Rmu_co8459779.1_g000001

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8459779.1
OG0017370
Physical Location & Seq
Forward (+)
1 .. 1732
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8459779.1_g000001.1.cds

Sequence Viewer

Length: 920 bp
gtgttgattcacagctccaagttgggttttatacaagttcatgtaacatagcggagttcattgtgaaggaggaagttcgaaaaggggtgattggaaatcgaggagtggcagctggtcttgtgagactgcactttcatgactgctttgttaggggttgtgatgcatcagtgctgattgattcaacttcctcaaacacagcagaaaaagatgcaccagcaaacaacccgagtctacgagggtttgaagtcattgacaatgccaaggccagacttgaatctatatgcaaaggtgtcgtatcatgtgctgatatagttgcttttgcagcaagggatagcgttgaacttactggagggcttggctatgacgttcctgctggaagaagagatggcagagtttcagtagcttcagacacattcacaaacttgcctcctccaactgccaatgtcaaccaactcactcaacttttttcaaacaagggtttcacgcaagatgaaatggtcactctctctggagcacacacaattgggcgctctcactgcagttctttcagtaatagattgtacaacttcaatgcaacaacaaagcaggaccctagtttagatccccggtacgctgagcagttgaagcagcaatgtcaacaaggcaacacaaatccaaacttagtggttgccatgaaccctttcagccctttcacaaccgatgtatcctactacgctgacattttggcaaaccgaggcttgttcacatcagaccaaactctcatcacaaactctgcaaccgcaaaccaagttaatcaaaatgccaggaatcccttcctgtggaataacaaatttgctgctgcaatggtgaagatgggacgactcggtgtcctgactggcaatgatggtgagattcgggcaaagtgcagggtctttaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

305

Amino Acids

33.05

Weight (kDa)

