI GGATC 1 cut(s) 635
BspT104I TTCGAA 1 cut(s) 118
BsrDI GCAATG 3 cut(s) 677, 888, 925
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 3 cut(s) 391, 646, 919
BssECI CCNNGG 2 cut(s) 300, 772
BssMI GATC 1 cut(s) 640
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 2 cut(s) 39, 844
Bst6I CTCTTC 1 cut(s) 415
BstAUI TGTACA 1 cut(s) 600
BstBI TTCGAA 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 9
BstH2I RGCGCY 1 cut(s) 571
BstHHI GCGC 2 cut(s) 570, 658
BstKTI GATC 1 cut(s) 643
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 1 cut(s) 640
BstMWI GCNNNNNNNGC 3 cut(s) 362, 576, 664
BstNI CCWGG 2 cut(s) 39, 844
BstSCI CCNGG 2 cut(s) 37, 842
BstSFI CTRYAG 1 cut(s) 577
BstV1I GCAGC 6 cut(s) 9, 161, 374, 640, 679, 862
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BsuI GTATCC 1 cut(s) 754
BsuRI GGCC 1 cut(s) 305
BtsI GCAGTG 1 cut(s) 574
BtsIMutI CAGTG 2 cut(s) 213, 574
CciI TCATGA 1 cut(s) 175
CfoI GCGC 2 cut(s) 570, 658
Cfr13I GGNCC 1 cut(s) 628
Csp6I GTAC 2 cut(s) 601, 649
CspCI CAANNNNNGTGG 2 cut(s) 684, 719
CviAII CATG 4 cut(s) 81, 176, 339, 712
CviJI RGCY 8 cut(s) 55, 152, 305, 394, 399, 443, 726, 777
CviKI_1 RGCY 8 cut(s) 55, 152, 305, 394, 399, 443, 726, 777
CviQI GTAC 2 cut(s) 601, 649
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 642
DpnII GATC 1 cut(s) 640
DrdI GACNNNNNNGTC 1 cut(s) 10
DriI GACNNNNNGTC 1 cut(s) 905
DseDI GACNNNNNNGTC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 415
Eam1105I GACNNNNNGTC 1 cut(s) 905
EarI CTCTTC 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 628
Eco57I CTGAAG 1 cut(s) 429
Eco88I CYCGRG 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 628
EcoRII CCWGG 2 cut(s) 37, 842
EcoT14I CCWWGG 1 cut(s) 300
EcoT22I ATGCAT 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 4 cut(s) 84, 179, 342, 715
FaqI GGGAC 1 cut(s) 909
FatI CATG 4 cut(s) 80, 175, 338, 711
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 7 cut(s) 23, 150, 363, 654, 668, 876, 879
Fsp4HI GCNGC 7 cut(s) 23, 150, 363, 654, 668, 876, 879
FspBI CTAG 3 cut(s) 633, 701, 958
FspI TGCGCA 1 cut(s) 657
GlaI GCGC 2 cut(s) 569, 657
GluI GCNGC 7 cut(s) 23, 150, 363, 654, 668, 876, 879
GsuI CTGGAG 2 cut(s) 408, 570
HaeII RGCGCY 1 cut(s) 571
HaeIII GGCC 1 cut(s) 305
HhaI GCGC 2 cut(s) 570, 658
Hin1II CATG 4 cut(s) 84, 179, 342, 715
Hin6I GCGC 2 cut(s) 568, 656
HinP1I GCGC 2 cut(s) 568, 656
HincII GTYRAC 2 cut(s) 15, 487
HindII GTYRAC 2 cut(s) 15, 487
HinfI GANTC 9 cut(s) 4, 11, 47, 218, 268, 314, 847, 900, 931
HphI GGTGA 3 cut(s) 139, 898, 938
Hpy166II GTNNAC 5 cut(s) 15, 272, 487, 677, 783
Hpy188I TCNGA 2 cut(s) 448, 790
Hpy188III TCNNGA 4 cut(s) 8, 176, 549, 910
Hpy8I GTNNAC 5 cut(s) 15, 272, 487, 677, 783
HpyAV CCTTC 2 cut(s) 100, 862
HpyCH4IV ACGT 2 cut(s) 87, 405
HpyF10VI GCNNNNNNNGC 3 cut(s) 362, 576, 664
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 2 cut(s) 87, 405
Hsp92II CATG 4 cut(s) 84, 179, 342, 715
