MD07G1301400.v1.1

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0017370
Physical Location & Seq
Reverse (-)
36009874 .. 36011393
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1301400.v1.1.491

Sequence Viewer

Length: 996 bp
ATGAAAATGAGTACTCCGCTAAATCTAAGTCGTGTTTTCAAACTTTTAGTTGTGGTCTTGTTTTTTCAGAGTGTTCATTCGCAGCTCCAAGTAGGGTTTTATACAACTTCGTGCACCTTAGCAGAGACAATCGTTAAGGACGAGGTTCAAAAAGCGTTCTTTCGGGATCCAGGCGTCACGGCCGGTCTTGTGAGAATGCACTTTCATGACTGTTTTGTCAGGGGTTGTGATGCATCAGTACTCATCGATTCTACTTCCTCGAATACGGCAGAAAAGGACTCGCCGGCAAACAACCCGAGTCTTCGAGGGTTCGAAGTCATTGACAAAGCAAAGGCCAGACTTGAAGCTGCATGCCGAGGTGTTATATCCTGCGCTGATATAGTTGCTTTTGCAGCAAGGGACAGCATAGTTCTTACTAGAGGGCTTGGCTATGACGTTCCTGCCGGAAGAAGAGACAGCAGAAGTTCCAAAGCTTCGGACATACCCGGAAACTACCTTTCCCGACATTCAATGTCGACAACCTCACTCAACTTTTCGCAAACAAGGGTTTCACACAAGAAGAAATGGTTACTCTCTCTGGTACGAGCGCACACCATTGGCCGCTCTCATTGCACTTCTTTCAGCAACAGATTGTACAATTTTAACGCAACAACAAATCAGGACCCGAGTTTAGATCCGGCATACGCTGCTCAGTTGAAGCAGCAGTGCCCGCAAGGCAACACAAATGCAAACTTGGTGGTTCCGATGGACCCAGCCAGCCCTATCGTCACGGATGCAAGTTACTACGCTGGCATCCTTAAAAACCGAGGCTTGTTCACATCAGACCAAACTCTCCTCACAAACCCAGCAACCGCAAACCAAGTGAAACATAATGCAAGGATTCCTCTCCTTTGGAAGAAAAAATTTTCTGCTGCAATGGTGAAGATGGGACAGCTCGAAGTCTTAATGGGCAATGCCGGTGAGATTCGAGCAAATTGCAGGGCAATTAACAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

332

Amino Acids

36.22

Weight (kDa)

