Rh1AG463500

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017370
Physical Location & Seq
Reverse (-)
67946733 .. 67948188
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG463500.1

Sequence Viewer

Length: 978 bp
ATGACATTGCAGCTTAGCTGGCTGGTGGTTGCCTTCTCACTTGCCACTGCAGCTGGGTTGCTTAATTTCCTGCTCCAAGTTGGGTTTTATATAAGTTCATGTAACGTAGCGGAGTTCATTGTGAAGGAGGAAGTTCGAAAAGGGGTGATTGGAAATCGAGGAGTGGCAGCTGGTCTTGTGAGACTGCACTTTCATGACTGCTTTGTTAGGGGTTGTGATGCATCAGTGCTGATTGATTCAACTTCCTCAAACACAGCAGAAAAAGATGCACCAGCAAACAACCCGAGTCTACGAGGGTTTGAAGTCATCGACAATGCCAAGGCCAGACTTGAATCTATATGCAAAGGTGTCGTATCATGTGCTGATATAGTTGCTTTTGCAGCAAGGGATAGCGTTGAACTTACTGGAGGGCTTGGCTATGACGTTCCTGCTGGAAGAAGAGATGGCAGAGTTTCAGTAGCTTCAGACACATTCACAAACTTGCCTCCTCCAACTGCCAATGTCAACCAACTCACTCAACTTTTTTCAAACAAGGGTTTCACGCAAGATGAAATGGTCACTCTCTCTGGAGCACACACAATTGGGCGCTCTCACTGCAGTTCTTTCAGTAATAGATTGTACAACTTCAATGCAACAACAAAGCAGGACCCTAGTTTAGATCCCCGGTACGCTGCGCAGTTGAAGCAGCAATGTCCACAAGGCAACACAAATCCAAACTTGGTGGTTGCCATGAACCCTTTCAGCCCTTTCACAACCGATGTATCCTACTACGCTGACATTTTGGCAAACCGAGGCTTGTTCACATCAGACCAAACTCTCATCACAAACTCTGCAACCGCAAACCAGGTTAATCAAAATGCCAGGAATCCCTTCCTGTGGAATAACAAATTTGCTGCTGCAATGGTGAAGATGGGACGACTCGGTGTCCTGACTGGCAATGCTGGTGAGATTCGGGCAAAGTGCAGGGTCTTTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

325

Amino Acids

35.05

Weight (kDa)