HspAI GCGC 2 cut(s) 568, 656
Kzo9I GATC 1 cut(s) 640
LmnI GCTCC 2 cut(s) 60, 551
Lsp1109I GCAGC 6 cut(s) 9, 161, 374, 640, 679, 862
LweI GCATC 3 cut(s) 190, 212, 238
MaeI CTAG 3 cut(s) 633, 701, 958
MaeII ACGT 2 cut(s) 87, 405
MaeIII GTNAC 2 cut(s) 83, 538
MalI GATC 1 cut(s) 642
MboI GATC 1 cut(s) 640
MboII GAAGA 3 cut(s) 429, 432, 901
MfeI CAATTG 1 cut(s) 561
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 1 cut(s) 556
MluCI AATT 2 cut(s) 561, 869
MlyI GAGTC 3 cut(s) 20, 277, 894
MmeI TCCRAC 1 cut(s) 497
MnlI CCTC 8 cut(s) 103, 134, 238, 269, 383, 477, 480, 767
Mph1103I ATGCAT 1 cut(s) 205
MroXI GAANNNNTTC 2 cut(s) 719, 851
MseI TTAA 3 cut(s) 33, 831, 954
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 39, 844
MunI CAATTG 1 cut(s) 561
MvaI CCWGG 2 cut(s) 39, 844
MwoI GCNNNNNNNGC 3 cut(s) 362, 576, 664
NdeII GATC 1 cut(s) 640
NlaIII CATG 4 cut(s) 84, 179, 342, 715
NlaIV GGNNCC 1 cut(s) 630
NmuCI GTSAC 1 cut(s) 538
NsbI TGCGCA 1 cut(s) 657
NsiI ATGCAT 1 cut(s) 205
NspV TTCGAA 1 cut(s) 118
PagI TCATGA 1 cut(s) 175
PdmI GAANNNNTTC 2 cut(s) 719, 851
PfeI GAWTC 5 cut(s) 47, 218, 314, 847, 931
PkrI GCNGC 7 cut(s) 24, 151, 364, 655, 669, 877, 880
PleI GAGTC 3 cut(s) 19, 276, 894
PpsI GAGTC 3 cut(s) 19, 276, 894
PpuMI RGGWCCY 1 cut(s) 628
Psp5II RGGWCCY 1 cut(s) 628
Psp6I CCWGG 2 cut(s) 37, 842
PspGI CCWGG 2 cut(s) 37, 842
PspN4I GGNNCC 1 cut(s) 630
PspPI GGNCC 1 cut(s) 628
PspPPI RGGWCCY 1 cut(s) 628
PstI CTGCAG 1 cut(s) 581
PsuI RGATCY 1 cut(s) 640
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 2 cut(s) 602, 650
RsaNI GTAC 2 cut(s) 601, 649
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 3 cut(s) 33, 831, 954
SatI GCNGC 7 cut(s) 23, 150, 363, 654, 668, 876, 879
Sau3AI GATC 1 cut(s) 640
Sau96I GGNCC 1 cut(s) 628
SchI GAGTC 3 cut(s) 20, 277, 894
ScrFI CCNGG 2 cut(s) 39, 844
SduI GDGCHC 1 cut(s) 556
SetI ASST 9 cut(s) 20, 43, 57, 90, 154, 331, 408, 445, 702
SfaNI GCATC 3 cut(s) 190, 212, 238
SfcI CTRYAG 1 cut(s) 577
SfuI TTCGAA 1 cut(s) 118
SinI GGWCC 1 cut(s) 628
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 2 cut(s) 561, 869
SsiI CCGC 3 cut(s) 92, 819, 879
SspMI CTAG 3 cut(s) 633, 701, 958
StyD4I CCNGG 2 cut(s) 37, 842
StyI CCWWGG 1 cut(s) 300
TaiI ACGT 2 cut(s) 90, 408
TaqI TCGA 3 cut(s) 118, 139, 291
TasI AATT 2 cut(s) 561, 869
TatI WGTACW 1 cut(s) 600
TauI GCSGC 1 cut(s) 881
TfiI GAWTC 5 cut(s) 47, 218, 314, 847, 931
Tru1I TTAA 3 cut(s) 33, 831, 954
Tru9I TTAA 3 cut(s) 33, 831, 954
TscAI CASTG 2 cut(s) 213, 581
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 6 cut(s) 22, 149, 362, 653, 667, 875
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 5 cut(s) 69, 88, 164, 546, 728
TspRI CASTG 2 cut(s) 213, 581
VpaK11BI GGWCC 1 cut(s) 628
XapI RAATTY 1 cut(s) 869
XmiI GTMKAC 1 cut(s) 271
XmnI GAANNNNTTC 2 cut(s) 719, 851
XspI CTAG 3 cut(s) 633, 701, 958
Zsp2I ATGCAT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.