9.63

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 292 6e-73 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33020
malus_domestica MD07G1301400.v1.1
prunus_persica Prupe.2G320000_v2.0.a1 Prupe.2G320000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0383031
rosa_laevigata RLG00000026137
rosa_multiflora Rmu_co8459779.1_g000001
rosa_rugosa Rorug01G0437800
rosa_samantha Rh1AG463500 Rh1BG420600 Rh1CG434100 Rh1DG453200
rosa_wichuraiana Rw1G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccBSI CCGCTC 1 cut(s) 603
AccI GTMKAC 1 cut(s) 515
AciI CCGC 4 cut(s) 17, 601, 710, 852
AclWI GGATC 3 cut(s) 161, 174, 668
AcoI YGGCCR 2 cut(s) 180, 598
AcsI RAATTY 1 cut(s) 902
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 4 cut(s) 13, 240, 582, 635
AgsI TTSAA 5 cut(s) 40, 149, 344, 510, 697
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 5 cut(s) 85, 347, 473, 934, 993
AluI AGCT 5 cut(s) 85, 347, 473, 934, 993
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 2 cut(s) 119, 447
Alw44I GTGCAC 1 cut(s) 112
AlwI GGATC 3 cut(s) 161, 174, 668
Ama87I CYCGRG 2 cut(s) 295, 664
AoxI GGCC 3 cut(s) 180, 333, 598
ApaLI GTGCAC 1 cut(s) 112
ApeKI GCWGC 6 cut(s) 82, 347, 392, 686, 700, 911
ApoI RAATTY 1 cut(s) 902
AspLEI GCGC 2 cut(s) 374, 589
AspS9I GGNCC 2 cut(s) 661, 748
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 2 cut(s) 931, 971
AsuII TTCGAA 1 cut(s) 312
AvaI CYCGRG 2 cut(s) 295, 664
AvaII GGWCC 2 cut(s) 661, 748
BaeGI GKGCMC 2 cut(s) 116, 710
BamHI GGATCC 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 6 cut(s) 94, 334, 404, 673, 712, 898
BccI CCATC 2 cut(s) 739, 919
BceAI ACGGC 2 cut(s) 195, 282
BcgI CGANNNNNNTGC 2 cut(s) 957, 991
BciT130I CCWGG 1 cut(s) 171
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 2 cut(s) 119, 447
BfaI CTAG 2 cut(s) 417, 994
BglI GCCNNNNNGGC 1 cut(s) 714
BisI GCNGC 7 cut(s) 83, 348, 393, 601, 687, 701, 912
BlsI GCNGC 7 cut(s) 84, 349, 394, 602, 688, 702, 913
BmcAI AGTACT 2 cut(s) 13, 240
Bme1390I CCNGG 2 cut(s) 171, 486
Bme18I GGWCC 2 cut(s) 661, 748
BmeT110I CYCGRG 2 cut(s) 295, 664
BmgT120I GGNCC 2 cut(s) 661, 748
BmiI GGNNCC 4 cut(s) 168, 663, 741, 750
BmrFI CCNGG 2 cut(s) 171, 486
BmsI GCATC 4 cut(s) 220, 242, 763, 801
BpiI GAAGAC 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 118
Bpu14I TTCGAA 1 cut(s) 312
BpuMI CCSGG 1 cut(s) 486
Bsa29I ATCGAT 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 355, 805
Bse118I RCCGGY 3 cut(s) 182, 283, 956
Bse3DI GCAATG 3 cut(s) 607, 921, 958
BseBI CCWGG 1 cut(s) 171
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 355, 805
BseGI GGATG 2 cut(s) 778, 792
BseMI GCAATG 3 cut(s) 607, 921, 958
BseMII CTCAG 1 cut(s) 704
BseRI GAGGAG 1 cut(s) 824
BseSI GKGCMC 2 cut(s) 116, 710
BseX3I CGGCCG 1 cut(s) 180
BseXI GCAGC 6 cut(s) 94, 334, 404, 673, 712, 898
BseYI CCCAGC 2 cut(s) 751, 844
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 3 cut(s) 182, 335, 600
BshVI ATCGAT 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 116
BsiHKCI CYCGRG 2 cut(s) 295, 664
BsiSI CCGG 6 cut(s) 183, 284, 444, 486, 677, 957
BslFI GGGAC 2 cut(s) 413, 942
BsmAI GTCTC 2 cut(s) 119, 447
BsmFI GGGAC 2 cut(s) 413, 942
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 3 cut(s) 182, 335, 600
BsoBI CYCGRG 2 cut(s) 295, 664
Bsp119I TTCGAA 1 cut(s) 312
Bsp1286I GDGCHC 2 cut(s) 116, 710
Bsp1407I TGTACA 1 cut(s) 633
Bsp143I GATC 2 cut(s) 166, 673
BspACI CCGC 4 cut(s) 17, 601, 710, 852