7.68

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33020
malus_domestica MD07G1301400.v1.1
prunus_persica Prupe.2G320000_v2.0.a1 Prupe.2G320000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0383031
rosa_laevigata RLG00000026137
rosa_multiflora Rmu_co8459779.1_g000001
rosa_rugosa Rorug01G0437800
rosa_samantha Rh1AG463500 Rh1BG420600 Rh1CG434100 Rh1DG453200
rosa_wichuraiana Rw1G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 231
AciI CCGC 2 cut(s) 52, 779
AclWI GGATC 1 cut(s) 595
AcsI RAATTY 1 cut(s) 829
AcuI CTGAAG 1 cut(s) 389
AfaI GTAC 2 cut(s) 562, 610
AfiI CCNNNNNNNGG 1 cut(s) 818
AgsI TTSAA 7 cut(s) 182, 244, 274, 340, 470, 570, 624
AhdI GACNNNNNGTC 1 cut(s) 865
AjnI CCWGG 1 cut(s) 802
AluBI AGCT 3 cut(s) 15, 112, 403
AluI AGCT 3 cut(s) 15, 112, 403
Alw21I GWGCWC 1 cut(s) 516
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 1 cut(s) 595
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 5 cut(s) 109, 322, 627, 835, 838
ApoI RAATTY 1 cut(s) 829
Asp700I GAANNNNTTC 2 cut(s) 679, 811
AspLEI GCGC 1 cut(s) 530
AspS9I GGNCC 1 cut(s) 588
AsuC2I CCSGG 1 cut(s) 606
AsuHPI GGTGA 3 cut(s) 99, 858, 898
AsuII TTCGAA 1 cut(s) 78
AvaI CYCGRG 1 cut(s) 225
AvaII GGWCC 1 cut(s) 588
BaeI ACNNNNGTAYC 2 cut(s) 686, 719
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 5 cut(s) 121, 334, 639, 822, 825
BccI CCATC 3 cut(s) 379, 846, 877
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BciT130I CCWGG 1 cut(s) 804
BciVI GTATCC 1 cut(s) 714
BcnI CCSGG 1 cut(s) 606
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 2 cut(s) 593, 918
BfmI CTRYAG 1 cut(s) 537
BfoI RGCGCY 1 cut(s) 531
BfuI GTATCC 1 cut(s) 714
BisI GCNGC 5 cut(s) 110, 323, 628, 836, 839
BlpI GCTNAGC 1 cut(s) 614
BlsI GCNGC 5 cut(s) 111, 324, 629, 837, 840
Bme1390I CCNGG 2 cut(s) 606, 804
Bme18I GGWCC 1 cut(s) 588
BmeRI GACNNNNNGTC 1 cut(s) 865
BmeT110I CYCGRG 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 588
BmiI GGNNCC 1 cut(s) 590
BmrFI CCNGG 2 cut(s) 606, 804
BmsI GCATC 3 cut(s) 150, 172, 198
BpmI CTGGAG 2 cut(s) 368, 530
Bpu1102I GCTNAGC 1 cut(s) 614
Bpu14I TTCGAA 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 606
BsaJI CCNNGG 3 cut(s) 260, 604, 732
Bsc4I CCNNNNNNNGG 1 cut(s) 818
Bse1I ACTGG 2 cut(s) 351, 879
Bse3DI GCAATG 3 cut(s) 637, 848, 885
BseBI CCWGG 1 cut(s) 804
BseDI CCNNGG 3 cut(s) 260, 604, 732
BseLI CCNNNNNNNGG 1 cut(s) 818
BseMI GCAATG 3 cut(s) 637, 848, 885
BseMII CTCAG 1 cut(s) 605
BseNI ACTGG 2 cut(s) 351, 879
BseRI GAGGAG 2 cut(s) 116, 419
BseXI GCAGC 5 cut(s) 121, 334, 639, 822, 825
BsgI GTGCAG 1 cut(s) 112
BshFI GGCC 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 516
BsiHKCI CYCGRG 1 cut(s) 225
BsiSI CCGG 1 cut(s) 606
BslFI GGGAC 1 cut(s) 869
BslI CCNNNNNNNGG 1 cut(s) 818
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 869
BsnI GGCC 1 cut(s) 265
BsoBI CYCGRG 1 cut(s) 225
Bsp119I TTCGAA 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 516