8.62

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 289 9.2e-88 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33020
malus_domestica MD07G1301400.v1.1
prunus_persica Prupe.2G320000_v2.0.a1 Prupe.2G320000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0383031
rosa_laevigata RLG00000026137
rosa_multiflora Rmu_co8459779.1_g000001
rosa_rugosa Rorug01G0437800
rosa_samantha Rh1AG463500 Rh1BG420600 Rh1CG434100 Rh1DG453200
rosa_wichuraiana Rw1G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 675
AccI GTMKAC 1 cut(s) 289
AciI CCGC 2 cut(s) 110, 837
AclWI GGATC 1 cut(s) 653
AcsI RAATTY 1 cut(s) 887
AcuI CTGAAG 1 cut(s) 447
AfaI GTAC 2 cut(s) 620, 668
AfiI CCNNNNNNNGG 1 cut(s) 876
AgsI TTSAA 7 cut(s) 240, 302, 332, 398, 528, 628, 682
AhdI GACNNNNNGTC 1 cut(s) 923
AjnI CCWGG 2 cut(s) 843, 860
AluBI AGCT 5 cut(s) 13, 18, 53, 170, 461
AluI AGCT 5 cut(s) 13, 18, 53, 170, 461
Alw21I GWGCWC 1 cut(s) 574
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 1 cut(s) 653
Ama87I CYCGRG 1 cut(s) 283
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 8 cut(s) 10, 50, 167, 380, 671, 685, 893, 896
ApoI RAATTY 1 cut(s) 887
Asp700I GAANNNNTTC 2 cut(s) 737, 869
AspLEI GCGC 2 cut(s) 588, 676
AspS9I GGNCC 1 cut(s) 646
AsuC2I CCSGG 1 cut(s) 664
AsuHPI GGTGA 3 cut(s) 157, 916, 956
AsuII TTCGAA 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 283
AvaII GGWCC 1 cut(s) 646
BaeI ACNNNNGTAYC 2 cut(s) 744, 777
Bbv12I GWGCWC 1 cut(s) 574
BbvI GCAGC 8 cut(s) 22, 62, 179, 392, 658, 697, 880, 883
BccI CCATC 2 cut(s) 437, 904
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BciT130I CCWGG 2 cut(s) 845, 862
BciVI GTATCC 1 cut(s) 772
BcnI CCSGG 1 cut(s) 664
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 2 cut(s) 651, 976
BfmI CTRYAG 2 cut(s) 48, 595
BfoI RGCGCY 1 cut(s) 589
BfuI GTATCC 1 cut(s) 772
BisI GCNGC 8 cut(s) 11, 51, 168, 381, 672, 686, 894, 897
BlpI GCTNAGC 1 cut(s) 14
BlsI GCNGC 8 cut(s) 12, 52, 169, 382, 673, 687, 895, 898
Bme1390I CCNGG 3 cut(s) 664, 845, 862
Bme18I GGWCC 1 cut(s) 646
BmeRI GACNNNNNGTC 1 cut(s) 923
BmeT110I CYCGRG 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 646
BmiI GGNNCC 1 cut(s) 648
BmrFI CCNGG 3 cut(s) 664, 845, 862
BmsI GCATC 3 cut(s) 208, 230, 256
BpmI CTGGAG 2 cut(s) 426, 588
Bpu1102I GCTNAGC 1 cut(s) 14
Bpu14I TTCGAA 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 664
BsaJI CCNNGG 3 cut(s) 318, 662, 790
Bsc4I CCNNNNNNNGG 1 cut(s) 876
Bse1I ACTGG 2 cut(s) 409, 937
Bse3DI GCAATG 4 cut(s) 5, 695, 906, 943
BseBI CCWGG 2 cut(s) 845, 862
BseDI CCNNGG 3 cut(s) 318, 662, 790
BseLI CCNNNNNNNGG 1 cut(s) 876
BseMI GCAATG 4 cut(s) 5, 695, 906, 943
BseNI ACTGG 2 cut(s) 409, 937
BseRI GAGGAG 2 cut(s) 174, 477
BseXI GCAGC 8 cut(s) 22, 62, 179, 392, 658, 697, 880, 883
BseYI CCCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 170
BshFI GGCC 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 574
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 1 cut(s) 664
BslFI GGGAC 1 cut(s) 927
BslI CCNNNNNNNGG 1 cut(s) 876
BsmAI GTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 927