BspANI GGCC 3 cut(s) 182, 335, 600
BspCNI CTCAG 1 cut(s) 703
BspDI ATCGAT 1 cut(s) 246
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 4 cut(s) 168, 663, 741, 750
BspPI GGATC 3 cut(s) 161, 174, 668
BspT104I TTCGAA 1 cut(s) 312
BsrBI CCGCTC 1 cut(s) 603
BsrDI GCAATG 3 cut(s) 607, 921, 958
BsrFI RCCGGY 3 cut(s) 182, 283, 956
BsrGI TGTACA 1 cut(s) 633
BssAI RCCGGY 3 cut(s) 182, 283, 956
BssECI CCNNGG 2 cut(s) 355, 805
BssMI GATC 2 cut(s) 166, 673
BssNI GRCGYC 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 445
BstACI GRCGYC 1 cut(s) 174
BstAPI GCANNNNNTGC 1 cut(s) 686
BstAUI TGTACA 1 cut(s) 633
BstBI TTCGAA 1 cut(s) 312
BstC8I GCNNGC 5 cut(s) 285, 352, 710, 757, 790
BstDEI CTNAG 3 cut(s) 26, 118, 690
BstF5I GGATG 2 cut(s) 778, 792
BstHHI GCGC 2 cut(s) 374, 589
BstKTI GATC 2 cut(s) 169, 676
BstMAI GTCTC 2 cut(s) 119, 447
BstMBI GATC 2 cut(s) 166, 673
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 5 cut(s) 392, 609, 686, 709, 714
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 2 cut(s) 169, 484
BstSLI GKGCMC 2 cut(s) 116, 710
BstV1I GCAGC 6 cut(s) 94, 334, 404, 673, 712, 898
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 2 cut(s) 166, 673
BstYI RGATCY 2 cut(s) 166, 673
BstZI CGGCCG 1 cut(s) 180
Bsu15I ATCGAT 1 cut(s) 246
BsuRI GGCC 3 cut(s) 182, 335, 600
BsuTUI ATCGAT 1 cut(s) 246
BtsCI GGATG 2 cut(s) 778, 792
BtsI GCAGTG 1 cut(s) 710
BtsIMutI CAGTG 1 cut(s) 710
Cac8I GCNNGC 5 cut(s) 285, 352, 710, 757, 790
CciI TCATGA 1 cut(s) 205
CfoI GCGC 2 cut(s) 374, 589
Cfr10I RCCGGY 3 cut(s) 182, 283, 956
Cfr13I GGNCC 2 cut(s) 661, 748
ClaI ATCGAT 1 cut(s) 246
CseI GACGC 1 cut(s) 163
Csp6I GTAC 4 cut(s) 12, 239, 581, 634
CspCI CAANNNNNGTGG 2 cut(s) 717, 752
CviAII CATG 2 cut(s) 206, 351
CviQI GTAC 4 cut(s) 12, 239, 581, 634
DdeI CTNAG 3 cut(s) 26, 118, 690
DpnI GATC 2 cut(s) 168, 675
DpnII GATC 2 cut(s) 166, 673
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 2 cut(s) 180, 598
EagI CGGCCG 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 445
EclXI CGGCCG 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 661, 748
Eco52I CGGCCG 1 cut(s) 180
Eco88I CYCGRG 2 cut(s) 295, 664
EcoO109I RGGNCCY 1 cut(s) 661
EcoRII CCWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 235
FaeI CATG 2 cut(s) 209, 354
FaqI GGGAC 2 cut(s) 413, 942
FatI CATG 2 cut(s) 205, 350
FauI CCCGC 1 cut(s) 717
FblI GTMKAC 1 cut(s) 515
Fnu4HI GCNGC 7 cut(s) 83, 348, 393, 601, 687, 701, 912
FokI GGATG 2 cut(s) 779, 785
Fsp4HI GCNGC 7 cut(s) 83, 348, 393, 601, 687, 701, 912
FspBI CTAG 2 cut(s) 417, 994
GlaI GCGC 2 cut(s) 373, 588
GluI GCNGC 7 cut(s) 83, 348, 393, 601, 687, 701, 912
GsaI CCCAGC 2 cut(s) 755, 848
HaeIII GGCC 3 cut(s) 182, 335, 600
HapII CCGG 6 cut(s) 183, 284, 444, 486, 677, 957
HgaI GACGC 1 cut(s) 163
HhaI GCGC 2 cut(s) 374, 589
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 2 cut(s) 209, 354
Hin6I GCGC 2 cut(s) 372, 587
HinP1I GCGC 2 cut(s) 372, 587
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HindIII AAGCTT 1 cut(s) 471
HinfI GANTC 5 cut(s) 248, 278, 298, 880, 964
HpaII CCGG 6 cut(s) 183, 284, 444, 486, 677, 957
HphI GGTGA 2 cut(s) 931, 971
Hpy166II GTNNAC 3 cut(s) 114, 516, 816
Hpy188I TCNGA 4 cut(s) 69, 478, 744, 823
Hpy188III TCNNGA 4 cut(s) 164, 206, 501, 659
Hpy8I GTNNAC 3 cut(s) 114, 516, 816
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 435
HpyF10VI GCNNNNNNNGC 5 cut(s) 392, 609, 686, 709, 714
HpyF3I CTNAG 3 cut(s) 26, 118, 690
HpySE526I ACGT 1 cut(s) 435