Bsp1407I TGTACA 1 cut(s) 560
Bsp143I GATC 1 cut(s) 600
Bsp1720I GCTNAGC 1 cut(s) 614
BspACI CCGC 2 cut(s) 52, 779
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 606
BspHI TCATGA 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 590
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 1 cut(s) 595
BspT104I TTCGAA 1 cut(s) 78
BsrDI GCAATG 3 cut(s) 637, 848, 885
BsrGI TGTACA 1 cut(s) 560
BsrI ACTGG 2 cut(s) 351, 879
BssECI CCNNGG 3 cut(s) 260, 604, 732
BssMI GATC 1 cut(s) 600
BssT1I CCWWGG 1 cut(s) 260
Bst2UI CCWGG 1 cut(s) 804
Bst6I CTCTTC 1 cut(s) 375
BstAUI TGTACA 1 cut(s) 560
BstBI TTCGAA 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 614, 660
BstH2I RGCGCY 1 cut(s) 531
BstHHI GCGC 1 cut(s) 530
BstKTI GATC 1 cut(s) 603
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 1 cut(s) 600
BstMWI GCNNNNNNNGC 3 cut(s) 322, 536, 624
BstNI CCWGG 1 cut(s) 804
BstSCI CCNGG 2 cut(s) 604, 802
BstSFI CTRYAG 1 cut(s) 537
BstV1I GCAGC 5 cut(s) 121, 334, 639, 822, 825
BstX2I RGATCY 1 cut(s) 600
BstYI RGATCY 1 cut(s) 600
BsuI GTATCC 1 cut(s) 714
BsuRI GGCC 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 534
BtsIMutI CAGTG 2 cut(s) 173, 534
CciI TCATGA 1 cut(s) 135
CfoI GCGC 1 cut(s) 530
Cfr13I GGNCC 1 cut(s) 588
Csp6I GTAC 2 cut(s) 561, 609
CspCI CAANNNNNGTGG 2 cut(s) 644, 679
CviAII CATG 4 cut(s) 41, 136, 299, 672
CviJI RGCY 8 cut(s) 15, 112, 265, 354, 359, 403, 686, 737
CviKI_1 RGCY 8 cut(s) 15, 112, 265, 354, 359, 403, 686, 737
CviQI GTAC 2 cut(s) 561, 609
DdeI CTNAG 2 cut(s) 614, 660
DpnI GATC 1 cut(s) 602
DpnII GATC 1 cut(s) 600
DriI GACNNNNNGTC 1 cut(s) 865
Eam1104I CTCTTC 1 cut(s) 375
Eam1105I GACNNNNNGTC 1 cut(s) 865
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 588
Eco57I CTGAAG 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 225
EcoO109I RGGNCCY 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 802
EcoT14I CCWWGG 1 cut(s) 260
EcoT22I ATGCAT 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 4 cut(s) 44, 139, 302, 675
FaqI GGGAC 1 cut(s) 869
FatI CATG 4 cut(s) 40, 135, 298, 671
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 5 cut(s) 110, 323, 628, 836, 839
Fsp4HI GCNGC 5 cut(s) 110, 323, 628, 836, 839
FspBI CTAG 2 cut(s) 593, 918
GlaI GCGC 1 cut(s) 529
GluI GCNGC 5 cut(s) 110, 323, 628, 836, 839
GsuI CTGGAG 2 cut(s) 368, 530
HaeII RGCGCY 1 cut(s) 531
HaeIII GGCC 1 cut(s) 265
HapII CCGG 1 cut(s) 606
HhaI GCGC 1 cut(s) 530
Hin1II CATG 4 cut(s) 44, 139, 302, 675
Hin6I GCGC 1 cut(s) 528
HinP1I GCGC 1 cut(s) 528
HincII GTYRAC 2 cut(s) 447, 637
HindII GTYRAC 2 cut(s) 447, 637
HinfI GANTC 7 cut(s) 7, 178, 228, 274, 807, 860, 891
HpaII CCGG 1 cut(s) 606
HphI GGTGA 3 cut(s) 99, 858, 898
Hpy166II GTNNAC 4 cut(s) 232, 447, 637, 743
Hpy188I TCNGA 2 cut(s) 408, 750
Hpy188III TCNNGA 3 cut(s) 136, 509, 870
Hpy8I GTNNAC 4 cut(s) 232, 447, 637, 743
HpyAV CCTTC 2 cut(s) 60, 822