BsnI GGCC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 283
Bsp119I TTCGAA 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 574
Bsp1407I TGTACA 1 cut(s) 618
Bsp143I GATC 1 cut(s) 658
Bsp1720I GCTNAGC 1 cut(s) 14
BspACI CCGC 2 cut(s) 110, 837
BspANI GGCC 1 cut(s) 323
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 648
BspMAI CTGCAG 2 cut(s) 52, 599
BspPI GGATC 1 cut(s) 653
BspT104I TTCGAA 1 cut(s) 136
BsrDI GCAATG 4 cut(s) 5, 695, 906, 943
BsrGI TGTACA 1 cut(s) 618
BsrI ACTGG 2 cut(s) 409, 937
BssECI CCNNGG 3 cut(s) 318, 662, 790
BssMI GATC 1 cut(s) 658
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 845, 862
Bst6I CTCTTC 1 cut(s) 433
BstAUI TGTACA 1 cut(s) 618
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 589
BstHHI GCGC 2 cut(s) 588, 676
BstKTI GATC 1 cut(s) 661
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 1 cut(s) 658
BstMWI GCNNNNNNNGC 5 cut(s) 19, 50, 380, 594, 682
BstNI CCWGG 2 cut(s) 845, 862
BstSCI CCNGG 3 cut(s) 662, 843, 860
BstSFI CTRYAG 2 cut(s) 48, 595
BstV1I GCAGC 8 cut(s) 22, 62, 179, 392, 658, 697, 880, 883
BstX2I RGATCY 1 cut(s) 658
BstYI RGATCY 1 cut(s) 658
BsuI GTATCC 1 cut(s) 772
BsuRI GGCC 1 cut(s) 323
BtsI GCAGTG 2 cut(s) 45, 592
BtsIMutI CAGTG 3 cut(s) 45, 231, 592
Cac8I GCNNGC 1 cut(s) 20
CciI TCATGA 1 cut(s) 193
CfoI GCGC 2 cut(s) 588, 676
Cfr13I GGNCC 1 cut(s) 646
CsiI ACCWGGT 1 cut(s) 843
Csp6I GTAC 2 cut(s) 619, 667
CspCI CAANNNNNGTGG 2 cut(s) 702, 737
CviAII CATG 4 cut(s) 99, 194, 357, 730
CviQI GTAC 2 cut(s) 619, 667
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 660
DpnII GATC 1 cut(s) 658
DriI GACNNNNNGTC 1 cut(s) 923
Eam1104I CTCTTC 1 cut(s) 433
Eam1105I GACNNNNNGTC 1 cut(s) 923
EarI CTCTTC 1 cut(s) 433
Eco130I CCWWGG 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 646
Eco57I CTGAAG 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 646
EcoRII CCWGG 2 cut(s) 843, 860
EcoT14I CCWWGG 1 cut(s) 318
EcoT22I ATGCAT 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 4 cut(s) 102, 197, 360, 733
FaqI GGGAC 1 cut(s) 927
FatI CATG 4 cut(s) 98, 193, 356, 729
FblI GTMKAC 1 cut(s) 289
Fnu4HI GCNGC 8 cut(s) 11, 51, 168, 381, 672, 686, 894, 897
Fsp4HI GCNGC 8 cut(s) 11, 51, 168, 381, 672, 686, 894, 897
FspBI CTAG 2 cut(s) 651, 976
FspI TGCGCA 1 cut(s) 675
GlaI GCGC 2 cut(s) 587, 675
GluI GCNGC 8 cut(s) 11, 51, 168, 381, 672, 686, 894, 897
GsaI CCCAGC 1 cut(s) 57
GsuI CTGGAG 2 cut(s) 426, 588
HaeII RGCGCY 1 cut(s) 589
HaeIII GGCC 1 cut(s) 323
HapII CCGG 1 cut(s) 664
HhaI GCGC 2 cut(s) 588, 676
Hin1II CATG 4 cut(s) 102, 197, 360, 733
Hin6I GCGC 2 cut(s) 586, 674
HinP1I GCGC 2 cut(s) 586, 674
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HinfI GANTC 6 cut(s) 236, 286, 332, 865, 918, 949
HpaII CCGG 1 cut(s) 664
HphI GGTGA 3 cut(s) 157, 916, 956
Hpy166II GTNNAC 4 cut(s) 290, 505, 695, 801
Hpy188I TCNGA 2 cut(s) 466, 808
Hpy188III TCNNGA 3 cut(s) 194, 567, 928
Hpy8I GTNNAC 4 cut(s) 290, 505, 695, 801
HpyAV CCTTC 3 cut(s) 43, 118, 880
HpyCH4IV ACGT 2 cut(s) 105, 423
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 50, 380, 594, 682
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 2 cut(s) 105, 423