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 209, 354
HspAI GCGC 2 cut(s) 372, 587
KroI GCCGGC 1 cut(s) 283
KroNI GCCGGC 1 cut(s) 285
Kzo9I GATC 2 cut(s) 166, 673
LmnI GCTCC 1 cut(s) 90
Lsp1109I GCAGC 6 cut(s) 94, 334, 404, 673, 712, 898
LweI GCATC 4 cut(s) 220, 242, 763, 801
MaeI CTAG 2 cut(s) 417, 994
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 4 cut(s) 175, 567, 766, 779
MalI GATC 2 cut(s) 168, 675
MbiI CCGCTC 1 cut(s) 603
MboI GATC 2 cut(s) 166, 673
MboII GAAGA 6 cut(s) 293, 459, 462, 571, 907, 934
MflI RGATCY 2 cut(s) 166, 673
MhlI GDGCHC 2 cut(s) 116, 710
MluCI AATT 4 cut(s) 637, 902, 973, 984
MlyI GAGTC 2 cut(s) 272, 307
MnlI CCTC 9 cut(s) 136, 268, 299, 350, 413, 532, 800, 845, 894
Mph1103I ATGCAT 1 cut(s) 235
MroNI GCCGGC 1 cut(s) 283
MseI TTAA 5 cut(s) 135, 642, 798, 944, 987
MslI CAYNNNNRTG 1 cut(s) 204
MspI CCGG 6 cut(s) 183, 284, 444, 486, 677, 957
MspR9I CCNGG 2 cut(s) 171, 486
Mva1269I GAATGC 1 cut(s) 201
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 5 cut(s) 392, 609, 686, 709, 714
NaeI GCCGGC 1 cut(s) 285
NciI CCSGG 1 cut(s) 486
NdeII GATC 2 cut(s) 166, 673
NgoMIV GCCGGC 1 cut(s) 283
NlaIII CATG 2 cut(s) 209, 354
NlaIV GGNNCC 4 cut(s) 168, 663, 741, 750
NmeAIII GCCGAG 1 cut(s) 380
NmuCI GTSAC 2 cut(s) 175, 766
NsiI ATGCAT 1 cut(s) 235
NspI RCATGY 1 cut(s) 354
NspV TTCGAA 1 cut(s) 312
PaeI GCATGC 1 cut(s) 354
PagI TCATGA 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 1 cut(s) 201
PdiI GCCGGC 1 cut(s) 285
PfeI GAWTC 3 cut(s) 248, 880, 964
PkrI GCNGC 7 cut(s) 84, 349, 394, 602, 688, 702, 913
PleI GAGTC 2 cut(s) 272, 306
PpsI GAGTC 2 cut(s) 272, 306
PpuMI RGGWCCY 1 cut(s) 661
Psp5II RGGWCCY 1 cut(s) 661
Psp6I CCWGG 1 cut(s) 169
PspFI CCCAGC 2 cut(s) 751, 844
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 4 cut(s) 168, 663, 741, 750
PspPI GGNCC 2 cut(s) 661, 748
PspPPI RGGWCCY 1 cut(s) 661
PsuI RGATCY 2 cut(s) 166, 673
RsaI GTAC 4 cut(s) 13, 240, 582, 635
RsaNI GTAC 4 cut(s) 12, 239, 581, 634
RseI CAYNNNNRTG 1 cut(s) 204
SalI GTCGAC 1 cut(s) 514
SaqAI TTAA 5 cut(s) 135, 642, 798, 944, 987
SatI GCNGC 7 cut(s) 83, 348, 393, 601, 687, 701, 912
Sau3AI GATC 2 cut(s) 166, 673
Sau96I GGNCC 2 cut(s) 661, 748
ScaI AGTACT 2 cut(s) 13, 240
SchI GAGTC 2 cut(s) 272, 307
ScrFI CCNGG 2 cut(s) 171, 486
SduI GDGCHC 2 cut(s) 116, 710
SfaNI GCATC 4 cut(s) 220, 242, 763, 801
SfuI TTCGAA 1 cut(s) 312
SinI GGWCC 2 cut(s) 661, 748
SmiMI CAYNNNNRTG 1 cut(s) 204
SphI GCATGC 1 cut(s) 354
Sse9I AATT 4 cut(s) 637, 902, 973, 984
SsiI CCGC 4 cut(s) 17, 601, 710, 852
SspMI CTAG 2 cut(s) 417, 994
StyD4I CCNGG 2 cut(s) 169, 484
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 438
TaqI TCGA 7 cut(s) 246, 260, 304, 312, 515, 936, 967
TasI AATT 4 cut(s) 637, 902, 973, 984
TatI WGTACW 3 cut(s) 11, 238, 633
TauI GCSGC 1 cut(s) 603
TfiI GAWTC 3 cut(s) 248, 880, 964
Tru1I TTAA 5 cut(s) 135, 642, 798, 944, 987
Tru9I TTAA 5 cut(s) 135, 642, 798, 944, 987
TscAI CASTG 1 cut(s) 710
TseFI GTSAC 2 cut(s) 175, 766
TseI GCWGC 6 cut(s) 82, 347, 392, 686, 700, 911
Tsp45I GTSAC 2 cut(s) 175, 766
TspDTI ATGAA 3 cut(s) 17, 65, 194
TspGWI ACGGA 1 cut(s) 785
TspRI CASTG 1 cut(s) 710
VneI GTGCAC 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 661, 748
XapI RAATTY 1 cut(s) 902
XceI RCATGY 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 515
XspI CTAG 2 cut(s) 417, 994
ZrmI AGTACT 2 cut(s) 13, 240
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.