HpyCH4IV ACGT 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 322, 536, 624
HpyF3I CTNAG 2 cut(s) 614, 660
HpySE526I ACGT 1 cut(s) 365
Hsp92II CATG 4 cut(s) 44, 139, 302, 675
HspAI GCGC 1 cut(s) 528
Kzo9I GATC 1 cut(s) 600
LmnI GCTCC 2 cut(s) 20, 511
Lsp1109I GCAGC 5 cut(s) 121, 334, 639, 822, 825
LweI GCATC 3 cut(s) 150, 172, 198
MaeI CTAG 2 cut(s) 593, 918
MaeII ACGT 1 cut(s) 365
MaeIII GTNAC 2 cut(s) 43, 498
MalI GATC 1 cut(s) 602
MboI GATC 1 cut(s) 600
MboII GAAGA 3 cut(s) 389, 392, 861
MfeI CAATTG 1 cut(s) 521
MflI RGATCY 1 cut(s) 600
MhlI GDGCHC 1 cut(s) 516
MluCI AATT 2 cut(s) 521, 829
MlyI GAGTC 2 cut(s) 237, 854
MmeI TCCRAC 1 cut(s) 457
MnlI CCTC 8 cut(s) 63, 94, 198, 229, 343, 437, 440, 727
Mph1103I ATGCAT 1 cut(s) 165
MroXI GAANNNNTTC 2 cut(s) 679, 811
MseI TTAA 2 cut(s) 791, 914
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 1 cut(s) 606
MspR9I CCNGG 2 cut(s) 606, 804
MunI CAATTG 1 cut(s) 521
MvaI CCWGG 1 cut(s) 804
MwoI GCNNNNNNNGC 3 cut(s) 322, 536, 624
NciI CCSGG 1 cut(s) 606
NdeII GATC 1 cut(s) 600
NlaIII CATG 4 cut(s) 44, 139, 302, 675
NlaIV GGNNCC 1 cut(s) 590
NmuCI GTSAC 1 cut(s) 498
NsiI ATGCAT 1 cut(s) 165
NspV TTCGAA 1 cut(s) 78
PagI TCATGA 1 cut(s) 135
PdmI GAANNNNTTC 2 cut(s) 679, 811
PfeI GAWTC 5 cut(s) 7, 178, 274, 807, 891
PkrI GCNGC 5 cut(s) 111, 324, 629, 837, 840
PleI GAGTC 2 cut(s) 236, 854
PpsI GAGTC 2 cut(s) 236, 854
PpuMI RGGWCCY 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 588
Psp6I CCWGG 1 cut(s) 802
PspGI CCWGG 1 cut(s) 802
PspN4I GGNNCC 1 cut(s) 590
PspPI GGNCC 1 cut(s) 588
PspPPI RGGWCCY 1 cut(s) 588
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 1 cut(s) 600
PvuII CAGCTG 1 cut(s) 112
RsaI GTAC 2 cut(s) 562, 610
RsaNI GTAC 2 cut(s) 561, 609
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 2 cut(s) 791, 914
SatI GCNGC 5 cut(s) 110, 323, 628, 836, 839
Sau3AI GATC 1 cut(s) 600
Sau96I GGNCC 1 cut(s) 588
SchI GAGTC 2 cut(s) 237, 854
ScrFI CCNGG 2 cut(s) 606, 804
SduI GDGCHC 1 cut(s) 516
SetI ASST 5 cut(s) 17, 114, 291, 368, 405
SfaNI GCATC 3 cut(s) 150, 172, 198
SfcI CTRYAG 1 cut(s) 537
SfuI TTCGAA 1 cut(s) 78
SinI GGWCC 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 2 cut(s) 521, 829
SsiI CCGC 2 cut(s) 52, 779
SspMI CTAG 2 cut(s) 593, 918
StyD4I CCNGG 2 cut(s) 604, 802
StyI CCWWGG 1 cut(s) 260
TaiI ACGT 1 cut(s) 368
TaqI TCGA 2 cut(s) 78, 99
TasI AATT 2 cut(s) 521, 829
TatI WGTACW 1 cut(s) 560
TfiI GAWTC 5 cut(s) 7, 178, 274, 807, 891
Tru1I TTAA 2 cut(s) 791, 914
Tru9I TTAA 2 cut(s) 791, 914
TscAI CASTG 2 cut(s) 173, 541
TseFI GTSAC 1 cut(s) 498
TseI GCWGC 5 cut(s) 109, 322, 627, 835, 838
Tsp45I GTSAC 1 cut(s) 498
TspDTI ATGAA 5 cut(s) 29, 48, 124, 506, 688
TspRI CASTG 2 cut(s) 173, 541
VpaK11BI GGWCC 1 cut(s) 588
XapI RAATTY 1 cut(s) 829
XmiI GTMKAC 1 cut(s) 231
XmnI GAANNNNTTC 2 cut(s) 679, 811
XspI CTAG 2 cut(s) 593, 918
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.