Hsp92II CATG 4 cut(s) 102, 197, 360, 733
HspAI GCGC 2 cut(s) 586, 674
Kzo9I GATC 1 cut(s) 658
LmnI GCTCC 2 cut(s) 78, 569
Lsp1109I GCAGC 8 cut(s) 22, 62, 179, 392, 658, 697, 880, 883
LweI GCATC 3 cut(s) 208, 230, 256
MabI ACCWGGT 1 cut(s) 843
MaeI CTAG 2 cut(s) 651, 976
MaeII ACGT 2 cut(s) 105, 423
MaeIII GTNAC 2 cut(s) 101, 556
MalI GATC 1 cut(s) 660
MboI GATC 1 cut(s) 658
MboII GAAGA 3 cut(s) 447, 450, 919
MfeI CAATTG 1 cut(s) 579
MflI RGATCY 1 cut(s) 658
MhlI GDGCHC 1 cut(s) 574
MluCI AATT 3 cut(s) 64, 579, 887
MlyI GAGTC 2 cut(s) 295, 912
MmeI TCCRAC 1 cut(s) 515
MnlI CCTC 8 cut(s) 121, 152, 256, 287, 401, 495, 498, 785
Mph1103I ATGCAT 1 cut(s) 223
MroXI GAANNNNTTC 2 cut(s) 737, 869
MseI TTAA 3 cut(s) 63, 849, 972
MslI CAYNNNNRTG 1 cut(s) 192
MspA1I CMGCKG 2 cut(s) 53, 170
MspI CCGG 1 cut(s) 664
MspR9I CCNGG 3 cut(s) 664, 845, 862
MunI CAATTG 1 cut(s) 579
MvaI CCWGG 2 cut(s) 845, 862
MwoI GCNNNNNNNGC 5 cut(s) 19, 50, 380, 594, 682
NciI CCSGG 1 cut(s) 664
NdeII GATC 1 cut(s) 658
NlaIII CATG 4 cut(s) 102, 197, 360, 733
NlaIV GGNNCC 1 cut(s) 648
NmuCI GTSAC 1 cut(s) 556
NsbI TGCGCA 1 cut(s) 675
NsiI ATGCAT 1 cut(s) 223
NspV TTCGAA 1 cut(s) 136
PagI TCATGA 1 cut(s) 193
PdmI GAANNNNTTC 2 cut(s) 737, 869
PfeI GAWTC 4 cut(s) 236, 332, 865, 949
PkrI GCNGC 8 cut(s) 12, 52, 169, 382, 673, 687, 895, 898
PleI GAGTC 2 cut(s) 294, 912
PpsI GAGTC 2 cut(s) 294, 912
PpuMI RGGWCCY 1 cut(s) 646
Psp5II RGGWCCY 1 cut(s) 646
Psp6I CCWGG 2 cut(s) 843, 860
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 2 cut(s) 843, 860
PspN4I GGNNCC 1 cut(s) 648
PspPI GGNCC 1 cut(s) 646
PspPPI RGGWCCY 1 cut(s) 646
PstI CTGCAG 2 cut(s) 52, 599
PsuI RGATCY 1 cut(s) 658
PvuII CAGCTG 2 cut(s) 53, 170
RsaI GTAC 2 cut(s) 620, 668
RsaNI GTAC 2 cut(s) 619, 667
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 3 cut(s) 63, 849, 972
SatI GCNGC 8 cut(s) 11, 51, 168, 381, 672, 686, 894, 897
Sau3AI GATC 1 cut(s) 658
Sau96I GGNCC 1 cut(s) 646
SchI GAGTC 2 cut(s) 295, 912
ScrFI CCNGG 3 cut(s) 664, 845, 862
SduI GDGCHC 1 cut(s) 574
SetI ASST 9 cut(s) 15, 20, 55, 108, 172, 349, 426, 463, 849
SexAI ACCWGGT 1 cut(s) 843
SfaNI GCATC 3 cut(s) 208, 230, 256
SfcI CTRYAG 2 cut(s) 48, 595
SfuI TTCGAA 1 cut(s) 136
SinI GGWCC 1 cut(s) 646
SmiMI CAYNNNNRTG 1 cut(s) 192
Sse9I AATT 3 cut(s) 64, 579, 887
SsiI CCGC 2 cut(s) 110, 837
SspMI CTAG 2 cut(s) 651, 976
StyD4I CCNGG 3 cut(s) 662, 843, 860
StyI CCWWGG 1 cut(s) 318
TaiI ACGT 2 cut(s) 108, 426
TaqI TCGA 3 cut(s) 136, 157, 309
TasI AATT 3 cut(s) 64, 579, 887
TatI WGTACW 1 cut(s) 618
TfiI GAWTC 4 cut(s) 236, 332, 865, 949
Tru1I TTAA 3 cut(s) 63, 849, 972
Tru9I TTAA 3 cut(s) 63, 849, 972
TscAI CASTG 3 cut(s) 52, 231, 599
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 8 cut(s) 10, 50, 167, 380, 671, 685, 893, 896
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 5 cut(s) 87, 106, 182, 564, 746
TspRI CASTG 3 cut(s) 52, 231, 599
VpaK11BI GGWCC 1 cut(s) 646
XapI RAATTY 1 cut(s) 887
XmiI GTMKAC 1 cut(s) 289
XmnI GAANNNNTTC 2 cut(s) 737, 869
XspI CTAG 2 cut(s) 651, 976
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.